BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338867
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25030.1 | Symbols: | RING/U-box superfamily protein | chr3... 813 0.0
> AT3G25030.1 | Symbols: | RING/U-box superfamily protein | chr3:9122197-9123502
FORWARD LENGTH=1115
Length=1115
Score = 813 bits (440), Expect = 0.0
Identities = 723/850 (85%), Gaps = 57/850 (7%)
Strand=Plus/Plus
Query 38 ATCTGCTCTTGGATTTCGGATTCTCCTGCAAACGTGAAGACGAAGTTCACA---T--TGG 92
||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |
Sbjct 180 ATCTGCTCTTGGATTTCGGATTCTCCTGCAAACGTAAAGACGAAGTTCACATTCTCATTG 239
Query 93 TTTGTGCTCTGAATCTGTAGTAAAGATGATTCAAATGGACGGTGGAGATAGGGTAAGAGT 152
|||||||| |||||| || | |||||||||||||||||| |||||||||||| | |||||
Sbjct 240 TTTGTGCTTTGAATCGGT-G-AAAGATGATTCAAATGGATGGTGGAGATAGGCTGAGAGT 297
Query 153 GACGTTATTAGATCGTATGTCGACGGTTGAGACTAACCGGAGCTCATTGACGGGATTAAC 212
||| ||||||||||||||||| |||||||||| || |||||| | | | |||||
Sbjct 298 GACTTTATTAGATCGTATGTCAACGGTTGAGAGTAGCCGGAG--C--T-----GTTTAAC 348
Query 213 TCTAGAAGCTATTCTACTAGCTGACAAAAACACAACCTCGCCGC--A-------ACCA-- 261
||| |||||||||||| | ||||| ||||||| ||||||||||| | ||||
Sbjct 349 TCTTGAAGCTATTCTAATGGCTGATAAAAACAGAACCTCGCCGCAGATTCTCTCACCACC 408
Query 262 -CCGTCAAACAACCAATCGAACCGGACACTTCTCGATGTAATGCAAAGAGACCACCGACA 320
||||| | | |||||| |||||| ||||| | || || |||| || || | | |
Sbjct 409 GCCGTCGAGGAGCCAATCTAACCGGTCACTTGTTGAAGTCATGC-AA-AG---A--G--A 459
Query 321 CGACGACCGACACAATCGAGACAAAACCACTTGGGAAACTCTCCGTGAAAAGCTACGTCT 380
| | ||||||||| | |||| |||||| ||||| ||| ||||||||||||||| |||||
Sbjct 460 -G-C-ACCGACACAGTAGAGATAAAACCGCTTGGAAAAGTCTCCGTGAAAAGCTCCGTCT 516
Query 381 CAAACGTAACGCTACTGTTTGGATCTCGTCTAATCCTATCCCGACTTTGGATAATCCTAT 440
|||||||||| | |||||||||||||||||||| ||||||||| |||||||| |||||
Sbjct 517 TAAACGTAACGGTTCTGTTTGGATCTCGTCTAATTCTATCCCGAGTTTGGATACGCCTAT 576
Query 441 TCCTACCCGGGATAACGTTAGCCACCAACTCGGTTTCCT-CTTGTCTACCACCGGAAATG 499
||||| |||||||||||||||||||||||| |||||||| ||| |||| | | |||||||
Sbjct 577 TCCTAACCGGGATAACGTTAGCCACCAACTTGGTTTCCTCCTT-TCTAACTCTGGAAATG 635
Query 500 TAACGGAGGAAGTC-TCGTCGGTAGAGGGAA-GAGTTCAGCTAGGAGCTGTATTGGCAGA 557
|||| ||||||| | |||||||| ||||||| || ||| | |||||||||| ||||||||
Sbjct 636 TAACAGAGGAAG-CTTCGTCGGTGGAGGGAAGGA-TTCGGTTAGGAGCTGTGTTGGCAGA 693
Query 558 GGAGAGAGCATTATCGGCTAGAGAAGAGGAAACGCAG-CTGGAGAGGGAAGTGGAGCCGG 616
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 694 GGAGAGAGCATTATCGGCTAGAGAAGAGGAAACGCCGGC-GGAGAGGGAAGTGGAGCCGG 752
Query 617 CGAGGATGTCTTTAATGGAGTTGTTGGAAGAGAATGAAGGGCAAATTAGTTTGGTAAGTG 676
|||||||||| || |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 753 CGAGGATGTCATTGATGGAGTTGTTGGAAGAGAATGAAGGGCAAATGAGTTTTGTAAGTG 812
Query 677 TTGACGGAGAGGCGGAGGAGGTGGCGGCGGCGGAGACTGTGGCGGTGGCGGAGATAAGTT 736
| ||||||||||||||||||| || |||||| | ||| | | ||| ||||||||||||
Sbjct 813 TCGACGGAGAGGCGGAGGAGGAGGTGGCGGCAGTGAC-G-G-CGG---CGGAGATAAGTT 866
Query 737 GTTGTGTGTGTATGAA-AGAAGCAAAGGAGCGGCGTTTATTCCATGTGGTCATACGTTTT 795
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 867 GTTGTGTGTGTATGGTTAGAAGCAAAGGAGCTGCGTTTATTCCGTGTGGTCATACGTTTT 926
Query 796 GTAGGTTGTGTTCAAGAGAG-TTTCGAGTTCAAAGAGGAGACTGTCCTCTTTGTAATACA 854
||||||||||||| |||||| ||| | |||||||||||| |||||||||| ||||||||
Sbjct 927 GTAGGTTGTGTTCTAGAGAGCTTTGG-GTTCAAAGAGGAAACTGTCCTCTCTGTAATACC 985
Query 855 ACAATTTTAG 864
||||||||||
Sbjct 986 ACAATTTTAG 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5