BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg338893

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G23290.1 | Symbols: PFD5 | prefoldin 5 | chr5:7846081-784764...   544    3e-154


> AT5G23290.1 | Symbols: PFD5 | prefoldin 5 | chr5:7846081-7847643 
FORWARD LENGTH=734
Length=734

 Score =  544 bits (294),  Expect = 3e-154
 Identities = 333/352 (95%), Gaps = 2/352 (1%)
 Strand=Plus/Plus

Query  1    ATGGTGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATCAGCTGAAGGCG  60
            |||| |||||||||||||||||||||||||||||||||||||||||||||||| || || 
Sbjct  64   ATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATCAGCTAAAAGCT  123

Query  61   TTAAAGGAGCAAGCAGATCTGGAAGTGAATCTCCTTCAAAATAGTCTTAACAGCATCCGT  120
            || ||||||||||||||||||||||||||||| |||||| ||||||| |||| |||||||
Sbjct  124  TTGAAGGAGCAAGCAGATCTGGAAGTGAATCTTCTTCAAGATAGTCTCAACAACATCCGT  183

Query  121  ACAGCCACCGTCCGTCTTGATGCTGCCGCCGCAGCTCTCAACGATCTCTCTCTTCGACCT  180
            ||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  184  ACAGCTACCGTTCGTCTCGATGCCGCCGCCGCAGCTCTCAACGATCTCTCTCTTCGACCT  243

Query  181  CAAGGTAAGAAGATGCTTGTACCACTGACTGCTTCTCTATACGTTCCTGGGACACTTGAT  240
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  244  CAAGGTAAGAAGATGCTTGTACCACTGACTGCTTCTCTATACGTGCCTGGGACACTTGAT  303

Query  241  GAAGCTGATAAGGTTTTGGTTGATATTGGCACTGGTTACTTCGTCGAGAAAACAATGGAT  300
            ||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct  304  GAAGCTGATAAGGTTTTAGTTGATATTGGCACTGGTTACTTCATTGAGAAAACAATGGAT  363

Query  301  GATGGAAAAGATTATTGTCAGAGGAAGATTCA-CTTGCTCAAATCCAACTTT  351
            ||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct  364  GATGGAAAAGATTATTGTCAGAGGAAGAT-CAACTTGCTCAAATCCAACTTT  414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16739160417


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5