BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338977
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67410.1 | Symbols: | Exostosin family protein | chr1:25251... 2019 0.0
> AT1G67410.1 | Symbols: | Exostosin family protein | chr1:25251193-25253667
REVERSE LENGTH=1805
Length=1805
Score = 2019 bits (1093), Expect = 0.0
Identities = 1228/1294 (95%), Gaps = 5/1294 (0%)
Strand=Plus/Plus
Query 1 ATGTACGGAAAAACAATATGCACAATCGTCTTCTTCATCTTCCTCGTTGCTTCTTTCTCA 60
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 100 ATGTACGGCAAAACAATATGTACAATCGTCTTCTTCATCTTCCTCGTTGCTTCATTCTCA 159
Query 61 ATCTACATGGGAACAGTCGATCCAAGACCTTACTTCTATCTCCTCCAATCACAACCCAAT 120
|||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 160 ATCTACATGGGAACCGTCGATCCAAGACCTTACTTCTACCTCCTCCAATCCCAACCCAAT 219
Query 121 GTAG---CTTCTCCTTGTAGCTCCACCGGAAAACCTCTCCGTGTCTTCATGTACGATCTC 177
| || ||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 220 GGAGCTTCTTCTCCTTGTAGCTCCTCTGGAAAACCTCTCCGTGTCTTCATGTACGATCTC 279
Query 178 CCACGCAAGTTTAATATCGCGATGATGGATCCTCATAGCTCAGATGTTGAGCCTCTCACA 237
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 280 CCACGAAAGTTTAATATCGCGATGATGGATCCTCATAGCTCAGATGTTGAGCCTATCACA 339
Query 238 GGGAAGAATTTACCTTCTTGGCCTCAGACTTCTGGGATTAAGAGACAACATAGCGTTGAG 297
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 340 GGGAAGAATTTACCTTCTTGGCCTCAGACTTCTGGGATTAAAAGACAACATAGCGTTGAG 399
Query 298 TATTGGCTTATGGCTTCTCTTCTTAATGGTGGTGATGATGAGAATGAAGCAATTAGGGTT 357
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 400 TATTGGCTTATGGCTTCTCTTCTTAACGGTGGTGAGGATGAGAATGAAGCAATTAGGGTT 459
Query 358 TTTGATCCTGATTTGGCGGATGCGTTTTATGTTCCttttttttCTTCGTTGAGTTTTAAC 417
|||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 460 TTTGATCCGGATTTGGCGGATGTGTTTTATGTTCCTTTTTTCTCTTCGTTGAGTTTTAAT 519
Query 418 ACTCATGGGAAGAACATGACTGATCCAGATACTGAATTTGATCGGCAATTACAGGTTGAG 477
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 520 ACTCATGGGAAGAACATGACTGATCCAGATACTGAATTTGATCGGCTATTACAGGTTGAG 579
Query 478 TTAATGGAGTTTCTTGAGGGTTCTAAGTATTGGAATCGATCAGGAGGTAAAGATCATGTG 537
|||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 580 TTAATGGAGTTTCTTGAGAATTCGAAGTATTGGAATCGTTCAGGAGGTAAAGATCATGTG 639
Query 538 ATTCCGATGACACATCCTAATGCTTTTAGATTTCTGAGGCAACAAGTGAATGCATCGATT 597
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 640 ATTCCGATGACACATCCTAATGCTTTCAGATTTCTAAGGCAACAAGTGAATGCGTCGATT 699
Query 598 CTCATTGTTGTGGATTTTGGGCGTTACGCTAAGGACATGGCACGTTTAAGTAAAGATGTG 657
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||
Sbjct 700 CTCATTGTTGTGGATTTTGGGCGTTATTCTAAAGACATGGCACGTTTAAGTAAAGACGTA 759
Query 658 GTTTCTCCTTATGTTCATGTTGTTGAGTCTTTGAATGAGGAGGATGATGATGGTTTGACG 717
|||||||||||||| |||||||||||||||||||||||||||| ||||||||| || |
Sbjct 760 GTTTCTCCTTATGTACATGTTGTTGAGTCTTTGAATGAGGAGGGCGATGATGGTATG-GG 818
Query 718 -GATCCGTTTGAGGCTCGTACTACGCTTCTTTACTTTCGTGGGAATACGGTTAGGAAAGA 776
||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 819 AGATCCTTTTGAGGCTCGTACAACGCTTCTTTACTTTCGTGGGAATACAGTTAGGAAAGA 878
Query 777 CGAAGGTAAAATCCGTCTGAGGTTGGAGAAGTTATTAACTGGTAACTCTGATGTTCACTT 836
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 879 TGAAGGTAAAATTCGTCTGAGGTTGGAGAAGTTATTAGCTGGTAACTCTGATGTTCACTT 938
Query 837 TGAGAAAAGTGTAGCAACTACACAAAACATCAAAGTGTCTACGGAAGGGATGAGATCATC 896
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 939 TGAGAAAAGTGTAGCTACTACACAAAACATCAAAGTGTCTACGGAAGGGATGAGATCTTC 998
Query 897 AAAATTCTGTCTGCATCCAGCTGGAGACACTCCATCTTCATGCCGCTTATTTGATGCCAT 956
|| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 999 TAAGTTTTGTCTGCATCCAGCTGGAGACACTCCATCTTCATGCCGGTTATTTGATGCCAT 1058
Query 957 TGTCAGTCACTGCATTCCGGTCATCATAAGCGACAAAATCGAACTGCCCTTTGAAGATGA 1016
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1059 TGTCAGTCACTGCATTCCGGTCATCATAAGCGACAAAATCGAGCTGCCCTTTGAAGATGA 1118
Query 1017 AATAGACTACTCAGAATTCTCACTCTTTTTCTCAATAAAAGAGTCACTAGAACCGGGCTA 1076
|||||||||||| ||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 1119 AATAGACTACTCGGAATTCTCACTGTTTTTCTCAATAAAAGAGTCGCTTGAACCGGGCTA 1178
Query 1077 CATCCTCAACAAACTCCGCCAGTTTCCCAAGGAGAAATGGCTGGAAATGTGGAAACGCCT 1136
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1179 CATCCTCAACAACCTCCGCCAATTTCCCAAGGAGAAATGGCTGGAAATGTGGAAACGACT 1238
Query 1137 GAAGAACGTATCTCATCACTTCGAGTTCCAGTACCCACCAAAGAGAGAAGATGCAGTAAA 1196
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1239 GAAGAACGTATCTCATCACTTTGAGTTCCAGTACCCGCCAAAGAGAGAAGATGCAGTAAA 1298
Query 1197 CATGTTGTGGAGACAGGTGAAACACAAAATCCCTAATGTCAAGCTCGCTGTACATAGAAA 1256
||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1299 CATGTTGTGGAGACAAGTGAAACACAAGATCCCTTATGTCAAGCTCGCTGTACATAGAAA 1358
Query 1257 CCGGAGGTTGAAAGTCCCTGATTGGTGGCTTTGA 1290
||||||||||||||||||||||||||||||||||
Sbjct 1359 CCGGAGGTTGAAAGTCCCTGATTGGTGGCTTTGA 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63453488880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5