BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338851
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66380.1 | Symbols: MYB114, AtMYB114 | myb domain protein 11... 412 2e-114
AT1G66390.1 | Symbols: ATMYB90, PAP2, MYB90 | myb domain protei... 399 1e-110
> AT1G66380.1 | Symbols: MYB114, AtMYB114 | myb domain protein
114 | chr1:24757413-24758490 FORWARD LENGTH=420
Length=420
Score = 412 bits (223), Expect = 2e-114
Identities = 310/352 (88%), Gaps = 6/352 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGGTTCGTCGAAAGGGTTAAGAAAAGGTGCATGGACTGCTGAAGAAGATAGTCTC 60
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGGTTCGTCCAAAGGGTTGAGGAAAGGTGCATGGACTGCTGAAGAAGATAGTCTC 60
Query 61 TTGAGGCAATGTATTGATAAATATGGAGAAGGCAAATGGAA-CAAACTTCCTTTAAGAGC 119
|||||||| ||||||| ||| |||||||||||||||||| | ||| |||||||||||||
Sbjct 61 TTGAGGCAGTGTATTGGTAAGTATGGAGAAGGCAAATGGCATCAAG-TTCCTTTAAGAGC 119
Query 120 TGGGTTAAACCGATGCAGTAAGAGCTGTAGAGAAAGATGGTTGAACTACTTAAAGCCAAG 179
|||| |||| || ||||| || || |||||| ||||||||| ||||| || ||||||||
Sbjct 120 TGGGCTAAATCGGTGCAGGAAAAGTTGTAGACTAAGATGGTTAAACTATTTGAAGCCAAG 179
Query 180 TATCAAAAGAGGAAAATTTGGCTCGGACGAAGTTGATCTTCTCCTTCGCCTTCATAAGCT 239
|||||| |||||||||||| | || || |||||||||||||| ||||| |||||||||||
Sbjct 180 TATCAAGAGAGGAAAATTTAGTTCTGATGAAGTTGATCTTCTTCTTCGTCTTCATAAGCT 239
Query 240 TTTAGGAAATAGGTGGTCACTC-ATTGCTGGTAGATTGCCTGGTCGAACCGCTAATGATG 298
| |||||||||||||||| || ||||||||| |||| |||||||| |||||||||||||
Sbjct 240 TCTAGGAAATAGGTGGTC-CTTGATTGCTGGTCGATTACCTGGTCGGACCGCTAATGATG 298
Query 299 TCAAGAATTACTGGACCACTCATTTCG-GTAAGAAGCAAGAACCGTGTTGTA 349
||||||| ||||||| ||| ||| | | |||||||||| |||||||||||||
Sbjct 299 TCAAGAACTACTGGAACACCCATCT-GAGTAAGAAGCATGAACCGTGTTGTA 349
> AT1G66390.1 | Symbols: ATMYB90, PAP2, MYB90 | myb domain protein
90 | chr1:24763957-24765541 FORWARD LENGTH=986
Length=986
Score = 399 bits (216), Expect = 1e-110
Identities = 370/443 (84%), Gaps = 15/443 (3%)
Strand=Plus/Plus
Query 1 ATGGAGGGTTCGTCGAAAGGGTTAAGAAAAGGTGCATGGACTGCTGAAGAAGATAGTCTC 60
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 96 ATGGAGGGTTCGTCCAAAGGGTTGAGGAAAGGTGCATGGACTGCTGAAGAAGATAGTCTC 155
Query 61 TTGAGGCAATGTATTGATAAATATGGAGAAGGCAAATGGAA-CAAACTTCCTTTAAGAGC 119
||||||| |||||||||||| |||||||||||||||||| | ||| ||||||| |||||
Sbjct 156 TTGAGGCTATGTATTGATAAGTATGGAGAAGGCAAATGGCATCAAG-TTCCTTTGAGAGC 214
Query 120 TGGGTTAAACCGATGCAGTAAGAGCTGTAGAGAAAGATGGTTGAACTACTTAAAGCCAAG 179
|||| |||| |||||||| ||||| |||||| ||||||||||||||| || ||||||||
Sbjct 215 TGGGCTAAATCGATGCAGAAAGAGTTGTAGACTAAGATGGTTGAACTATTTGAAGCCAAG 274
Query 180 TATCAAAAGAGGAAAATTTGGCTCGGACGAAGTTGATCTTCTCCTTCGCCTTCATAAGCT 239
|||||| ||||||| | || || || |||||||||||||| |||||||||||||||||
Sbjct 275 TATCAAGAGAGGAAGACTTAGCAATGATGAAGTTGATCTTCTTCTTCGCCTTCATAAGCT 334
Query 240 TTTAGGAAATAGGTGGTCACTC-ATTGCTGGTAGATTGCCTGGTCGAACCGCTAATGATG 298
| |||||||||||||||| || ||||||||| ||||||||||||| |||||||||||||
Sbjct 335 TCTAGGAAATAGGTGGTC-CTTGATTGCTGGTCGATTGCCTGGTCGGACCGCTAATGATG 393
Query 299 TCAAGAATTACTGGACCACTCATTTCG-GTAAGAAGCAAGAA-C--CGTGTTGTACTAG- 353
|||| |||||||||| ||| ||| | | |||| || || || | ||||||||| ||
Sbjct 394 TCAAAAATTACTGGAACACCCATCT-GAGTAAAAAACATGAGTCTTCGTGTTGTA--AGT 450
Query 354 C-AAAAC-AAGAAAGAGATATATTACTTGTTCAGCTGCCTCACCAGCCCAAAAACTTAGT 411
| |||| || ||||| | | |||| || | || | |||| | ||||||| | ||
Sbjct 451 CTAAAATGAA-AAAGAAAAACATTATTTCCCCTCCTACAACACCGGTCCAAAAAATCGGT 509
Query 412 GTTATAAAGCCTCGACCTCAATC 434
||| | ||||||||||||| |||
Sbjct 510 GTTTTTAAGCCTCGACCTCGATC 532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37323971221
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5