BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338787
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66990.1 | Symbols: | RWP-RK domain-containing protein | ch... 1304 0.0
> AT5G66990.1 | Symbols: | RWP-RK domain-containing protein |
chr5:26744257-26745362 REVERSE LENGTH=834
Length=834
Score = 1304 bits (706), Expect = 0.0
Identities = 796/839 (95%), Gaps = 7/839 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGATCAAAAACCTCTAATGGTCTGGTCAGAGGCCAACAACTATGAATCATTCCTT 60
||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGATCAAAGACCTCTAATGACCTGGTTAGAGGCCAACAACTATGAATCATTCCTT 60
Query 61 CAAGAAGACATATTCTCGTTTCTTGATCAATCACTTTCCATCGATCCTCACAGCTCTTTC 120
||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct 61 CAAGAAGACATATTCTCGTTTCTCGATCAATCACTTTTCGTCGATCCTCACAGCTCTTTC 120
Query 121 ATTAACCCTTTTAAGGATTTTCAAACCCAAACTTGGTTTTCTTTCCAAGACAGCATTGTT 180
||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 121 ATTGACCCTTTTAAGGATTTTCAAACCCAAAATTGGTTTTCTCTCCAAGACAGCATTGTT 180
Query 181 AATCCTATATCTACTACCTTTGCGGCTGATCATACGTTTCTGGCTTCACTTGATCTTGAA 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATCATATATCTACTACCTTTGCGGCTGATCATACGTTTCTGGCTTCACTTGATCTTGAA 240
Query 241 GCAATCTCTAGTACTTTCTCTCTAGATATAAT-GAGCGGATGGTGGAATGATAATAATGG 299
|| |||||||||||||||||||||||||| || ||| ||||||||||| || ||||||||
Sbjct 241 GCTATCTCTAGTACTTTCTCTCTAGATAT-ATCGAGTGGATGGTGGAACGAGAATAATGG 299
Query 300 TAACTACAATAACCAGGTCGAACCAATTCTTGATGATATTTCAAGAACTAATACCATGGG 359
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 300 TAACTACAATAACCAGGTCGAACCAAACCTTGATGAAATTTCAAGAACTAATACCATGGG 359
Query 360 AGATCCAAAGATGGAG-AAGATATTGCATGAAGATGTTAACACAACTATAAAAGAGAAAA 418
||||||||| |||||| || ||||||||||||||||||||||| | || ||||||||||
Sbjct 360 AGATCCAAATATGGAGCAA-ATATTGCATGAAGATGTTAACAC-A--ATGAAAGAGAAAA 415
Query 419 CAAGCCAGAAGAGGATAATTATGAAGAGGCGATATAGAGAAGATGGAGACATCAATAGTT 478
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 416 CAAGCCAGAAGAGGATAATTATGAAGAGGCGATATAGAGAAGATGGAGTCATCAATAATA 475
Query 479 TGTCAAGGGAAATGATGAAGCAGTACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TGTCAAGGGAAATGATGAAGCAGTACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGC 535
Query 539 TTAACATTGGTGTAACCCTCTTGAAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TTAACATTGGTGTAACCCTCTTGAAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGC 595
Query 599 CTCACCGTAAGCTCACGAGCCTTAACGCTCTAATTACCAATCTCAAGGACTTATTAGGGA 658
|||||||||||||||||||||| |||||||||||| | |||||||||||||| |||||||
Sbjct 596 CTCACCGTAAGCTCACGAGCCTAAACGCTCTAATTGCTAATCTCAAGGACTTGTTAGGGA 655
Query 659 ACACGGAGGGAAAAACGCCCAAGAGTAAGCTGAGGAATGCTTTGGAGCTTTTGGAGATGG 718
||||| |||| | |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 656 ACACGAAGGGGAGAACGCCCAAGAGTAAGCTGAGGAACGCTTTGGAGCTTTTGGAGATGG 715
Query 719 AGAAGAAGATGATTGAGGAAGTTCCGGATTTGGAATTTGGGGACAAGACTAAGAGGTTAA 778
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 716 AGAAGAAGATGATTGAGGAAGTTCCCGATTTGGAATTTGGGGATAAGACTAAGAGGTTAA 775
Query 779 GACAGGCTTGCTTCAAGGCTAAATACAAACAGAGACGGCTCTTCTCGTCTTCTTCATGA 837
|||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||
Sbjct 776 GACAGGCTTGCTTCAAGGCTAAATACAAACGGAGAAGGCTCTTCTCATCTTCTTCATGA 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40790127364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5