BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338829
Length=501
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03380.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 265 4e-70
> AT4G03380.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: nuclear assembly factor 1 (TAIR:AT1G03530.1); Has 29
Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr4:1485049-1490228
REVERSE LENGTH=603
Length=603
Score = 265 bits (143), Expect = 4e-70
Identities = 167/179 (93%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 153 GGTACCATATTTGGTAGTTAAGAACAAGGGAGATCACAAACCTTTGAATGTAGGTGCTAT 212
||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 48 GGTACAATATTTGGTAGTTACGAACAAGGGAGATCACAAACCTTTGAATGTAGGTACTAT 107
Query 213 GCTCTTGATCACTGAAACAAAAGCCCCATTGGGTCGTGTGGATGGGTACTTCTTTGGATC 272
||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 108 GCTATTGATCACTGAAACAAAAGTCCCATTAGGTCGTGTGGATGGGTACTTCTTTGGATC 167
Query 273 TGTAACGAATCCTCACTATATTGTGAGATTGGCGGATTCAGAGATGCAAGTCCCTCAAG 331
||||||||||||| |||||||||||| | ||| |||||||||||||||| ||||| |||
Sbjct 168 TGTAACGAATCCTGACTATATTGTGAAAGTGGAGGATTCAGAGATGCAAATCCCTGAAG 226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23911453972
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5