BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg338787 Length=837 Score E Sequences producing significant alignments: (Bits) Value AT5G66990.1 | Symbols: | RWP-RK domain-containing protein | ch... 1304 0.0 > AT5G66990.1 | Symbols: | RWP-RK domain-containing protein | chr5:26744257-26745362 REVERSE LENGTH=834 Length=834 Score = 1304 bits (706), Expect = 0.0 Identities = 796/839 (95%), Gaps = 7/839 (1%) Strand=Plus/Plus Query 1 ATGGCTGATCAAAAACCTCTAATGGTCTGGTCAGAGGCCAACAACTATGAATCATTCCTT 60 ||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1 ATGGCTGATCAAAGACCTCTAATGACCTGGTTAGAGGCCAACAACTATGAATCATTCCTT 60 Query 61 CAAGAAGACATATTCTCGTTTCTTGATCAATCACTTTCCATCGATCCTCACAGCTCTTTC 120 ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| Sbjct 61 CAAGAAGACATATTCTCGTTTCTCGATCAATCACTTTTCGTCGATCCTCACAGCTCTTTC 120 Query 121 ATTAACCCTTTTAAGGATTTTCAAACCCAAACTTGGTTTTCTTTCCAAGACAGCATTGTT 180 ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 121 ATTGACCCTTTTAAGGATTTTCAAACCCAAAATTGGTTTTCTCTCCAAGACAGCATTGTT 180 Query 181 AATCCTATATCTACTACCTTTGCGGCTGATCATACGTTTCTGGCTTCACTTGATCTTGAA 240 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AATCATATATCTACTACCTTTGCGGCTGATCATACGTTTCTGGCTTCACTTGATCTTGAA 240 Query 241 GCAATCTCTAGTACTTTCTCTCTAGATATAAT-GAGCGGATGGTGGAATGATAATAATGG 299 || |||||||||||||||||||||||||| || ||| ||||||||||| || |||||||| Sbjct 241 GCTATCTCTAGTACTTTCTCTCTAGATAT-ATCGAGTGGATGGTGGAACGAGAATAATGG 299 Query 300 TAACTACAATAACCAGGTCGAACCAATTCTTGATGATATTTCAAGAACTAATACCATGGG 359 |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 300 TAACTACAATAACCAGGTCGAACCAAACCTTGATGAAATTTCAAGAACTAATACCATGGG 359 Query 360 AGATCCAAAGATGGAG-AAGATATTGCATGAAGATGTTAACACAACTATAAAAGAGAAAA 418 ||||||||| |||||| || ||||||||||||||||||||||| | || |||||||||| Sbjct 360 AGATCCAAATATGGAGCAA-ATATTGCATGAAGATGTTAACAC-A--ATGAAAGAGAAAA 415 Query 419 CAAGCCAGAAGAGGATAATTATGAAGAGGCGATATAGAGAAGATGGAGACATCAATAGTT 478 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 416 CAAGCCAGAAGAGGATAATTATGAAGAGGCGATATAGAGAAGATGGAGTCATCAATAATA 475 Query 479 TGTCAAGGGAAATGATGAAGCAGTACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGC 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 TGTCAAGGGAAATGATGAAGCAGTACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGC 535 Query 539 TTAACATTGGTGTAACCCTCTTGAAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGC 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 TTAACATTGGTGTAACCCTCTTGAAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGC 595 Query 599 CTCACCGTAAGCTCACGAGCCTTAACGCTCTAATTACCAATCTCAAGGACTTATTAGGGA 658 |||||||||||||||||||||| |||||||||||| | |||||||||||||| ||||||| Sbjct 596 CTCACCGTAAGCTCACGAGCCTAAACGCTCTAATTGCTAATCTCAAGGACTTGTTAGGGA 655 Query 659 ACACGGAGGGAAAAACGCCCAAGAGTAAGCTGAGGAATGCTTTGGAGCTTTTGGAGATGG 718 ||||| |||| | |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 656 ACACGAAGGGGAGAACGCCCAAGAGTAAGCTGAGGAACGCTTTGGAGCTTTTGGAGATGG 715 Query 719 AGAAGAAGATGATTGAGGAAGTTCCGGATTTGGAATTTGGGGACAAGACTAAGAGGTTAA 778 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 716 AGAAGAAGATGATTGAGGAAGTTCCCGATTTGGAATTTGGGGATAAGACTAAGAGGTTAA 775 Query 779 GACAGGCTTGCTTCAAGGCTAAATACAAACAGAGACGGCTCTTCTCGTCTTCTTCATGA 837 |||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| Sbjct 776 GACAGGCTTGCTTCAAGGCTAAATACAAACGGAGAAGGCTCTTCTCATCTTCTTCATGA 834 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40790127364 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5