BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338905
Length=4242
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66730.1 | Symbols: AtLIG6, LIG6 | DNA LIGASE 6 | chr1:24884... 3402 0.0
> AT1G66730.1 | Symbols: AtLIG6, LIG6 | DNA LIGASE 6 | chr1:24884681-24892046
FORWARD LENGTH=4724
Length=4724
Score = 3402 bits (1842), Expect = 0.0
Identities = 2377/2623 (91%), Gaps = 85/2623 (3%)
Strand=Plus/Plus
Query 1 ATGGCCACCGATTCCAG-CGGAGTCACAATCTCCGGCAACTTCCCAAA-TGACGAGAACG 58
|||||| | |||||| | ||||| ||||||||||||||||||| |||| | ||| |||
Sbjct 311 ATGGCCTCTGATTCC-GCCGGAGCCACAATCTCCGGCAACTTCTCAAACT-CCGACAACT 368
Query 59 CAGAAACCCTAAACCTCGACACTACAG-AACTCTACTCATCAGCAATATCCTCCGTCTCT 117
||||||||||||| ||| ||||||| | ||||||||||||||||||| ||||| |||||
Sbjct 369 CAGAAACCCTAAATCTCAACACTAC-GAAACTCTACTCATCAGCAATTTCCTCTATCTCT 427
Query 118 CCACAATTTCCCC-CACCGAAACCACCGTTC-TCATCTCTTTCAATCCCTCAA-TCAAAA 174
|||||| |||||| ||||||||||| | || |||| || |||||||||| || ||||||
Sbjct 428 CCACAA-TTCCCCTCACCGAAACCAAC-ATCTTCATGTCCTTCAATCCCT-AATTCAAAA 484
Query 175 CGAATCCCTAAGACTAACTTCATCGTCGATCTCTTCCGCTTCCCACAACATTCCTCCACC 234
||||||||||| ||||||||||||||||||||||||||| ||||||| || || | ||
Sbjct 485 CGAATCCCTAATACTAACTTCATCGTCGATCTCTTCCGCCTCCCACACCAATCAT---CC 541
Query 235 TCCGTCGCTTTCTTCCTCTCACATTTCCATTCCGATCACTATTCCGGTCTCTCCTCTACT 294
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
Sbjct 542 TCCGTCGCTTTCTTCCTCTCACATTTCCACTCCGATCACTACTCCGGTCTCTCCTCTTCC 601
Query 295 TGGTCTAAAGGAATTATCTTCTGCTCACACAAAACCGCTCGTCTCGTCGAAGAAATCCTT 354
||||| |||||||| |||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 602 TGGTCCAAAGGAATAATCTACTGCTCACACAAAACCGCTCGTCTCGTTGCAGAAATCCTT 661
Query 355 CAAGTTCCTTCACAATTCGTCTTCGCTTTACCTATGAACCAAATGGTTATGATCGATGGC 414
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 662 CAAGTTCCTTCACAATTCGTTTTCGCTTTACCTATGAACCAAATGGTTAAGATCGATGGC 721
Query 415 TCTGAAGTTGTGTTGATTGAAGCAAATCACTGTCCAGGAGCGGTACAGTTTTTGTTTAAA 474
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 722 TCTGAAGTTGTGTTGATTGAAGCTAATCATTGTCCAGGAGCGGTACAGTTTTTGTTTAAA 781
Query 475 GTCAAATTAGAGAACGA-TGGATTTGAGAGGTATGTTCATACTGGAGATTTCAGATTCTG 533
||||||||||||| | | ||||||||| | ||||||||||||||||||||| ||||||||
Sbjct 782 GTCAAATTAGAGAGC-AGTGGATTTGAAAAGTATGTTCATACTGGAGATTTTAGATTCTG 840
Query 534 TGATGAGATGAGATTTGATTCGTTTCTTAGTGGTTTTATTGGATGTGATGGTGTTTTTCT 593
||||||||||||||||||| ||||||||| ||||||| |||| |||||||||||||||||
Sbjct 841 TGATGAGATGAGATTTGATCCGTTTCTTAATGGTTTTGTTGGTTGTGATGGTGTTTTTCT 900
Query 594 GGATACTACTTATTGTAATCCTAAGTTTGTTTTTCCGACG-CAAGAGGAATCTGTTGGTT 652
||||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||
Sbjct 901 CGATACTACTTATTGTAATCCTAAGTTTGTTTTTCCGA-GTCAAGAAGAGTCTGTTGGTT 959
Query 653 ATGTTGTTAGTGTGATAGATAAGATTGATGGTGAGTGTGTGGAGACGAAGAAGAAGGTTT 712
|||||||||||||||||||| | | ||| | | || || | | |||||||||
Sbjct 960 ATGTTGTTAGTGTGATAGAT-A-A--GAT--T-A----GT---GA-G--G-AGAAGGTTT 1001
Query 713 TGTTTCTTGTTGCTACTTATGTTATTGGTAAAGAGAAGATTTTGGTTGAGATTGCTAGGA 772
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1002 TGTTTCTTGTAGCTACTTATGTTGTTGGTAAAGAGAAGATTTTGGTTGAGATTGCTAGGA 1061
Query 773 GATGTAAGAGGAAAATTGTTGTGGATCTC-AGGAAGATGTCGATTTTG-GGGATTTTGGG 830
|||||||||||||||| ||||| ||| | || ||||||||||| ||| || |||||||
Sbjct 1062 GATGTAAGAGGAAAATCGTTGTCGAT-GCGAGAAAGATGTCGATGTTGTCGG-TTTTGGG 1119
Query 831 GTGTGGGGA-GAGTGGAATGTTTACGGAGGATGTGAATGTGAGTGATGTTCATGTTGTGG 889
|||||| || ||| ||||||||||| || |||| ||||| ||||||||||||||||||||
Sbjct 1120 GTGTGGTGAGGAG-GGAATGTTTACTGAAGATGAGAATGAGAGTGATGTTCATGTTGTGG 1178
Query 890 GGTGGAATGTGTTGGGAGAGACTTGGCCGTATTTTCGGCCGAATTTTGTGAAGATGAATG 949
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1179 GGTGGAATGTGTTGGGTGAGACTTGGCCGTATTTTAGGCCGAATTTTGTGAAGATGAATG 1238
Query 950 AGATTATGGTCGAGAAAGGGTATGATAAGGTTGTAGGTTTTGTGCCTACAGGGTGGACTT 1009
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 AGATTATGGTTGAGAAAGGGTATGATAAGGTTGTAGGTTTTGTGCCTACAGGGTGGACTT 1298
Query 1010 ATGAAGTGAAGCGGAATAAGTTTGCCGTTAGGTTTAAAGATTCGATGGAGATTCATCTTG 1069
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1299 ATGAAGTGAAGCGGAATAAGTTTGCGGTTAGGTTTAAAGATTCGATGGAGATTCATCTTG 1358
Query 1070 TACCGTATAGTGAGCATTCGAACTATGATGAGCTTAGAGAGTACATAAAGTTCTTGAAAC 1129
|||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||
Sbjct 1359 TACCGTATAGTGAGCATTCGAATTATGATGAACTTAGAGAGTTTATAAAGTTCCTGAAAC 1418
Query 1130 CTAAAAGAGTTATTCCTACAGTTGGAGTTGATATCGAGAAGCTTGATAGCAAGGAGGTTA 1189
||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||||||||
Sbjct 1419 CTAAAAGAGTTATTCCTACTGTTGGAGTTGATATTGAGAAGTTTGATTGCAAGGAGGTTA 1478
Query 1190 ATAAGATGCAGAAACATTTTTCTGGATTGGTAGATGAAATGGCAAACAAGAAAGATTTTT 1249
||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1479 ATAAGATGCAGAAGCATTTCTCTGGATTGGTTGATGAGATGGCAAACAAGAAAGATTTTT 1538
Query 1250 TATTGGGTTTCTATTGCCAGTCTTACCAGAAGAATGAGAAAAATGACGTAGATGTTGTGT 1309
|||||||||||||| | ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1539 TATTGGGTTTCTATCGTCAGTCTTACCAGAAGAATGAGAAAAGTGATGTAGATGTTGTGT 1598
Query 1310 CAGGCT-TGGCTGAGGTCTACGCAGGGGAAGATAAAAATGCATGTGAAGACGGTGGAGAT 1368
|| | || ||||||| |||| || |||||| ||||||||||||||||||||||||||
Sbjct 1599 CACACAGTG-CTGAGGTTTACGAAGAGGAAGAGAAAAATGCATGTGAAGACGGTGGAGAG 1657
Query 1369 AATGTTCCATCATCTAGAGGACCCTTATTGCATGATACAGCTCCAAGTAGTGATTCTTCG 1428
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1658 AATGTTCCATCATCTAGAGGACCCATATTGCATGATACAACTCCAAGTAGTGATTC---- 1713
Query 1429 GTGACCGAAAGATTGCTTG-TAGAACTACGTGATTCTTTGCCTGCTTGGGTCACTGAAGA 1487
| | ||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 1714 ---A---A--GATTGCT-GATAAAACTACGTGATTCTTTGCCTGCTTGGGTCACTGAAGA 1764
Query 1488 GCAGATGTTA-ATTCTGATTAAGAAGCATGCTGGTAATCCCGTGGAAATAGTTAGTAACT 1546
|||||||||| || |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1765 GCAGATGTTAGAT-CTGATTAAGAAGCATGCTGGTAATCCCGTGGATATAGTAAGTAACT 1823
Query 1547 TTTATGAATGTGAAGCAGAGCTTTACAAGCAATCCTCTCTTCCCACGCTTTCCTTGGAA- 1605
||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 1824 TTTATGAATATGAAGCAGAGCTTTACAAGCAAGCCTCTCTTCCCACGCCTTCCTTG-AAT 1882
Query 1606 AATCAGCCTGTTTTGTTTGATGACGATGTAACAGACTTGCAACCAAATCCTGTGAAGAG- 1664
|||||| ||||||||||||||||||||||||| ||| | ||||| ||||||||||| ||
Sbjct 1883 AATCAGGCTGTTTTGTTTGATGACGATGTAACCGACCTCCAACCTAATCCTGTGAA-AGG 1941
Query 1665 CACTTGTCCAGATGTTCAAGCAGTTCAAGAAGGTTTTGACTTACCaaaaaaaaTGAATTT 1724
|| ||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct 1942 CATTTGTCCAGATGTTCAAGCAATTCAAAAAGGTTTTGACTTACCAAGAAAAATGAATTT 2001
Query 1725 AACAAAGGGTACTATTTCTCCTGGGAAAAGAGGCAAAAGCTCGGGCAGTAAATCGAACAA 1784
||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 2002 AACAAAGGGTACTATTTCTCCTGGGAAGAGAGGCAAAAGCTCGGGCAGTAAGTCAAACAA 2061
Query 1785 GAAGGCCAAGAAAGATCCAAAATCAAGACCAGTTAGTCCAAGGCAGCCAAC-CATTTTTA 1843
|||||||||||||||||||||||||| ||||||| ||||| |||||||||| | ||||||
Sbjct 2062 GAAGGCCAAGAAAGATCCAAAATCAAAACCAGTTGGTCCAGGGCAGCCAACAC-TTTTTA 2120
Query 1844 AGTTCTTCAATAAGGTCTTGGATAGTGGATCTAATTCTGTTGGTGTTGGATCAGAGACTG 1903
|||| |||||||||||||| ||| ||||||||||||||||| ||||||| ||||||||||
Sbjct 2121 AGTTTTTCAATAAGGTCTTAGATGGTGGATCTAATTCTGTTAGTGTTGGTTCAGAGACTG 2180
Query 1904 AAGAGTGTAATACAGATAAAAAGATGGGCCACAATGATGCTACAGAAGCATACAAAGAAG 1963
|||| || ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 2181 AAGAATGCAATACAGATAAAAAGATGGTCCACATTGATGCTTCAGAAGCATACAAAGAAG 2240
Query 1964 TGACAGATCAATTTATTGATATTGTTAATGGCTCTGAATCTCTAAGAGATTATGCTGCTT 2023
|||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||
Sbjct 2241 TGACAGATCAATTTATTGATATTGTTAACGGTTCTGAATCTTTAAGAGATTATGCTGCTT 2300
Query 2024 CCATCATTGATGAGGCTAAAGGAGATATAAATAGGGCACTGAACATCTATTACAGTAA-C 2082
|||||||||||||||||||||||||||||| ||||||||||||||||||||| || || |
Sbjct 2301 CCATCATTGATGAGGCTAAAGGAGATATAAGTAGGGCACTGAACATCTATTATAGCAAAC 2360
Query 2083 CCC---A--TACCTGGTGA----G--GG--AG-GA---CTCTCCAGCAAATCAATTCAGT 2125
||| | |||||||||| | || || || ||||| |||||| |||||||||
Sbjct 2361 CCCGTGAAATACCTGGTGACCATGCAGGTGAGAGAGGACTCTCTAGCAAAACAATTCAGT 2420
Query 2126 TTTCGCATTGTCCAGAAGCGTGTTCCTCTCAGGAGGGGAAACAGGCGTCAGAAAAGTCAG 2185
| || | ||| ||||||| || ||||||||||||| ||| |||| |||||||| ||||
Sbjct 2421 ATCCGAAATGTTCAGAAGCATGCTCCTCTCAGGAGGACAAAAAGGCTTCAGAAAATTCAG 2480
Query 2186 GACATGCAGTCAACATATGTGTGCAGTCATCAGCAGAGGAAATTGTGGACAAAAATTATG 2245
||||||||||||||||||| |||||| ||||||||||||||| ||| ||||| |||||||
Sbjct 2481 GACATGCAGTCAACATATGCGTGCAGACATCAGCAGAGGAAAGTGTAGACAAGAATTATG 2540
Query 2246 TATCTCTACCTCCTGAACAATATAAACCTAAAGAACACGCCTGTTGGAGGGATGGACAGC 2305
||||||||||||||||| ||||| |||||||||| ||||| ||||||||||| |||||||
Sbjct 2541 TATCTCTACCTCCTGAAAAATATCAACCTAAAGAGCACGCTTGTTGGAGGGAGGGACAGC 2600
Query 2306 CTGCTCCATATATCCACCTAGTCCGAACATTTGCTTCCGTTGAAAGTGAAAAGGGAAAGA 2365
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2601 CTGCTCCATATATCCACCTTGTCCGAACATTTGCTTCTGTTGAAAGTGAAAAGGGAAAGA 2660
Query 2366 TCAAAGCTATGTCTATGCTTTGCAACATGTTTAGAAGCTTGTTTGCTCTCTCTCCAGAAG 2425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2661 TCAAAGCTATGTCTATGCTTTGCAACATGTTTAGAAGCTTGTTTGCTCTCTCTCCAGAAG 2720
Query 2426 ATGTTCTGCCCGCTGTTTATCTTTGCACAAATAAGATTTCGGCTGACCATGAGAATATTG 2485
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 2721 ATGTTCTGCCCGCTGTTTATCTTTGCACAAATAAGATTGCCGCTGACCATGAGAATATTG 2780
Query 2486 ATCTTAACATTGGTGGAAGTCTAATCTCTTCTGCATTGGAAGAAGCATGTGGAATAAGTC 2545
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2781 AGCTTAACATTGGTGGAAGTCTAATCTCTTCTGCATTGGAAGAAGCATGTGGAATAAGTC 2840
Query 2546 GGCCTACTGTGAGGGATATGTATAATAGCACCGGAGATCTTGG 2588
|| |||||||||| ||||||||||||||| || ||||||||
Sbjct 2841 GGTCTACTGTGAGAGATATGTATAATAGCTTGGGGGATCTTGG 2883
Score = 2407 bits (1303), Expect = 0.0
Identities = 1521/1627 (93%), Gaps = 12/1627 (1%)
Strand=Plus/Plus
Query 2622 TGGAGATGTTGCGCAGCTATGTCGACAAACGCAAAAGCTACTGGTTCCTCCACCTCCACT 2681
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2881 TGGGGATGTTGCTCAGCTATGTCGACAAACGCAAAAGCTACTGGTTCCTCCACCTCCACT 2940
Query 2682 TCTAATCAGAGATGTGTTTTCAACTCTACGAAAGATAAGTGTGCAGTCAGGTACTGGAAG 2741
|||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2941 TCTAGTTAGAGATGTGTTTTCAACTCTACGAAAGATAAGTGTGCAGACAGGTACTGGAAG 3000
Query 2742 TACTAGGCAAAAGAAAAACCTTATCGTGAAGCTAATGCGCTCTTGTAGAGAGAAAGAGAT 2801
|||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 3001 TACTAGGCTAAAGAAAAATCTCATCGTGAAGCTAATGCGCTCTTGTAGAGAGAAAGAGAT 3060
Query 2802 CAAATTTCTTGTAAGAACATTGGCCCGTAATTTAAGGATTGGCGCTATGTTGAGAACTGT 2861
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3061 CAAATTTCTTGTTAGAACATTGGCCCGTAATTTAAGGATTGGCGCTATGTTGAGAACTGT 3120
Query 2862 TCTTCCTGCACTTGGGCGAGCAATCGTTATGAATTCTTTTTGGAGTTG-CCATAACAAAG 2920
||| ||||||||||||||||||||||||||||||||||| |||| || |||||| ||||
Sbjct 3121 TCTACCTGCACTTGGGCGAGCAATCGTTATGAATTCTTTCTGGA-ATGACCATAATAAAG 3179
Query 2921 AACTGTCAGAAAACTGTTTCAGGGAGAAACTTGAGGGAGTTTCTGCTGCAGTAGTTGAGG 2980
|||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3180 AACTATCAGAAAGCTGTTTCAGGGAGAAACTTGAGGGTGTTTCTGCTGCAGTAGTTGAGG 3239
Query 2981 CTTACAATATACTTCCTTCTCTGGACGTGGTTGTTCCTTCTCTCATGGACAAAGACATTG 3040
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3240 CTTACAACATTCTTCCATCTCTGGACGTGGTTGTTCCTTCTCTCATGGACAAAGACATTG 3299
Query 3041 AGTTTTCAACGTCAACTCTATCAATGGTTCCAGGGATACCTATAAAACCCATGCTTGCTA 3100
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 3300 AGTTTTCAACGTCAACTCTGTCAATGGTCCCAGGGATACCTATAAAACCCATGCTTGCAA 3359
Query 3101 AAATTGCTAAGGGCGTCCAAGAATTTGTTGAGCTCTTCCAAGACAAGGCGTTTACTTGTG 3160
||||||||||||| || ||||||||| || | |||| |||||| ||||| ||||||||||
Sbjct 3360 AAATTGCTAAGGGGGTTCAAGAATTTTTTAACCTCTCCCAAGAAAAGGCCTTTACTTGTG 3419
Query 3161 AATACAAATATGATGGTCAGCGCGCCCAGATCCATAAGTTACTTGATGGTACTGTGCGTA 3220
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3420 AATACAAATATGATGGCCAGCGCGCCCAGATCCATAAGTTACTTGATGGTACTGTGTGTA 3479
Query 3221 TCTTCTCTCGGAATGGGGACGAAACAACAG-CGAGATTTCCGGATCTTGTTGATGTCATA 3279
|||| ||||||||||||||||||||||| | | |||||||||||||| ||||||||||||
Sbjct 3480 TCTTTTCTCGGAATGGGGACGAAACAAC-GTCCAGATTTCCGGATCTGGTTGATGTCATA 3538
Query 3280 AAACAGTTTTCTTGCCCTATAGCTGAGACATTCATGTTGGACGCAGAGGTGGTTGCAACT 3339
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 3539 AAACAGTTTTCTTGCCCTGCCGCTGAGACATTCATGTTGGACGCAGAGGTGGTTGCCACT 3598
Query 3340 GATAGAAAAAATGGAAGCAAACTCATGTCATTCCAAGAGTTATCAACAAGAGAGAGAGGA 3399
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3599 GATAGAATAAATGGAAACAAACTCATGTCATTCCAAGAGTTATCAACAAGAGAGAGAGGG 3658
Query 3400 AGCAAAGATGCTTTGGTAACTACCGAAAGTATTAAGGTTGAAGTCTGCGTCTTTGTGTTT 3459
||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 3659 AGCAAAGATGCTTTGATAACTACAGAAAGTATTAAGGTTGAAGTCTGCGTCTTCGTGTTT 3718
Query 3460 GATATTATGTTCGGCAATGGAGAACAGCTGTTGGCTCTTCCTCTCCGTGAGAGAAGAAGA 3519
||||||||||| | ||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 3719 GATATTATGTTTGTCAATGGAGAACAGCTGTTGGCTCTTCCCCTCCGTGAGAGACGAAGA 3778
Query 3520 CGTCTAAAGGAGGTCTTCCCTGAGACTAGGCCAGGTTATCTTGAATATGCTAAGGAAATT 3579
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3779 CGTCTAAAGGAGGTCTTCCCTGAGACTAGGCCAGGTTATCTTGAGTATGCTAAGGAAATA 3838
Query 3580 ACAGTGGAAGCAGAAGAAGCTTCTTTGAATAATCAGGACACTTTGAGTAGAATAAATGCT 3639
|| |||| |||||||||||| ||| |||||||||| ||||| |||||||| |||||||||
Sbjct 3839 ACTGTGGGAGCAGAAGAAGCGTCTCTGAATAATCATGACACATTGAGTAGGATAAATGCT 3898
Query 3640 TTT-TTGGGAGAAGCATTTCAGTCATCTTGCGAAGGAATCATGGTTAAGTCTTTAGATGT 3698
||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 3899 TTTCTTGA-AGAAGCATTTCAGTCATCTTGTGAAGGAATCATGGTCAAGTCTTTAGATGT 3957
Query 3699 TGATGCAGGATACTTCCCCACAAAGCGTTATGATTCATGGCTCAAGGTTAAGCGAGATTA 3758
|||| ||||||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 3958 AAATGCTGGATACTGCCCCACAAAGCGCTCTGATTCATGGCTCAAGGTTAAGCGAGATTA 4017
Query 3759 TGTAGATGGATTGGGCGACACATTAGATTTAGTTCCTATAGGTGCTTGGCATGGCAACGG 3818
|||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||| ||
Sbjct 4018 TGTAGATGGATTGGGCGATACATTGGATTTAGTTCCTATTGGTGCTTGGTATGGCAATGG 4077
Query 3819 GAGAAAAGCGGGATGGTATAGTCCATTCCTTATGGCCTGCTTCAACCCTGAGACTGAGGA 3878
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 4078 GAGAAAAGCAGGATGGTATAGTCCATTCCTTATGGCCTGCTTCAACCCTGAGACTGAAGA 4137
Query 3879 ATTCCAGAGTGTCTGCCGTGTCATGTCTGGGTTTTCTGATGCCTTTTACATCGAGATGAA 3938
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 4138 ATTCCAGAGTGTCTGCCGTGTCATGTCTGGTTTTTCTGATGCCTTTTACATCGAGATGAA 4197
Query 3939 AGAACTCTACTCAGG-GGATAAGATCCTTACGAAAAAGCCGCCTTACTACAGAACAGGGG 3997
|||| ||||||| || ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 4198 AGAATTCTACTC-GGAGGATAAGATCCTTGCGAAAAAGCCGCCTTACTACAGAACAGGGG 4256
Query 3998 AAACACCTGACATGTGGTTTTCCGCAGAGGTTGTTTGGGAAATCAGAGGTGCAGATTTCA 4057
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 4257 AGACACCTGACATGTGGTTTTCCGCAGAGGTAGTTTGGGAAATCAGAGGTGCTGATTTCA 4316
Query 4058 CGGTCTCGCCTGTTCACAGTGCC-GCTTTAGGTCTCGTCCATCCATCCCGAGGTATCTCC 4116
| ||||||||||||||||||||| | ||||||||||||||||||||| ||||| |||||
Sbjct 4317 CAGTCTCGCCTGTTCACAGTGCCAG-TTTAGGTCTCGTCCATCCATCGCGAGGCATCTCT 4375
Query 4117 GTTAGGTTTCCGAGATTTATTC-GTAAAGTAACAGACAGAAATCCGGAGGAATGCAGCAC 4175
|||||||||||||||||||| | ||||||| ||||| |||||||| || ||||| || ||
Sbjct 4376 GTTAGGTTTCCGAGATTTAT-CAGTAAAGTGACAGATAGAAATCCTGAAGAATGTAGTAC 4434
Query 4176 AGCTGCAGATATCGCAGAGATGTTTCATGCTCAAACCAGAAAAATGAACATCACCTCTCA 4235
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 4435 GGCTACAGATATCGCAGAGATGTTTCATGCTCAAACCAGAAAAATGAACATCACTTCTCA 4494
Query 4236 ACAATAA 4242
||| |||
Sbjct 4495 ACATTAA 4501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 211453664745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5