BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338947
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67130.1 | Symbols: | F-box family protein | chr1:25099262-... 337 2e-91
AT5G42430.1 | Symbols: | F-box and associated interaction doma... 305 4e-82
AT1G30925.1 | Symbols: | phospholipase Cs | chr1:11009888-1101... 265 7e-70
AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-... 252 6e-66
AT1G30935.1 | Symbols: | pseudogene, F-box protein family, con... 213 3e-54
AT3G57580.1 | Symbols: | F-box and associated interaction doma... 139 5e-32
> AT1G67130.1 | Symbols: | F-box family protein | chr1:25099262-25100625
REVERSE LENGTH=1176
Length=1176
Score = 337 bits (182), Expect = 2e-91
Identities = 350/425 (82%), Gaps = 36/425 (8%)
Strand=Plus/Plus
Query 490 GATCTTGAGAAAAATGAATGGTCGGAA-TATGCCTACACTTTGAAGGCTGATAATAGCGT 548
||||| |||||| | |||||||| ||| |||||||||||||||||| ||||||||| ||
Sbjct 628 GATCTCGAGAAAGAGGAATGGTC-GAAGTATGCCTACACTTTGAAGCCTGATAATAATGT 686
Query 549 CGTTAAGGTTAACTACAATCTTT-CTGTTGTTGGGGTGACTGCTAGAGGTGAAATTGTTT 607
||||||||||| || ||||||| || |||||||||| ||| ||||||||||||||||||
Sbjct 687 TGTTAAGGTTAATTATAATCTTTCCT-TTGTTGGGGTTACTACTAGAGGTGAAATTGTTT 745
Query 608 TGGCCAAGCA-GTATGCATGTAAACCGTTTTATGTTTTCTACTTTAATCCCGAAAGGAAC 666
|||| ||| | |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 746 TGGCGAAG-ATGTATGCATGTAAACCGTTTTATGTTTTCTACTATAATCCCGAAAATAAC 804
Query 667 ACTCTCCTAAGTGTTGAAATCCAAGGTGTTGGAGAAGAC-C--A-T-----AG-A----- 711
|||||| ||||||||||||| |||||||||||||||||| | | | || |
Sbjct 805 ACTCTCTTAAGTGTTGAAATTCAAGGTGTTGGAGAAGACTCTGAATGGTTTAGCAATTAT 864
Query 712 --G----TCTGCGTCTTTGTTGACCATGTGGAGGATCTTCATCAGTTTGATAATATGAAG 765
| ||| ||||||||| || |||||| |||||||||||||||||||||||| ||||
Sbjct 865 CAGAGAGTCTACGTCTTTGTAGAACATGTGAAGGATCTTCATCAGTTTGATAATACGAAG 924
Query 766 ACATCTATAAGCCTACCACAACAGAAGCTTAAACCCACAAGCACATCAACATCAACATCA 825
|||||||||| ||||||| ||||||||| |||||||||||||| ||||| | | |||
Sbjct 925 ACATCTATAAACCTACCAGAACAGAAGCGTAAACCCACAAGCATATCAA--T-A---TCA 978
Query 826 TCTAAAAACAATCATCAAGTGATGACGTC---GATATTATCTAGAAAATATCATCAAGCG 882
|||||| | || |||| || | |||| | ||||| |||||||||| |||| |||| |
Sbjct 979 TCTAAATATGATGATCATGTTAGGACGACACTGATATCATCTAGAAAAAATCAGCAAGTG 1038
Query 883 AGGAC 887
| |||
Sbjct 1039 ACGAC 1043
Score = 291 bits (157), Expect = 1e-77
Identities = 228/260 (88%), Gaps = 14/260 (5%)
Strand=Plus/Plus
Query 112 GGGTTTGATCCGATAT-GCAAGCAATTCAAGGTTTTGG-TCTTAAACAATCCT-GACATT 168
|||||||| ||||| | ||||||||||||||||||||| |||| ||| || || |||| |
Sbjct 376 GGGTTTGACCCGAT-TGGCAAGCAATTCAAGGTTTTGGTTCTT-AAC-ATTCTAGACAAT 432
Query 169 CAGCATATTCTGACATTAGGAACTA-AAAATG-TGAGGTGGAGGAGTATGCAACGTTCCT 226
|| ||||||||||||||||||| | |||||| | | |||||||||||| ||| ||||||
Sbjct 433 CATTATATTCTGACATTAGGAAC-AGAAAATGAT-AAGTGGAGGAGTATCCAAAGTTCCT 490
Query 227 TAAGGTAT-GTTCCTCGTGAGCAAAGGCCGATATGCATTAATGGGGTTTTGTATTACATA 285
|||||||| | |||| ||| |||||| ||||||||||||||||| |||||||||||||||
Sbjct 491 TAAGGTATCG-TCCTTGTGGGCAAAGCCCGATATGCATTAATGGAGTTTTGTATTACATA 549
Query 286 GCTTACGACT-TGCAGGACAGCTCGTATGATGTGATAGGTTGCTTTCATGTTAGGTTTGA 344
|||||||| | |||||||||||| |||||||||||||||| ||| |||||||||||||
Sbjct 550 GCTTACGA-TACACAGGACAGCTCGAATGATGTGATAGGTTGTTTTGATGTTAGGTTTGA 608
Query 345 GAAATTCAAGTTTTTACATG 364
||||||||||||||| ||||
Sbjct 609 GAAATTCAAGTTTTTCCATG 628
Score = 167 bits (90), Expect = 2e-40
Identities = 109/118 (92%), Gaps = 1/118 (1%)
Strand=Plus/Plus
Query 894 ATCATCTAGAAAAAATCATCAACTGAGGACTGTTTCTCACCCGCAACAAGATCGGTGTAC 953
|||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||| ||||
Sbjct 1014 ATCATCTAGAAAAAATCAGCAAGTGACGACTGTTTCTCGCCCGCAACAAGATCGGCGTAC 1073
Query 954 AAGTAACAAATTTAGTGCTCTGTGTCTTTTAGATGATGATGAATTTTCAGGTGTCTAA 1011
|| ||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 1074 AACTAACAAATTTAGTGCTCTGTGTCTTTTAG-TGATGAAGAATTCTCAGGTGTCTAA 1130
> AT5G42430.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:16971312-16972499 REVERSE LENGTH=1188
Length=1188
Score = 305 bits (165), Expect = 4e-82
Identities = 366/462 (79%), Gaps = 18/462 (4%)
Strand=Plus/Plus
Query 255 GATATGCATTAATGGGGTTTTGTATTACATAGCTTACGAC-TTGCAGGACAGCTCGTATG 313
||||||||| ||||||| |||||||||||||||||| || ||| | | | || | ||
Sbjct 606 GATATGCATCAATGGGGCTTTGTATTACATAGCTTATAACATTG-ATG--ATTTC-T-TG 660
Query 314 ATGT-GATAGGTTGCTTTCATGTTAGGTTTGAGAAATTCAAGTTTTTACATGTAAATTAT 372
|| |||| ||||||| |||| |||| ||||||||||| | | || || |||| |
Sbjct 661 GGGTATATAGTTTGCTTTGATGTCAGGTCCGAGAAATTCAAATGTCTAAATCTAAACCAA 720
Query 373 GATATGATAGACT---C-TTTTTGTGTATTAG-TAAACTATAAGGGCAAATTAGGTG-GG 426
|| || | || | | | | ||| | || ||||||| || |||||||||| ||
Sbjct 721 GA-CTGTTTTTCTGAACGATCTACTAAATT-GATATACTATAAAGGTAAATTAGGTGTGG 778
Query 427 ATTTATTGGGAGTATGCTGATGATGGTGGATTTCCTCTTGAGTTATCTATGTGGGTTCTA 486
|| ||| | |||||||| ||| ||||||||||| ||| |||||| |||||||||||||
Sbjct 779 -TTAATTTGAAGTATGCTCATGGCGGTGGATTTCCCCTTAAGTTATGTATGTGGGTTCTA 837
Query 487 GAGGATCTTGAGAAAAATGAATGGTCGGA-ATATGCCTACACTTTGAAGGCTGATAATAG 545
|||||| | |||||| | |||||| | | || || |||||||||| || ||| ||||
Sbjct 838 GAGGATGTGGAGAAACAGGAATGGAC-AACATCTGTGTACACTTTGAGGGATGAGGATAG 896
Query 546 CGTCGTTAAGGTTAACTACAATCTTTCTGTTGTTGGGGTGACTGCTAGAGGTGAAATTGT 605
|||||||||||| ||||| |||||| | |||||||| | ||||||| ||||||||||||
Sbjct 897 AGTCGTTAAGGTTTACTACGATCTTTTTATTGTTGGGATAACTGCTACAGGTGAAATTGT 956
Query 606 TTTGGCCAAGCAGTATGCATGTAAACCGTTTTATGTTTTCTACTTTAATCCCGAAAGGAA 665
|||||| ||| | | | |||||| ||||||||||| ||||||||||||| |||||||||
Sbjct 957 TTTGGCGAAGAAAAAGGTATGTAAGCCGTTTTATGTCTTCTACTTTAATCTCGAAAGGAA 1016
Query 666 CACTCTCCTAAGTGTTGAAATCCAAGGTGTTGGAGAAGACCA 707
|||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1017 CACTCTCCTAAGTGTTGAAATCCAAGGTTTTGGAGAATACCA 1058
> AT1G30925.1 | Symbols: | phospholipase Cs | chr1:11009888-11011792
REVERSE LENGTH=1125
Length=1125
Score = 265 bits (143), Expect = 7e-70
Identities = 259/312 (83%), Gaps = 19/312 (6%)
Strand=Plus/Plus
Query 401 TAAACTATAAGGGCAAATTAGGTGGGATTTATTGGGA-GTATG-CTGATGATGGTGGATT 458
||||||||||||| ||| |||||| |||| ||| || | ||| || |||| ||| |||
Sbjct 752 TAAACTATAAGGGTAAAGTAGGTGTGATTAATT-TGACGCATGCCT-ATGAACGTGTATT 809
Query 459 TCCTCTTGAGTTATC-TATGTGGGTTCTAGAGGATCTTGAGAAAAATGAATGGTCGGA-A 516
||| ||| ||||| | |||| ||||||||||||| |||||||| | |||||||| || |
Sbjct 810 TCCCCTTCAGTTA-CGTATGACGGTTCTAGAGGATTTTGAGAAACAGGAATGGTC-GACA 867
Query 517 TATGCCTACACTTTGAAGGCTGATAATAGCGTCGTTAAGGTTAACTACAATCTTTCTGTT 576
|||| ||||||||||| |||||| |||| |||||||| | | || |||| ||
Sbjct 868 TATGTCTACACTTTGATGGCTGAGAATATAGTCGTTAA-G-----T---ATGTTTCCGTG 918
Query 577 GTTGGGGTGACTGCTAGAGGTGAAATTGTTTTGG-CCAAGCAGTATGCATGTAAACCGTT 635
|||||| ||||||||| |||||| |||||||||| || || ||||||| ||||||||
Sbjct 919 GTTGGGATGACTGCTACAGGTGATATTGTTTTGGTGAAAACA-AATGCATGCAAACCGTT 977
Query 636 TTATGTTTTCTACTTTAATCCCGAAAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTGT 695
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 978 TTATGTGTTCTACTTTAATCCCGGAAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTGT 1037
Query 696 TGGAGAAGACCA 707
||||||||||||
Sbjct 1038 TGGAGAAGACCA 1049
> AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-11005444
REVERSE LENGTH=1203
Length=1203
Score = 252 bits (136), Expect = 6e-66
Identities = 544/730 (75%), Gaps = 71/730 (10%)
Strand=Plus/Plus
Query 12 AAAGGAGGGTAACGATCAAGTGGGTGTGATATGTAACCCTAGCACAGGACA--AT----A 65
|||| ||||| ||||||| |||||||||||||||||||||||||||| || || |
Sbjct 366 AAAGAAGGGTGACGATCACTTGGGTGTGATATGTAACCCTAGCACAGGGCAGTATGGGTA 425
Query 66 TGCGATCCTACCACCTGAACCG--TC-CA-GAAGC-TGCCGT--GGCA--TTTT-AGGGT 115
|| |||| |||||||| || | | || || || |||| | || | |||| |||||
Sbjct 426 TGTGATCTTACCACCTTTACTGGATTTCAAGA-GCGTGCCTTACGGTAAATTTTTAGGGT 484
Query 116 TTGATCCGATATG-CAAGCAATTCAAGGT-TT--TG--G-TCTTA-A-----ACAATCCT 162
|||||||||| || ||||||||||||||| || | | | || | | || | |
Sbjct 485 TTGATCCGAT-TGACAAGCAATTCAAGGTATTAATCCCGATATTCGATTTTGATAAACAT 543
Query 163 GA--C--ATTCAGCATATTCTGACATTAGGAACTAAAA-ATGT-GAGGTGGAGGA-GTAT 215
| | || || |||||||| ||||||||| || ||| | || | ||||||||| | ||
Sbjct 544 CAAACGGAT-CATCATATTCTTACATTAGGAGCTGAAACA-GTTG-GGTGGAGGAAG-AT 599
Query 216 GCAA-CGTTCCTTAAGGTATGTTCCTCGTGAGCAAAGGC-CGATATGCATTAATGGGGTT 273
||| | | ||||| | ||| |||||| | || || || | || ||||| |||||| ||
Sbjct 600 CCAATC-TCCCTTACGCTATCTTCCTCAT-AGTAATGGAACAATTTGCATCAATGGGATT 657
Query 274 TTGTATTACATAGCTTACG--ACTTGCAGGACAGCTCG-TATGA-TGTGATAGGTTGCTT 329
||||||||| ||||| | | || | | || | | || | |||| ||| ||||||
Sbjct 658 TTGTATTACCTAGCTAAAATTAATT--ATG-CAA-TGGATAAAAATGTGCTAGTTTGCTT 713
Query 330 TCATGTTAGGTTTGAGAAATTCAAGTTTTTACATGTAAATTATGATATGATAGACTCTTT 389
| ||||||||| |||||| || |||| ||| | | || | ||| | | |||||
Sbjct 714 TGATGTTAGGTCTGAGAATTTTGTGTTTCTACGTCTTAAC-AC-ATAC--T-G-CTCTTC 767
Query 390 TTGTGTATTAGTAAACTATAAGGGCAAATTAGGTGGGATTTATTGGGAGTATGCTGATGA 449
| | ||| |||||||||||||| |||||||| |||| || ||||||| ||||||
Sbjct 768 TACTAAATTGGTAAACTATAAGGGTAAATTAGGCATGATTAATCAAGAGTATGTTGATGA 827
Query 450 TGGTGGATTTCCTCTTGAGTTATCTATGTGGGTTCTAGAGGATCTTGAGAAAA-ATGAAT 508
|||||| ||||| || ||||| | ||||||||||||||||| | | ||||| | ||||
Sbjct 828 TGGTGGTTTTCCCCTAAAGTTAAGTGTGTGGGTTCTAGAGGATGTCG-GAAAAGAAGAAT 886
Query 509 GGTCGGA-ATATGCCTACACTTTGAAGGCTGATAATAGCGTCGTTAAGGTTAACTACAAT 567
||||| | ||||| ||||||||||| || |||||||| |||| | ||||||| || |||
Sbjct 887 GGTCG-ACATATGTCTACACTTTGAGGGATGATAATAAAGTCGATCAGGTTAAATATAAT 945
Query 568 CTTTCTGTTGTTGGGGTGACTGCTAGAGGTGAAATTGTTTTGGCCAAGCAG--T-ATGCA 624
|| || |||||||||||||||||| ||||||||||||||||| ||| || | | ||
Sbjct 946 CTCTCCGTTGTTGGGGTGACTGCTTCAGGTGAAATTGTTTTGGTGAAGAAGACTCAAACA 1005
Query 625 -TGTAAACCGTTTTATGTTTTCTACTTTAATCCCGA-AAGGAACACTCTCCTAAGTGTTG 682
| ||| || ||||||||||| |||||||| ||||| || || |||||| ||| |||||
Sbjct 1006 CT-TAAGCCATTTTATGTTTTATACTTTAACCCCGACAAA-AATACTCTCTTAACTGTTG 1063
Query 683 AAATCCAAGG 692
|| || ||||
Sbjct 1064 AAGTCAAAGG 1073
> AT1G30935.1 | Symbols: | pseudogene, F-box protein family, contains
F-box domain Pfam:PF00646 | chr1:11017436-11018990 REVERSE
LENGTH=1555
Length=1555
Score = 213 bits (115), Expect = 3e-54
Identities = 251/314 (80%), Gaps = 19/314 (6%)
Strand=Plus/Plus
Query 401 TAAACTATAAGGGCAAATTAGGTGGGATTTATTGGGAGTATGCT-G--ATGATGGTGGAT 457
||||||||||||| |||||| |||||||| ||| |||||||||| | ||| ||||||||
Sbjct 749 TAAACTATAAGGGGAAATTATGTGGGATTAATTTGGAGTATGCTAGGCATGTTGGTGGAT 808
Query 458 TTCCTCTTGAGTT-ATCTATGTGGGTTCTAGAGGATCTTGAGAAAAATGAATGGTCGGAA 516
||||| || |||| | |||||||||| |||||||| | |||||| ||||||||| ||
Sbjct 809 TTCCTGTTAAGTTGAG-TATGTGGGTTTTAGAGGATGTCGAGAAACCGGAATGGTCGAAA 867
Query 517 TATGCCTACACTTTGAAGG-CTGATAAT-AGCGTCGTTAAGGTTAACTACAATCTTTCTG 574
||| |||| ||||| || | || | | | ||||||||||||||| ||||||||||
Sbjct 868 CATGTCTACTCTTTGT-GGACGGAGAGTGAA-GTCGTTAAGGTTAACCGGAATCTTTCTG 925
Query 575 TTGT-TGGGGTGACTGCTAGAGGTGAAATTGTTTTGGCCAAGCA-GTATGCATGTAAACC 632
|| | |||| ||||||| | ||||| |||||||| | | | | | ||||| ||| ||
Sbjct 926 TT-TCTGGGATGACTGCAACCGGTGACATTGTTTTATCGATGGAAG-ATGCAACTAATCC 983
Query 633 GTTTTATGTTTTCTACTTTAATCCCGAAAGGAACACTCTCC---T--AA-GTGTTGAAAT 686
||||||||||||| |||| ||||| || ||||||||||||| | || ||||||||||
Sbjct 984 GTTTTATGTTTTCAACTTCAATCCGGATAGGAACACTCTCCAAGTCCAAAGTGTTGAAAT 1043
Query 687 CCAAGGTGTTGGAG 700
||||||| ||||||
Sbjct 1044 CCAAGGTCTTGGAG 1057
> AT3G57580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:21320491-21322379 REVERSE LENGTH=1889
Length=1889
Score = 139 bits (75), Expect = 5e-32
Identities = 243/321 (76%), Gaps = 24/321 (7%)
Strand=Plus/Plus
Query 390 TTGTGTATTAGTAAACTATAAGGGCAAATTAGGTGGGATTTATTGGGAGTATGCTGATGA 449
||| || || || ||||||| ||| |||||||||| || | |||| | | || ||| |
Sbjct 1101 TTGAGT-TTGGTCAACTATATGGGTAAATTAGGTGTGACTGATTGCAACTGTGTTGACGC 1159
Query 450 TGGTGGATTTCCT-C--TTGAGTTATCTATGTGGGTTCTAGAGGATCTTGAGAAAAATG- 505
||||||| | | | ||||||| | | ||||||||||||||||| |||||||| ||
Sbjct 1160 TGGTGGAAGACGTACCGTTGAGTTGTGTCTGTGGGTTCTAGAGGATGTTGAGAAAC-TGG 1218
Query 506 AATGG-TCGGAA-TATGCCTACACTTTGAAGGCTGATAAT-AGCGTCGTTAAGGTTAACT 562
||||| | | || |||| ||||||| || |||| ||| | ||| || | || ||
Sbjct 1219 AATGGGT-G-AAGTATGTCTACACTCTGC---CTGAGAATGAA-GTCCTT--GCTTC-CT 1269
Query 563 AC-AATCTTTCTGTTGTTGGGGTGACTGCTAGAGGTGAAATTGTTTTG-GCCAAGCAGTA 620
| ||| |||| |||| ||| |||||||||| || || ||||| ||| | | | ||||
Sbjct 1270 GCGAAT-TTTCAGTTGCTGGAGTGACTGCTACTGGGGATATTGTCTTGTGT-ATGAAGTA 1327
Query 621 TGCATGTAAACCGTTTTATGTTTTCTACTTTAATCCCGAAAGGAACACTCTCCTAAGTGT 680
| |||||||||||| ||||| |||||||| |||||||||| ||| ||||| | || |||
Sbjct 1328 TACATGTAAACCGTACTATGTGTTCTACTTCAATCCCGAAAAGAAAACTCTGCAAACTGT 1387
Query 681 TGAAATCCAAGG-TGTTGGAG 700
|||||||||||| | ||||||
Sbjct 1388 TGAAATCCAAGGCT-TTGGAG 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5