BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338919
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66880.1 | Symbols: | Protein kinase superfamily protein | ... 743 0.0
> AT1G66880.1 | Symbols: | Protein kinase superfamily protein
| chr1:24946928-24955611 FORWARD LENGTH=4064
Length=4064
Score = 743 bits (402), Expect = 0.0
Identities = 542/607 (89%), Gaps = 19/607 (3%)
Strand=Plus/Plus
Query 110 AGTGTGGAAATATCACCGCTGGTTTCCCCTTCTGGGGAGGAAAGCGTCGAAAACAGTGCG 169
||||||| |||||||||||||||||||||||||||||||| || |||| |||||| ||||
Sbjct 74 AGTGTGGGAATATCACCGCTGGTTTCCCCTTCTGGGGAGGGAATCGTCTAAAACATTGCG 133
Query 170 GTGTTCCATCGCTGGAGCTTCACTGCAGCAAAAACATCACCTCTTTATTCATCTCAAGTC 229
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 GTCTTCCATCGCTGGAGCTTCACTGCAGCAAAAACATCACCTCTTTATTCATCTCAAGTC 193
Query 230 AAGAGTTCTATGTTTTACATCTAAATCAAACATC-AAACACACTTACACTTTCCAGAACC 288
||||||||||||||||||||||||||||||| || ||| ||||||| |||| | |||||
Sbjct 194 AAGAGTTCTATGTTTTACATCTAAATCAAACGTCTAAA-ACACTTAAACTTGCTAGAACA 252
Query 289 GACCTTTTAGGTTCCATTTGCGACTCTACGTTCACTACAACAACCTTGCCTCAAGAA-AT 347
|||||||||||||| |||||| ||||||| |||||||| | ||||||||||| | || ||
Sbjct 253 GACCTTTTAGGTTCAATTTGCAACTCTACTTTCACTACCATAACCTTGCCTCCA-AATAT 311
Query 348 TTTTGAGCTTTCGCCAACTTACAAGAGCCTCACCGTTTTTTACTACTGCTTCCC-TTACA 406
||| |||||||| |||||||||||||| ||||||||||| |||||||||||| || |
Sbjct 312 TTTCGAGCTTTCTCCAACTTACAAGAGGCTCACCGTTTTCTACTACTGCTTCTTATTG-A 370
Query 407 CTCATTACCTTTCGGAGT-ATATATGTCCTATGAGAGGTTCTATATTTATGTCTCAAAAC 465
|||||||| ||||| ||| ||| ||||||||||||||||| ||| ||| ||||| |||||
Sbjct 371 CTCATTACGTTTCG-AGTTATAAATGTCCTATGAGAGGTTTTATCTTTGTGTCTGAAAAC 429
Query 466 CCTGATCAGTATCATACCATCTGCGGTGACACTTTCACCGTGTAT-GTTCCTATGA-GTT 523
| ||| | ||||||| |||||||||||||||||||||||| || ||||||| | |||
Sbjct 430 CATGA--A-TATCATAAAATCTGCGGTGACACTTTCACCGTG-ATTGTTCCTAC-ACGTT 484
Query 524 TTGTTGCA--AGA-AAAGAGTTCAATATGACCAATTTGGAAAGTGTTTTAAGTAAAGGTT 580
||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 485 TTGGTGCAGGAGAGAAAGAGTTGAATATGACCAATTTGGAAAGTGTTTTAAGTAAAGGAT 544
Query 581 TTGAAGTAAAAGTGAAGATCGATGATATATCATGTCAAGAATGTTTATCCTCTCATGGAA 640
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 545 TTGAAGTAAAAGTGAAGATCGATGATACATCATGTCAAGAATGTTTATCCTCTCATGGAA 604
Query 641 GTTGTGGCTTCAACGAAACCTTGCCATTAGGAGCTAAATGCAGTCCATTCAATCCACCAC 700
|||||||||| || |||||||||||| | |||| ||||||||||||| |||||||| ||
Sbjct 605 GTTGTGGCTTTAATGAAACCTTGCCAGTGGGAGGTAAATGCAGTCCACTCAATCCAACAA 664
Query 701 CACCAAC 707
||| |||
Sbjct 665 CAC-AAC 670
Score = 470 bits (254), Expect = 2e-131
Identities = 481/585 (82%), Gaps = 37/585 (6%)
Strand=Plus/Plus
Query 772 GGGAATCGTCACAAACATTGCGGTCATCCATTGCTAGAGCTTCGCTGCAACCAATACAAC 831
||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 685 GGGGATCGTCACAAACATTGCGGTCATCCATTGCTAGAGCTTCGCTGCGACCAAAACAAG 744
Query 832 AGTACCTCTTTATTCATCTCAGACCAAGAGTACTATGTTCTTAATGTAGATCAAACATCT 891
||||||||||||||||||||||||||||||| || |||||| |||| ||||||||||||
Sbjct 745 AGTACCTCTTTATTCATCTCAGACCAAGAGTTCTTTGTTCTCCATGTCGATCAAACATCT 804
Query 892 TACAATCTTACACTTGCCAGA---GACCTTTTAGATTTCTTTTGCTCCTTTACATTCACC 948
|||| ||||||||| |||||| ||||||||| ||| |||||||||| |||||||||||
Sbjct 805 TACAGTCTTACACTCGCCAGACCAGACCTTTTACATTCCTTTTGCTCCCTTACATTCACC 864
Query 949 AACACAACCTTACCATCAGAAATTTTCGAGA-TTTCGTCAA-CCTACAAGAGCGTCACAT 1006
||||||||||||||| ||||||||||||| | |||| || ||||||||||||||||||
Sbjct 865 AACACAACCTTACCACCAGAAATTTTCGA-ACTTTC-TCCGGCCTACAAGAGCGTCACAT 922
Query 1007 TCTACCACCATTGCGAACCT-TATCTTCCTTACCTTTCTAAATATACATGTCCTGGGATA 1065
|||||||| || | || | ||||||| ||||||| || ||||||||||||| |||
Sbjct 923 TCTACCACTGTTAC---CCGGT-TCTTCCTGACCTTTCGAATTATACATGTCCTGTTATA 978
Query 1066 GGACCTCCGATCACAGTTTCGGGAAACCCTGAATATCAT-AAGTTCTGCCTTGCCAGTTT 1124
|| ||| ||| |||| || |||||||||||| |||| || |||| || ||| |||
Sbjct 979 GG---TCCAATCTCAGTGTCTGGAAACCCTGAAGATCACGAAAC-CTGCTTTCCCAATTT 1034
Query 1125 CACCACGAACGTTCCAAAGAGCTTT-GTTCTA-GAA-GAGAAAGAGTTGAATATGAGC-A 1180
|| | |||||||| | ||| ||| || | | ||| |||||| | |||||||| ||| |
Sbjct 1035 TGCCGCAAACGTTCCCACGAG-TTTCGT-C-ACGAAAGAGAAAAAATTGAATAT-AGCCA 1090
Query 1181 ATTTGGAAAGAGTTTTAAGAAAAGGA-TTTGAGGTGAAGGTGAA-GATCGATGA-GAAAG 1237
|||||||||| ||||| ||||||| ||||||||||| |||| | || || | |||||
Sbjct 1091 ATTTGGAAAGTGTTTTG-GAAAAGGGCTTTGAGGTGAACATGAATG-TC-ATCATGAAAG 1147
Query 1238 CATGTCAAGAATGTTTGTCCTCTCATGAA-CACTGTGGCTTC-ACCGAAACCTTTCCATT 1295
| ||||||| ||||| | |||| ||||| | |||||||||| | |||| |||||||||
Sbjct 1148 CTTGTCAAGCATGTTCATACTCTAATGAATC-CTGTGGCTTCGAT-GAAAACTTTCCATT 1205
Query 1296 TGAAGTTAAATGCATTCCACCCCAT-CGACAAAATGGTAAGTTTC 1339
||||| ||||||| |||| |||| | || || || ||||||||
Sbjct 1206 CGAAGTCAAATGCAAACCACACCATTC-ACCAACTGCTAAGTTTC 1249
Score = 335 bits (181), Expect = 7e-91
Identities = 469/602 (78%), Gaps = 43/602 (7%)
Strand=Plus/Plus
Query 734 AGTGTGGGAACATCACCGCGGGTTTCCCCTTCTGGGGAGGGAATCGTC-ACAAACATTGC 792
|||||||||| |||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 74 AGTGTGGGAATATCACCGCTGGTTTCCCCTTCTGGGGAGGGAATCGTCTA-AAACATTGC 132
Query 793 GGTCATCCATTGCTAGAGCTTCGCTGCAACCAATACAACAGT-ACCTCTTTATTCATCTC 851
|||| ||||| ||| ||||||| ||||| | || | |||| | |||||||||||||||||
Sbjct 133 GGTCTTCCATCGCTGGAGCTTCACTGCAGC-AA-A-AACA-TCACCTCTTTATTCATCTC 188
Query 852 A-GACCAAGAGTACTATGTTCTTA-ATGTAGATCAAACATCTTACA-ATCTTACACTTGC 908
| | | |||||| ||||||| ||| || || ||||||| ||| | | | |||| ||||||
Sbjct 189 AAGTC-AAGAGTTCTATGTT-TTACATCTAAATCAAACGTCTAAAACA-CTTAAACTTGC 245
Query 909 CAGA---GACCTTTTAGATTTCT-TTTGCTCCTTTACATTCACCAACACAACCTTACCAT 964
||| |||||||||| || | ||||| || ||| ||||| | || |||||| || |
Sbjct 246 TAGAACAGACCTTTTAGGTT-CAATTTGCAACTCTACTTTCACTACCATAACCTTGCC-T 303
Query 965 C-AGAA-ATTTTCGAGATTTCGTC-AACCTACAAGAG-CGTCACA-TTCTACCACCATTG 1019
| | || ||||||||| |||| || ||| |||||||| | |||| || | | || | ||
Sbjct 304 CCA-AATATTTTCGAGCTTTC-TCCAACTTACAAGAGGC-TCACCGTTTT-CTACTACTG 359
Query 1020 CGAACCTTATCTT-C-C-TTACCTTTCTAAATATACATGTCCTGGGATAGGACCTCCGAT 1076
| | |||| | | | |||| |||| | |||| ||||||| || ||| | ||
Sbjct 360 CTT-C-TTAT-TGACTCATTACGTTTCGAGTTATAAATGTCCTATGAGAGGTTTT---AT 413
Query 1077 CACAGTTTCGGGAAACCCTGAATATCATAAGTTCTGCCTTGCCAGTTTCACCACGAACGT 1136
| || || | ||||| |||||||||||| ||||| || || ||||||| || ||
Sbjct 414 CTTTGTGTCTGAAAACCATGAATATCATAAAATCTGCGGTGACACTTTCACCGTGATTGT 473
Query 1137 TCCAA-AGAGCTTTGTT-CTAGAAGAGAAAGAGTTGAATATGAGCAATTTGGAAAGAGTT 1194
||| | | | |||| | | || |||||||||||||||||||| |||||||||||| |||
Sbjct 474 TCCTACAC-GTTTTGGTGC-AGGAGAGAAAGAGTTGAATATGACCAATTTGGAAAGTGTT 531
Query 1195 TTAAGAAAAGGATTTGAGGTGAAGGTGAAGATCGATGAGAAAGCATGTCAAGAATGTTTG 1254
||||| ||||||||||| || || |||||||||||||| | | ||||||||||||||||
Sbjct 532 TTAAGTAAAGGATTTGAAGTAAAAGTGAAGATCGATGATACATCATGTCAAGAATGTTTA 591
Query 1255 TCCTCTCATGAACACT-GTGGCTTCACCGAAACCTTTCCATTTGAAGTTAAATGCATTCC 1313
|||||||||| | | | ||||||| | |||||||| ||| | | || |||||||| |||
Sbjct 592 TCCTCTCATGGA-AGTTGTGGCTTTAATGAAACCTTGCCAGTGGGAGGTAAATGCAGTCC 650
Query 1314 AC 1315
||
Sbjct 651 AC 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67067928120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5