BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338960
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67260.1 | Symbols: TCP1 | TCP family transcription factor ... 1171 0.0
> AT1G67260.1 | Symbols: TCP1 | TCP family transcription factor
| chr1:25168228-25169307 REVERSE LENGTH=1080
Length=1080
Score = 1171 bits (634), Expect = 0.0
Identities = 906/1032 (88%), Gaps = 40/1032 (4%)
Strand=Plus/Plus
Query 14 ACAATGATGGTAATAACAATGGAGCGTACCCTCTCTCTCTTTACCTTTCTTCACTCTCTG 73
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 23 ACAACGATGGTAATAACAATGGAGTGTACCCTCTCTCTCTTTACCTTTCTTCACTCTCTG 82
Query 74 GCCATCAAGACATCATTCATAATCCATACAACCATCAGTTAAAAGCATCTCCGGGCCATA 133
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 83 GCCATCAAGACATCATTCATAATCCCTACAACCATCAGTTAAAAGCATCTCCGGGCCATA 142
Query 134 TGGTATCAGCAGTTCCTGAATCTCTGATCGATTACATGGCGTTTAACTCAAACAATGTTG 193
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 143 TGGTATCAGCAGTTCCTGAATCTCTGATCGATTACATGGCGTTTAAGTCAAATAATGTTG 202
Query 194 TGAATCATCAAGGCTTTGAGTTTCCTGAGGTGTCCAAGGAAACCAAGAAGGTGGTGAAGA 253
||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 203 TGAATCAACAAGGCTTTGAGTTTCCTGAGGTGTCAAAGGAAATCAAGAAGGTGGTGAAGA 262
Query 254 AGGACCGACATAGCAAGATTCACACGGCACAAGGGCTTCGAGACAGGAGGGTTAGGCTTT 313
|||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||
Sbjct 263 AGGACCGACATAGCAAGATTCAAACGGCACAAGGGATTAGAGACAGGAGGGTTAGGCTTT 322
Query 314 CTATTGGGATTGCTCGCCAATTCTTCGATCTTCAGGATATGTTGGGGTTTGATAAAGCCA 373
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 323 CTATTGGGATTGCTCGCCAATTCTTTGATCTTCAGGATATGTTGGGGTTTGATAAAGCTA 382
Query 374 GTAAAACGTTAGACTGGCTGCTCAAGAAATCAAGAAAAGCCATCAAAGAGGTCGTACAAG 433
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 383 GTAAAACGTTAGACTGGCTGCTCAAGAAGTCAAGAAAAGCCATCAAAGAGGTCGTACAAG 442
Query 434 aaaaaaaTCTCAACAATGAAGATGAAGATTTTGGAAACAATGGAGGTGATGTGGAA---G 490
|||||| ||||||||||| ||||||||||||||||||| |||||| ||||| ||| |
Sbjct 443 CAAAAAACCTCAACAATGATGATGAAGATTTTGGAAACATTGGAGGCGATGTAGAACAAG 502
Query 491 AAgaggaggaggaggaggaAGA---TGGCGATAAGAGTTTTTTGTATGGTTCAAGCCCCG 547
|||||||| |||||||||| || |||||||||||| || ||||||||| |||||||
Sbjct 503 AAGAGGAGAAGGAGGAGGATGACAATGGCGATAAGAGCTTCGTGTATGGTTTGAGCCCCG 562
Query 548 ATTCCTGCGGAGAAAAAGTGGTATGTGAGGTCaagaaggcagaga-agagaaagaagaag 606
| | | | |||| ||||||||||||||| || |||||||| || | ||||||||||||
Sbjct 563 GGTACGGTGAAGAAGAAGTGGTATGTGAGGCCACGAAGGCAGGGATA-AGAAAGAAGAAG 621
Query 607 agtgaagTA-AGCAACATGTCATCAGAGGGATCAAG-AGCCAAAGCTAGAGGAAAAGCAA 664
||||| || || ||||| |||||| |||| | || |||||||||||||||||||||||
Sbjct 622 AGTGA-GTTGAGAAACATCTCATCAAAGGGG-CTAGGAGCCAAAGCTAGAGGAAAAGCAA 679
Query 665 AGGAG--A----------TG--G-CCTATGACCATCCGGAAACCGTCTCAGATATCACAC 709
||||| | || | ||||||| |||| || || | ||| ||||| ||||
Sbjct 680 AGGAGCGAACAAAAGAGATGATGGCCTATGATAATCCAGAGACTGCCTCTGATATTACAC 739
Query 710 AATCTGAAATCATGGACCCATTCAATAGGTCTATAATCTTTAATGAAGGAGAAGACATGA 769
||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||
Sbjct 740 AATCTGAAATCATGGACCCATTCAAGAGGTCTATAGTCTTCAATGAAGGAGAAGATATGA 799
Query 770 CACATTCTTT-CTACAAGGAAGCAATCGAAGAGTTTGATATTCAAGAATCTATCTTAACC 828
|||| |||| |||||||||| ||||||| |||||||||| |||||||||||||||||||
Sbjct 800 CACAC-CTTTTCTACAAGGAACCAATCGAGGAGTTTGATAATCAAGAATCTATCTTAACC 858
Query 829 ACGAGAAGGTTCAATCTACCGGCGAATATGGGTGAAAGTTACAATCAACGTAATGGGACA 888
| | | | | |||||| |||| |||||| |||||||||||||| |||||||| |
Sbjct 859 A--ATATGA--C--TCTACCAACGAAGATGGGTCAAAGTTACAATCAAAATAATGGGATA 912
Query 889 TTTATGTTGATAGATCA-AGGTTCTACCAGCAACTACAATGCCATTGATCTGCCTCAAAT 947
|||||||| ||||||| || ||||| ||||||||| ||| | ||| |||||||||||
Sbjct 913 CTTATGTTGGTAGATCAGAG-TTCTAGCAGCAACTATAATAC-ATT--TCTGCCTCAAAA 968
Query 948 TTTGGATTATAACTATGATCAGAACCCTTTTGTTGACCAAAGCTTTTGTGCAGTCACCGA 1007
||||||||||| |||||||| ||||||||| |||||||| ||| | || |||||||||
Sbjct 969 TTTGGATTATAGTTATGATCAAAACCCTTTTCATGACCAAACCTTATATGTAGTCACCGA 1028
Query 1008 CACGAATTTCCC 1019
|| ||||||||
Sbjct 1029 CAAAAATTTCCC 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5