BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338779
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43620.1 | Symbols: | Pre-mRNA cleavage complex II | chr5:1... 1253 0.0
AT1G66500.1 | Symbols: | Pre-mRNA cleavage complex II | chr1:2... 1242 0.0
> AT5G43620.1 | Symbols: | Pre-mRNA cleavage complex II | chr5:17522520-17524001
FORWARD LENGTH=1482
Length=1482
Score = 1253 bits (678), Expect = 0.0
Identities = 1057/1226 (86%), Gaps = 82/1226 (7%)
Strand=Plus/Plus
Query 46 AACGCAAACGCTGGAACAACGTTGAAGAGACGAATCGACAACAATCGCGGTTACGGAATC 105
||||||||||||||||||||| |||||||||||| || |||||||||||||||| |
Sbjct 167 AACGCAAACGCTGGAACAACGATGAAGAGACGAA---ACGACAATCGCGGTTACGGTGGC 223
Query 106 GG-A---GAT-TTA-CAAGAGGAAAGGAACCGTTACGTGCCGCCGCAAAAACGTTTCAGA 159
|| | ||| ||| |||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 224 GGAATCGGATGTTATCAAGAGGAGAGGAACCGTTACGCGCCGCCGCAAAAACGTTTCAGA 283
Query 160 TCGCAAAC-GCAACCGCAAACGAATTTCCGATCTGGTCATATTCCTCTGTATCATCATCA 218
|||| ||| |||| | | | || |||||||||||||||| ||||||||||||| | |
Sbjct 284 TCGC-AACTGCAA---C-AGC-AA-TTCCGATCTGGTCATAATCCTCTGTATCAT--T-A 333
Query 219 TGGTAG-AA-A-TAATAATAACATGTCTAGGGTTTCTTCTCAATCATATAACAATTACGG 275
|||||| || | |||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 334 TGGTAGTAATACTAATAATAACGTGTCTAGGGTTTCTTCTCAGTCATATAACAATTACGG 393
Query 276 TGTTGATGTGATTGCTTCTAATTCAAGTTTTCCATTACGTAACAATGATTCTAACATCAA 335
||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| |||
Sbjct 394 TGTTGATGTGATTGCTTCTAATTCAAGTTTTGCTTTACCTAACAATGATTCTAACACCAA 453
Query 336 CAATTATCAGAAACCCTTTATTGTTGGTTATGGAAACCCTAATCCCCAAATTGTTCCTCT 395
|||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||
Sbjct 454 CAATTATCAGAAACCC--T-TTGTTGTTTATGGAAACCCTAATCCCCAAATTGTTCCTCT 510
Query 396 TCCATTACCTTATCGTAAGCTTGAT-GATGATGATTCGTTGCCTGAATGGGTTCCGAATT 454
||||||||||||||||||||||||| | | |||||||||||| |||||||||| ||||
Sbjct 511 TCCATTACCTTATCGTAAGCTTGATCCTTTA-GATTCGTTGCCTCAATGGGTTCCAAATT 569
Query 455 CAA----G-A--A-CC--CTAACTC--CGAATTTTGTACC-AA-ACA-C-----TT---- 490
||| | | | || || || ||||||||||||| || ||| | ||
Sbjct 570 CAACTCCGAATTATCCTGTTAGGTCATCGAATTTTGTACCAAACACACCTGATTTTACGA 629
Query 491 ATGTTCAAAATCCGATGAATCATTCGAACATGGTTTCAGTTGTGTCACAAACGATGTCTC 550
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 630 ATGTTCAAAATCCGATGAATCATTCGAACATGGTTTCAGTTGTGTCTCAATCGATG---- 685
Query 551 ATCATCAACCAATTGTTTTGAGCAAAGAATTGTCTGATTTACTTAG-CGTTCTTAGGAAT 609
||||||||||||||||| |||||||||||| ||||||| ||||| | |||||| |||
Sbjct 686 --CATCAACCAATTGTTTTAAGCAAAGAATTGACTGATTTGCTTAGTC-TTCTTAACAAT 742
Query 610 GAGAAAGAGAAGGAAACTTCAGAAGCAAGTAA-AAGTGATTCATTGCCCGTTGGATTAAG 668
|||||||||||| ||||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 743 GAGAAAGAGAAGAAAACTTCAGAAGCAAGTAATAA-TGATTCATTGCCTGTTGGATTAAG 801
Query 669 CTTTGATAATCCATCGTCG-TTGAATGTGCGACATGAATCTGTGATTAAGTCTCTGTATT 727
|||||| |||||||| ||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 802 CTTTGACAATCCATCATCGCTT-AATGTTCGACATGAATCTGTGATTAAGTCTCTGTATT 860
Query 728 CGGATATGCCGAGGCAATGTTCGTCGTGCGGGGTTAGGTTTAAATGTCAAGAGGAACATA 787
| |||||||||||||||||| | ||||| ||||| || || ||||||||||| || ||||
Sbjct 861 CTGATATGCCGAGGCAATGTACTTCGTGTGGGGTGAGATTCAAATGTCAAGAAGAGCATA 920
Query 788 GCAAGCATATGGATTGGCATGTAAGGAAGAACAGGAT-GGCT-AAAACCACTATGAGA-T 844
| || |||||||||||||| ||||||||||||||| | || | |||||||||| ||| |
Sbjct 921 GTAAACATATGGATTGGCACGTAAGGAAGAACAGG-TCGG-TGAAAACCACTACAAGACT 978
Query 845 TGGGCCAGCAACCGCAGAAATCGCGGGGATGGTTGGTAAGCGCATCTTTGTGGCTTAGTG 904
||| | |||||||| |||||||| |||||||||| | || |||||||| |||||| |||
Sbjct 979 TGGTC-AGCAACCGAAGAAATCGAGGGGATGGTTAGCGAGTGCATCTTTATGGCTTTGTG 1037
Query 905 CAGCAACTGGAGGAGGGACTGTAGAAGCGGCTAAACCATCTTTCGGAGGAG-A-AAC-GC 961
|| |||| ||||||||||| ||||||| || | |||||| ||||||| | || ||
Sbjct 1038 CACCAACGGGAGGAGGGACCGTAGAAG----TAG-C-ATCTTTTGGAGGAGGAGAAATGC 1091
Query 962 AGAAGAAGAAGGAAGAGGAGAAAGAACAA---CAACAGATAGTGCCTGCAGATGAAAATC 1018
|||||||||| ||| |||| ||| |||| ||||| || |||||||| |||||| |||
Sbjct 1092 AGAAGAAGAATGAAAAGGATCAAGTACAAAAACAACACATGGTGCCTGCGGATGAAGATC 1151
Query 1019 AGAAGAATTGCGCGTTGTGCGAAGAGCCGTTTGAAGAGTTCTTTAGCCATGAAGCTGATG 1078
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1152 AGAAGAATTGCGCGTTATGCGTAGAGCCGTTTGAAGAGTTCTTTAGCCATGAAGCTGATG 1211
Query 1079 ATTGGATGTATAAAGATGCAGTCTACTTAACCAAGAACGGTCGTATAGTTCACGCTAAGT 1138
| |||||||| |||||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct 1212 ACTGGATGTACAAAGATGCAGTCTACTTAACCAAGAATGGTCGTATAGTTCATGTTAAGT 1271
Query 1139 GTATGCCTGCACCCCGACCTGCAAAGGATACGAGAGAGCCGTCTAGGGTAATGTCTGTTA 1198
||||||||| |||||||||||| |||||| |||||||||||| ||||||||||||||||
Sbjct 1272 GTATGCCTGAACCCCGACCTGCTAAGGATTTGAGAGAGCCGTCGAGGGTAATGTCTGTTA 1331
Query 1199 CAGTTCCATCGGTTGCGAAAGCAATA 1224
|||||||||||||||||||||| |||
Sbjct 1332 CAGTTCCATCGGTTGCGAAAGCTATA 1357
> AT1G66500.1 | Symbols: | Pre-mRNA cleavage complex II | chr1:24811149-24812650
REVERSE LENGTH=1502
Length=1502
Score = 1242 bits (672), Expect = 0.0
Identities = 1065/1239 (86%), Gaps = 90/1239 (7%)
Strand=Plus/Plus
Query 46 AACGCAAACGCTGGAACAACGTTGAAGAGACGAATCGACAACAATCGCGGTTA------C 99
|||||||||||| |||||||| |||||||| ||| | | ||||||||||||| |
Sbjct 172 AACGCAAACGCTAGAACAACGATGAAGAGAAGAA--G-CGACAATCGCGGTTACGGTGGC 228
Query 100 GGAATCGGAGATTTA-CAAGAGGAAAGGAACCGTTACGTGCCGCCGCAAAAACGTTTCAG 158
|||||||||| ||| |||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 229 GGAATCGGAG-GTTATCAAGAGGAGACGAACCGTTACGCGCCGCCGCAAAAACGTTTCAG 287
Query 159 ATCGCAAACGCAACCGCAAACGAATTTCCGATCTGGTCATATTCCTCTGTATCATCATCA 218
||| ||| ||||| | | | || |||||||||||||||| ||||||||||||||||||
Sbjct 288 ATCACAAGCGCAA---C-AGC-AA-TTCCGATCTGGTCATAATCCTCTGTATCATCATCA 341
Query 219 TGGTAGAAATAATAATAACATGTCTAGGGTTTCTTCTCAATCATATAACAATTACGGTGT 278
|||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 342 TGGTAGTAATAATAATAACGTGTCTAGGGTTTCTTCTCAATCATATAACAATTGCGGTGT 401
Query 279 TGATGTGATTGCTTCTAATTCAAGTTTTCCATTACGTAACAATGATTCTAACATCAACAA 338
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 402 TGATGTGATTGCTTCTAATTCAAGTTTTGCATTACGTAACAATGATTCTAACACCAACAA 461
Query 339 TTATCAGAAACCCTTTATTGTTGGTTATGGAAACCCTAATCCCCAAATTGTTCCTCTTCC 398
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 462 TTATCAGAAACCCTTTGTTGCTGGTTATGGAAACCCTAATCCCCAAATTGTTCCTCTTCC 521
Query 399 ATTACCTTATCGTAAGCTTGATG---A----T-GAT-GATTCGTTGCCTGAATGGGTTCC 449
||||||||||||||||||||||| | | | |||||||| ||||| ||||||||
Sbjct 522 ATTACCTTATCGTAAGCTTGATGACAATCTCTCTTTAGATTCGTTACCTGATTGGGTTCC 581
Query 450 GAATTCAAGAA-CC---CT----A--A--C-------TC--CGAATTTTGTACCAAACA- 487
||||||||||| || || | | | || ||||||||||||||||||
Sbjct 582 GAATTCAAGAACCCTAACTCCGAATTATCCTGTTAGGTCATCGAATTTTGTACCAAACAC 641
Query 488 --C-----TT----ATGTTCAAAATCCGATGAATCATTCGAACATGGTTTCAGTTGTGTC 536
| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 TCCTGTTTTTACGAATGTTCAAAATCCGATGAATCATTCGAACATGGTTTCAGTTGTGTC 701
Query 537 ACAAACGATGTCTCAT-CATCAACCAATTGTTTTGAGCAAAGAATTGTCTGATTTACTTA 595
| | | ||| || |||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 702 TC--A--A--TCT-ATGCATCAACCAATTGTTTTGAGCAAAGAATTGACTGATTTGCTTA 754
Query 596 G-CGTTCTTAGGAATGAGAAAGAGAAGGAAACTTCAGAAGCAAGTAAAAGTGATTCATTG 654
| | |||||| ||||||||||||||| |||||| |||||||||||| |||||||| |||
Sbjct 755 GTC-TTCTTAACAATGAGAAAGAGAAGAAAACTTTAGAAGCAAGTAATAGTGATTCTTTG 813
Query 655 CCCGTTGGATTAAGCTTTGATAATCCATCGTC-GTTGAATGTGCGACATGAATCTGTGAT 713
|| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 814 CCTGTTGGATTAAGCTTTGATAATCCATCGTCACTT-AATGTTCGACATGAATCTGTGAT 872
Query 714 TAAGTCTCTGTATTCGGATATGCCGAGGCAATGTTCGTCGTGCGGGGTT-AGGTTTAAAT 772
||||||||||||||| ||||||||||| |||||||| ||||| ||| || || || || |
Sbjct 873 TAAGTCTCTGTATTCTGATATGCCGAGACAATGTTCATCGTGTGGG-TTGAGATTCAAGT 931
Query 773 GTCAAGAGGAACATAGCAAGCATATGGATTGGCATGTAAGGAAGAACAGGAT-GGCT-AA 830
||||||| || ||||| || || ||||||||||||||||||||||||||| | || | ||
Sbjct 932 GTCAAGAAGAGCATAGTAAACACATGGATTGGCATGTAAGGAAGAACAGG-TCGG-TGAA 989
Query 831 AACCACTATGAGATTGGGCCAGCAACCGCAGAAATCGCGGGGATGGTTGGTAAGCGCATC 890
|||||||| ||| |||| ||||||||| |||||||| |||||||||| | ||| |||||
Sbjct 990 AACCACTACAAGACTGGGTCAGCAACCGAAGAAATCGAGGGGATGGTTAGCAAGTGCATC 1049
Query 891 TTTGTGGCTTAGTGCAGCAACTGGAGGAGGGACTGTAGAAGCGGCTAAACCATCTTTCGG 950
||| |||||| ||||||| || ||||||| ||| ||||||| || | |||||| ||
Sbjct 1050 TTTATGGCTTTGTGCAGCGACGGGAGGAGAGACGGTAGAAG----TAG-C-ATCTTTTGG 1103
Query 951 AGGAGAAACGCAGAAGAAGAA-GGAAGAGGA-GAAAGAAC-AA--CAACAGATAGTGCCT 1005
|||||||| |||||||||||| |||| |||| ||| |||| || |||| || ||||||
Sbjct 1104 AGGAGAAATGCAGAAGAAGAAAGGAA-AGGACGAA-GAACCAAAACAACTCATGGTGCCT 1161
Query 1006 GCAGATGAAAATCAGAAGAATTGCGCGTTGTGCGAAGAGCCGTTTGAAGAGTTCTTTAGC 1065
|| |||||| |||||||||||||||| || |||| |||||||||||||||||||||||||
Sbjct 1162 GCGGATGAAGATCAGAAGAATTGCGCATTATGCGTAGAGCCGTTTGAAGAGTTCTTTAGC 1221
Query 1066 CATGAAGCTGATGATTGGATGTATAAAGATGCAGTCTACTTAACCAAGAACGGTCGTATA 1125
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1222 CATGAAGATGATGATTGGATGTATAAAGATGCAGTCTACTTAACCAAGAATGGTCGTATA 1281
Query 1126 GTTCACGCTAAGTGTATGCCTGCACCCCGACCTGCAAAGGATACGAGAGAGCCGTCTAGG 1185
||||| | |||||||||||||| |||||||||||| |||||| ||||||||| || |||
Sbjct 1282 GTTCATGTTAAGTGTATGCCTGAACCCCGACCTGCTAAGGATTTGAGAGAGCCTTCGAGG 1341
Query 1186 GTAATGTCTGTTACAGTTCCATCGGTTGCGAAAGCAATA 1224
||||||||||||||||||||||||||||||||||| |||
Sbjct 1342 GTAATGTCTGTTACAGTTCCATCGGTTGCGAAAGCTATA 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69025749375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5