BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338904
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18340.1 | Symbols: | F-box and associated interaction doma... 691 0.0
AT2G07120.1 | Symbols: | F-box associated ubiquitination effec... 686 0.0
AT3G44130.1 | Symbols: | F-box and associated interaction doma... 375 3e-103
AT3G17710.1 | Symbols: | F-box and associated interaction doma... 233 2e-60
AT3G16555.1 | Symbols: | F-box family protein | chr3:5633426-5... 143 3e-33
> AT3G18340.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6294018-6295134 FORWARD LENGTH=1086
Length=1086
Score = 691 bits (374), Expect = 0.0
Identities = 511/577 (89%), Gaps = 10/577 (2%)
Strand=Plus/Plus
Query 392 TTGATT-CCCTGGATTGGCCAATGCTGGCAGGTTTAGGTGAATATGTGTCCTTGAACGGA 450
|||||| |||| || ||||||| |||||||||| ||||||||||||||||||||| |||
Sbjct 518 TTGATTCCCCT-GAATGGCCAACGCTGGCAGGTCGAGGTGAATATGTGTCCTTGAATGGA 576
Query 451 AATTTGTATTGGACTTCTTACAATGAAGAGACTCGTGAGTATTTTCTCGGAAGCTTTGAT 510
||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct 577 AATTTGTATTGGACTGCTTACAATGAAGATACTCGTGAGCATTTTCTTGGAAGCTTTGAT 636
Query 511 TTCTCCACGGAAATATCGATGCGCTTTTGTCTCCCTCCTTGTGGGAAGCATGTTTCTGGC 570
||||||||||||||||| |||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 637 TTCTCCACGGAAATATCCATGCACTTTTGTCTCCTTCCTTGTGCGAAGCATGTTTCTGGC 696
Query 571 TCACTATATAAACTTGTCCTCACTGTATTTAAGGGAGATAGGTTTGCATTGTTAAAGCAA 630
| || | |||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 697 TTACAAGATAAACTTGTCCTCACTGTATTTAAGGGCGATCGGTTTGCATTGTTAAAGCAA 756
Query 631 TCTCGTATATCAAGGAATACAGAGGTTTGGGTAACAAAGGAGAAGATTAACAATTGTAAT 690
|||||||||||||| ||||||||| |||||||||||||||| ||||||||| | |||||
Sbjct 757 TCTCGTATATCAAGTAATACAGAGATTTGGGTAACAAAGGACAAGATTAACTCTAGTAAT 816
Query 691 AAGGATGACGTGGTGTGGTTAAACTTGATGACACTGTCAATACCTAACTTTCCTTCGCTA 750
|| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 817 AA------CGTGGTGTGGTTAAACTTGATGACACTGTCAATACCTGACTTTCCCTCGCTA 870
Query 751 TTCAATCAGTTTTCTGGTATTAGATACTTCATTTATGACAAGACCCTTATCATGTGTTGT 810
||| ||||| |||||| |||||| |||||||| |||||| |||||||||| |||| |||
Sbjct 871 TTCCATCAGCTTTCTGATATTAGTTACTTCATCCATGACATGACCCTTATCCTGTGCTGT 930
Query 811 GGCGCCGATCAAACCGGAGTGGCTTGCATCTTTATTGCGAGGGGAGACATGTGCAAGAAG 870
| || | ||||||| ||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 931 GACGACAATCAAACTGGAGTGGGTTGCATCTTTATTGCGAGGGGAGACTTGTGCAAGAAG 990
Query 871 ATTCAAATAGGTTCTGGCTTTGATCATTTTTCTCACTGTGTCTATCTTCCAAATTTGATC 930
||||||||| || || || | | |||||||| |||||||||||||||| ||||| |
Sbjct 991 ATTCAAATAAATTATGTCTCTCTTGGGTTTTCTCAATGTGTCTATCTTCCAAGTTTGACC 1050
Query 931 TCGGTTCCTTCTG-AATTCAAATCAGTGCAAGTTTAG 966
|||||||||| || |||||| |||| |||||||||||
Sbjct 1051 TCGGTTCCTT-TGGAATTCAGATCACTGCAAGTTTAG 1086
> AT2G07120.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:2953605-2954722 REVERSE LENGTH=1062
Length=1062
Score = 686 bits (371), Expect = 0.0
Identities = 510/577 (88%), Gaps = 10/577 (2%)
Strand=Plus/Plus
Query 392 TTGATTCCCTGGATTGGCCAATGCTGGCAGGTTTAGGTGAATATGTGTCCTTGAACGGAA 451
||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 494 TTGATTCCCCGGAATGGCCAATGCTGGCAGGTCGAGGTGAATATGTGTCCTTGAATGGAA 553
Query 452 ATTTGTATTGGACTTCTTACAATGAAGAGACTCGTGAGTATTTTCTCGGAAGCTTTGATT 511
|||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 554 ATTTGTATTGGACTGCTTACAATGAAGATACTCGTGAGCATTTTCTCGGAAGCTTTGATT 613
Query 512 TCTCCACGGAAATATCGATGCGCTTTTGTCTCCCTCCTTGTGGGAAGCATGTTTCTGGCT 571
||||||| |||||||| |||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 614 TCTCCACAGAAATATCCATGCACTTTTGTCTCCTTCCTTGTGGGAAGCATGTTTCTGGCT 673
Query 572 CACTATATAAACTTGTCCTCACTGTATTTAAGGGAGAT-AGGTTTGCATTGTTAAAGCAA 630
|| | |||||||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 674 TACGAGATAAACTTGTCCTCACTGTATTTAAGGGCGATCA-GTTTGCATTGTTAAAGCAA 732
Query 631 TCTCGTATATCAAGGAATACAGAGGTTTGGGTAACAAAGGAGAAGATTAACAATTGTAAT 690
|||||||||||||| ||||||||| ||||||||||||| || | ||||||| | |||||
Sbjct 733 TCTCGTATATCAAGTAATACAGAGATTTGGGTAACAAATGACATGATTAACTCTAGTAAT 792
Query 691 AAGGATGACGTGGTGTGGTTAAACTTGATGACACTGTCAATACCTAACTTTCCTTCGCTA 750
| || |||||||||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct 793 -A--AT---GTGGTGTGGTTAAACTTGATGACACTGTCAATACCTGATTTTCCCTCGCTA 846
Query 751 TTCAATCAGTTTTCTGGTATTAGATACTTCATTTATGACAAGACCCTTATCATGTGTTGT 810
||| ||||| |||||| |||||| |||||||| |||||| |||||||||| |||| |||
Sbjct 847 TTCCATCAGCTTTCTGATATTAGTTACTTCATCCATGACATGACCCTTATCCTGTGCTGT 906
Query 811 GGCGCCGATCAAACCGGAGTGGCTTGCATCTTTATTGCGAGGGGAGACATGTGCAAGAAG 870
| || | ||||||| ||||||| ||||||||||||||||||||||||| | |||||||||
Sbjct 907 GACGACAATCAAACTGGAGTGGGTTGCATCTTTATTGCGAGGGGAGACTTCTGCAAGAAG 966
Query 871 ATTCAAATAGGTTCTGGCTTTGATCATTTTTCTCACTGTGTCTATCTTCCAAATTTGATC 930
|||||||||| ||||| || | | |||||||| |||||| ||||||||| ||||| |
Sbjct 967 ATTCAAATAGATTCTGTCTCTCTTGGGTTTTCTCAATGTGTCCATCTTCCAAGTTTGACC 1026
Query 931 TCGGTTCCTTCTG-AATTCAAATCAGTGCAAGTTTAG 966
|||||||||| || |||||| |||| |||||||||||
Sbjct 1027 TCGGTTCCTT-TGGAATTCAGATCACTGCAAGTTTAG 1062
Score = 167 bits (90), Expect = 2e-40
Identities = 133/154 (86%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 185 TTT-ATTCGACGATAGAGGTGAATGAACTAGCCTCTGAATTACATTTTGAGGCTAAGAAG 243
||| || ||| |||||||||| ||| ||||||| | |||| |||||| ||||| |||||
Sbjct 160 TTTGATCCGAAGATAGAGGTGCGTGAGCTAGCCTGTCAATTTCATTTTAAGGCTGAGAAG 219
Query 244 TCGACATATACCCGTATCACGGCTTGCGATGGATTATTGTTTCGTCACTTTTGGATGCAA 303
| | ||| |||| | |||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 220 TGGGCATTTACCAGGATCACGGCTTGCGATGGATTATTGTTTCGTGACTTTTGGAACCAA 279
Query 304 GGGGTTACCATTTGGAATCCATGTTTGAGACAGG 337
||||||||||||||||||||||| || |||||||
Sbjct 280 GGGGTTACCATTTGGAATCCATGGTTAAGACAGG 313
> AT3G44130.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:15881870-15883638 FORWARD LENGTH=942
Length=942
Score = 375 bits (203), Expect = 3e-103
Identities = 242/261 (93%), Gaps = 2/261 (1%)
Strand=Plus/Plus
Query 392 TTGATTCCCTGGATTGGCCAATGCTGGCAGGTTTAGGTGAATATGTGTCCTTGAACGGAA 451
||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 545 TTGATTCCCCGGAATGGCCAATGCTGGCAGGTCGAGGTGAATATGTGTCCTTGAATGGGA 604
Query 452 ATTTGTATTGGACTTCTTACAATGAAGAGACTCGTGAGTATTTTCTCGGAAGCTTTGATT 511
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 605 ATTTGTATTGGACTGCTTACAATGAAGAGACTCGTGAGCATTTTCTCGGAAGCTTTAATT 664
Query 512 TCTCCACGGAAATATCGATGCGCTTTTGTCTCCCTCCTTGTGGGAAGCATGTTTCTGGCT 571
|||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||
Sbjct 665 TCTCCACGGAAATATCCATGCGCTTTTGTCTCCTTCCTTGTGCGAAGCATGTTTCTGGCT 724
Query 572 CACTATATAAACTTGTCCTCACTGTATTTAAGGGAGATAGGTTTGCATTGTTAAAGCAAT 631
|| | |||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 725 TACGAGATAAACTTGTCCTCACTGTATTTAAGGGCGATCGGTTTGCATTGTTAAAGCAAT 784
Query 632 CTCGTATATCAA-GGAATACA 651
|||||||||||| ||| ||||
Sbjct 785 CTCGTATATCAAAGGA-TACA 804
> AT3G17710.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6055548-6056778 FORWARD LENGTH=1231
Length=1231
Score = 233 bits (126), Expect = 2e-60
Identities = 410/539 (76%), Gaps = 52/539 (10%)
Strand=Plus/Plus
Query 437 TGTCCTTGAACGGAAAT-TTGTATTGGACTT-CT--T-ACAATGAAGAGACTCGTGAGTA 491
||||| ||||||| ||| || |||||| ||| || | || | ||||||| ||||||
Sbjct 642 TGTCCGTGAACGGGAATCTT-TATTGG-CTTGCTCATAACCACCCTGAGACTCTTGAGTA 699
Query 492 TTTTC-TCGGAAGCTTTGATTTCTCCACGGA-AATATCGATGCGCTTTTGTCTCCCT-CC 548
|||| ||| || |||||||||||||| ||| | | || | | ||||||||| || ||
Sbjct 700 -TTTCATCGAAACCTTTGATTTCTCCATGGAGATTTTC-AAACCCTTTTGTCT-ACTGCC 756
Query 549 TTGTGGGAAGCATGTTTCTGGCTCA-CTATATAAACTTGTCCTCACTGTATTTAAGGGAG 607
||| ||||| | || ||| | | | | || |||||||||| | || ||||||| ||
Sbjct 757 GTGTCGGAAGGA--CTT-TGG-T-AGC-A-ATGAACTTGTCCTGGCGGTTTTTAAGGAAG 809
Query 608 ATAGGTTTGCATTGTTAAAGCAAT-C-TCGTATATCAAGGAATACAGAGGTTTGGGTAAC 665
|| ||||| ||||||||||||||| | ||| | | ||| ||| | ||| ||||||||||
Sbjct 810 ATCGGTTTTCATTGTTAAAGCAATGCTTCG-A-AACAACGAAGATTGAGATTTGGGTAAC 867
Query 666 AAAGGA-GAAGATTAACAATTGTAATAAGGATGACGTGGTGTGGTTAAACTTGATGACAC 724
||| || ||||||| || | | |||| || ||||||||| |||| || ||||||
Sbjct 868 AAA-GATGAAGATT---GATAG--A-GAGGAGGAAGTGGTGTGGATAAAGTTTATGACAT 920
Query 725 TGTC-A-ATACCTAACTTTCCTTCGCTA-TTCAATCAGTT-TTCTGGTATTAGATACTTC 780
|| | | | ||| ||||| ||| ||| | || | || || | | | ||| ||||||
Sbjct 921 TGCCGACA-ACC-AACTTGCCTAATCTAGAT-GAT-ACTTATTGTTGCAGTAGTTACTTC 976
Query 781 AT-TTATGACAAGACCCTTATCATGTGTTGTGGCGCCGATC-AAACCGGAG-TGGCTTGC 837
|| || |||||||||| | |||||||||||||||| | | |||| |||| | |||||
Sbjct 977 ATCTT-TGACAAGACCATAATCATGTGTTGTGGCGATTA-CAAAACTGGAGCT-ACTTGC 1033
Query 838 ATCTTTATTGCGAGGGGAGACATGTGCAAGAAGATTCAAAT-AGGTTCT-GGCTTTGATC 895
|||| ||| | ||||||||| |||| |||||||||||| || | |||| || ||| ||
Sbjct 1034 ATCTATATGGTGAGGGGAGATATGTTCAAGAAGATTCAGATCA-ATTCTGGGATTT-TTC 1091
Query 896 ATTTTTCTCACTGTGTCTATCTTCCAAATTTGATCTCGGTTCCTTCTGAATTCAAATCA 954
| |||||| |||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 1092 AGTTTTCTTACTGTGTCTATCTTCCAAATTTGATCTCGGTTCCTTTTGAAT-CACATCA 1149
Score = 202 bits (109), Expect = 6e-51
Identities = 164/189 (87%), Gaps = 10/189 (5%)
Strand=Plus/Plus
Query 1 ATGGCGTCGGGGAAGCTT-CCGCGGGAGTTGGAGGAAGAGATACTGTCTCGGCTTCCACC 59
|||||||||| |||| || ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 50 ATGGCGTCGGTGAAG-TTGCCGTGGGATTTGGAGGAAGAGATACTGTCTCGGCTTCCACC 108
Query 60 TCGATCTCTTGTTCGGTTCAG-ATCTGTATGTAAACACTGGAAACA-TCTTTTCAACGAC 117
||||||||||||||||||||| | | ||||||||||||||||| | |||||||| ||||
Sbjct 109 TCGATCTCTTGTTCGGTTCAGGACC-GTATGTAAACACTGGAA-CGGTCTTTTCAGCGAC 166
Query 118 AAAAGGTTCATCAACAA-CAGCTTAGCTC-GTGCCCGTCCCCAATTCATCATCCTGACCA 175
|| ||||| |||| || || ||| | || |||||||||||||||||||| |||| |||
Sbjct 167 AAGAGGTTTGTCAAAAAGCA-CTTGG-TCCGTGCCCGTCCCCAATTCATCTTCCTTACCG 224
Query 176 AATCCAAGA 184
|||| ||||
Sbjct 225 AATCGAAGA 233
> AT3G16555.1 | Symbols: | F-box family protein | chr3:5633426-5634542
FORWARD LENGTH=1050
Length=1050
Score = 143 bits (77), Expect = 3e-33
Identities = 148/182 (81%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 15 GCTTCCGCGGGAGTTGGAGGAAGAGATACTGTCTCGGCTTCCACCTCGATCTCTTGTTCG 74
|||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 9 GCTTCCATGGGAGCTGGAGGAAGATATACTGTCTCGGCTTCCACCTCGATCTCTTGTTCA 68
Query 75 GTTCAGATCTGTATGTAAAC-ACTGGAAA-CATCTTTTCAACGACAAAAGGTTCATCAAC 132
|||||||| || || |||| | ||||| | |||||| | | ||||| |||| |||
Sbjct 69 ATTCAGATCGGTTTGCAAACGA-TGGAATGC-TCTTTTTGATGTTAAAAGTTTCAACAAG 126
Query 133 AAC-AGCTTAGCTCGTGCCCGTCCCCAATTCATCATCCTGACCAAATCCAAGATTTATTC 191
|| || || |||||||| ||||| || |||||| || | ||| | ||||||||||||||
Sbjct 127 GACCAG-TTCGCTCGTGCTCGTCCTCAGTTCATCTTCATTACCGATTCCAAGATTTATTC 185
Query 192 GA 193
||
Sbjct 186 GA 187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5