BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338955
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08530.1 | Symbols: | Clathrin, heavy chain | chr3:2586806-... 379 2e-104
AT3G11130.1 | Symbols: | Clathrin, heavy chain | chr3:3482149-... 379 2e-104
AT1G67200.1 | Symbols: | pseudogene, similar to NL25, similar ... 364 7e-100
> AT3G08530.1 | Symbols: | Clathrin, heavy chain | chr3:2586806-2595572
REVERSE LENGTH=5638
Length=5638
Score = 379 bits (205), Expect = 2e-104
Identities = 310/361 (86%), Gaps = 6/361 (2%)
Strand=Plus/Plus
Query 74 AGGAGTTATTTGCTCAAACCAAGTACAAGGAGGCTGCTGAGCTTGCTGCTGACTCTCCTC 133
||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1306 AGGAGTTGTTCGCTCAAACAAAGTACAAGGAGGCTGCTGAGCTTGCTGCTGAATCTCCTC 1365
Query 134 GAGGCATTCTCCGGACACCTGATACAATTGCCAAATTTCGGAATGTTCATGTACAAGCTG 193
||| ||||| |||||||||||||| | |||||||| | || ||||| |||||||||||
Sbjct 1366 AAGGAATTCTAAGGACACCTGATACAGTGGCCAAATTCCAGAGTGTTCCTGTACAAGCTG 1425
Query 194 GACAAAATCATCCATTGTTACAATATTTTGCGACTCTATTGACAAAAGG-AAAGCTCAAT 252
|||||| || |||||||||||| ||||||| |||||| ||||| | ||| ||| ||||||
Sbjct 1426 GACAAACTCCTCCATTGTTACAGTATTTTGGGACTCTTTTGACTAGAGGGAAA-CTCAAT 1484
Query 253 GCATTTGAATCATTGGAACTATCTTCG-CTTGTTGTGAATCAAGGCAAGAAGAACCTCTT 311
||| ||| ||| ||||||||||| || || |||||||| ||| ||||||||||||| |
Sbjct 1485 TCATATGAGTCACTGGAACTATCT-CGGCTGGTTGTGAACCAAAACAAGAAGAACCTCCT 1543
Query 312 GGAAAACTGGTTGGCGGATGACAAGTTGGAATGTACCGAAGAACTTGGAGACCTTGTTAA 371
||||||||||||||| || || || | ||||| | |||||||||||||||||||| ||
Sbjct 1544 GGAAAACTGGTTGGCAGAGGATAAACTAGAATGCAGTGAAGAACTTGGAGACCTTGTGAA 1603
Query 372 GACTGTGGATAATGATCTTGCTCTTAAAATATACA-CTAAAGCTCGGACCACCCCAAAAG 430
|||||||||||||||||| ||||| |||||||||| | ||||||||| | || |||||||
Sbjct 1604 GACTGTGGATAATGATCTCGCTCTGAAAATATACATC-AAAGCTCGGGCGACTCCAAAAG 1662
Query 431 T 431
|
Sbjct 1663 T 1663
> AT3G11130.1 | Symbols: | Clathrin, heavy chain | chr3:3482149-3491908
REVERSE LENGTH=5785
Length=5785
Score = 379 bits (205), Expect = 2e-104
Identities = 313/365 (86%), Gaps = 8/365 (2%)
Strand=Plus/Plus
Query 76 GAGTTATTTGCTCAAACCAAGTACAAGGAGGCTGCTGAGCTTGCTGCTGACTCTCCTCGA 135
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1388 GAGTTATTTGCTCAAACAAAGTACAAGGAGGCTGCTGAGCTTGCTGCTGAATCTCCTC-A 1446
Query 136 GG-CATTCTCCGGACACCTGATACAATTGCCAAATTTCGGAATGTTCATGTACAAGCTGG 194
|| |||||| |||||||||||||| | |||||||| | || ||||| ||||||||| ||
Sbjct 1447 GGGCATTCTACGGACACCTGATACGGTGGCCAAATTCCAGAGTGTTCCTGTACAAGCAGG 1506
Query 195 ACAAAATCATCCATTGTTACAATATTTTGCGACTCTATTGACAAAAGGAAAGCTCAATGC 254
|||| || |||||||||||| ||||||| ||| || ||||| | ||| ||||||||| |
Sbjct 1507 GCAAACTCCTCCATTGTTACAGTATTTTGGGACCCTTTTGACTAGAGGGAAGCTCAATTC 1566
Query 255 ATTTGAATCATTGGAACTATCTTCG-CTTGTTGTGAATCAAGGCAAGAAGAACCTCTTGG 313
|| ||| || |||||||||||| || ||||||||||||||| ||| |||||||||||||
Sbjct 1567 ATATGAGTCTTTGGAACTATCT-CGGCTTGTTGTGAATCAAAACAAAAAGAACCTCTTGG 1625
Query 314 AAAACTGGTTGGCGGATGACAAGTTGGAATGTACCGAAGAACTTGGAGACCTTGTTAAGA 373
||||||||||||| || || ||||| ||||| | |||||||| ||||||||||| || |
Sbjct 1626 AAAACTGGTTGGCAGAGGATAAGTTAGAATGCAGTGAAGAACTCGGAGACCTTGTCAAAA 1685
Query 374 CTGTGGATAATGATCTTGCTCTTAAAATATACA-CTAAAGCTCGGACC-ACCCCAAAAGT 431
||||||||||||| |||||||| |||||||||| | |||||| | | | || ||||||||
Sbjct 1686 CTGTGGATAATGACCTTGCTCTAAAAATATACATC-AAAGCTAG-AGCTACTCCAAAAGT 1743
Query 432 CATTG 436
| |||
Sbjct 1744 CGTTG 1748
> AT1G67200.1 | Symbols: | pseudogene, similar to NL25, similar
to disease resistance protein RPS4 GI:5459305 from (Arabidopsis
thaliana); blastp match of 40% identity and 3.9e-13 P-value
to GP|3947733|emb|CAA08797.1||AJ009719 NL25 {Solanum tuberosum}
| chr1:25140265-25140551 FORWARD LENGTH=287
Length=287
Score = 364 bits (197), Expect = 7e-100
Identities = 237/256 (93%), Gaps = 4/256 (2%)
Strand=Plus/Plus
Query 461 AGGATGCTCCGCCGCAACATCAAGTTTTTATTAATTTTCGAGGAGAACAGCTGCGCCAAA 520
|||||||| |||||| ||||||||||| ||| | |||||| ||||||||||| ||||| |
Sbjct 30 AGGATGCT-CGCCGCGACATCAAGTTTATATCACTTTTCGTGGAGAACAGCTACGCCACA 88
Query 521 ACTTTGTTAGCCATCTCGTGGAAGCCCTTAGGAGAAATGCGATCAATGTGTTTATAGAC- 579
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 89 ACTTCGTTAGCCATCTCGTGGAAGCCCTTAGGCGAAATGCGATCAATGTGTTTATAGACA 148
Query 580 A--ATCAAGAGCTTAGAGGTGAAGATATCAGCATTCTTTTGAAGAGGATAGAGGATTCTA 637
| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 149 ATGATCAAGAGCTTAGAGGTGAAGATATCAGCATTCTTTTGAAGAGGATCGAGTATTCTT 208
Query 638 GAATCGCCGTTGTTGTGTTCTCGAGCAGGTACACAGAATCAAGGTGGTGCTTGAGAGAGG 697
||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 209 GAATCTCCATTGTTGTGTTCTCGAGCAGGTACACAGAATCGAGGTGGTGCTTGAGAGAGG 268
Query 698 CTGTGAAGATCAAAGA 713
||||||||||||||||
Sbjct 269 CTGTGAAGATCAAAGA 284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5