BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338989
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44120.1 | Symbols: | Armadillo/beta-catenin-like repeat ; ... 990 0.0
AT1G44125.1 | Symbols: | Potential natural antisense gene, loc... 928 0.0
> AT1G44120.1 | Symbols: | Armadillo/beta-catenin-like repeat
; C2 calcium/lipid-binding domain (CaLB) protein | chr1:16780610-16787414
FORWARD LENGTH=6345
Length=6345
Score = 990 bits (536), Expect = 0.0
Identities = 605/639 (95%), Gaps = 2/639 (0%)
Strand=Plus/Plus
Query 511 AGCACAGTGATCTTAGCCATCGACACATTGATCATCCATGCA-AATCAAGACTCCTCAAG 569
|||||||||||||||||||||||| |||||||||||| || | ||||||||||| |||||
Sbjct 5017 AGCACAGTGATCTTAGCCATCGACGCATTGATCATCCGTG-AGAATCAAGACTCGTCAAG 5075
Query 570 TGTTCAAGAGATGGCAGAAGCCGGTGCACTCGACGCATTACTAGATCTACTAAGATCACA 629
|||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 5076 CGTTCAAGAAATGGCAGAATCCAGTGCACTCGACGCATTACTAGATCTACTAAGATCACA 5135
Query 630 CCACTGCGAAGAACTCTCCGCAAGATTACTCGAATTAATACTACGCAATCCAAAAGTTAG 689
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 5136 CCACTGCGAAGAACTCTCAGCAAGATTACTCGAATTAATACTACGCAATCCAAAGGTTAG 5195
Query 690 AGAGACAAAGATATGCCAGTTTGTACTAACCCCTTTATCTGAGTACATACTAGGCCTAGA 749
||||||||||||||| ||||||||||| |||||| |||| ||||||||||||| || |||
Sbjct 5196 AGAGACAAAGATATGTCAGTTTGTACTTACCCCTCTATCAGAGTACATACTAGACCCAGA 5255
Query 750 CACAGTATCAGAATCCGCAAAAATTCTCATAGCAATGGCTCTAGGTGACATCTCTCAACA 809
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5256 CACAATATCAGAATCCGCAAAAATTCTCATAGCAATGGCTCTAGGTGACATCTCTCAACA 5315
Query 810 CGAAGGACTCGCTAAAGCCACAGACTCGCCCGTGGCATGTCGTGCGTTAATCAGCTTGCT 869
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 5316 CGAAGGACTCGCTAAAGCCACGGACTCGCCCGTGGCATGTCGTGCGTTAATCAGCTTGCT 5375
Query 870 CGAGGAGGAACCGAGCGAGGAAATGCAAATGGTTGTGATACGTGCTTTGGGAAACTTCGC 929
|| || |||||||||||||||||||||||||||||||| |||||||||| |||||| ||
Sbjct 5376 TGAAGATGAACCGAGCGAGGAAATGCAAATGGTTGTGATGCGTGCTTTGGAAAACTTTGC 5435
Query 930 AATGCATAGTAGAACAAGTCGTAAAGCTATGGCTGAAGCTGGTGGAGTATATTTAGTTCA 989
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 5436 AATGCATAGTAGAACAAGTCGTAAAGCTATGGCTGAAGCTGGTGGAGTATATTGGGTTCA 5495
Query 990 AGAAATGCTAAAATCTTGTAATCCACAAGTTTCTACACAAGCAGCTCTAATTATCAAATC 1049
|||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 5496 GGAAATGCTTAGATCTAGTAATCCACAAGTTTCTACACAAGCAGCTCTAATTATCAAATC 5555
Query 1050 TCTCTTCTCTAATCATACACTTCAAGAATACGTCTCCGGCGAAATCATCAAATCTCTAAC 1109
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 5556 TCTCTTCTCTAATCATACACTTCAAGAATACGTCTCTGGTGAAATCATCAAATCTCTAAC 5615
Query 1110 AAATGCGATGGAGAGAGAGTTTTGGACAACGGCGGCGAT 1148
||||||||||||||||||||||||||||||| |||||||
Sbjct 5616 AAATGCGATGGAGAGAGAGTTTTGGACAACGACGGCGAT 5654
Score = 725 bits (392), Expect = 0.0
Identities = 466/502 (93%), Gaps = 3/502 (1%)
Strand=Plus/Plus
Query 11 CAACTGTCCCGATCTCCTCCAAGTTCTTTGTGTT-GGTAATCGCAGATTTTTTCAGAGTT 69
||||| ||| ||| || |||||||||||||||| |||||||||||| |||||||||||
Sbjct 4366 CAACTCTCCAAATCGCCGCCAAGTTCTTTGTGTTCTGTAATCGCAGATCTTTTCAGAGTT 4425
Query 70 TTGACGAACGTTGGTGTTGTAGCTAGAAGCCAAGAGGCTATAAAAATGGTACAACCGCTT 129
|||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||
Sbjct 4426 TTGACGAACGTTGGTGTTATAGCTCGAAGCCAAGACGCTATAAAAATGGTACAACCGCTC 4485
Query 130 CTCTTGATTTTGCTTAGGCAAGACTTGGATTTTCAAGGCCAACTCGGTGGTTTACAAGGT 189
|| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 4486 CTTTTGATTTTGCTTAGACAAGACTTGGATTTTCAAGGTCAACTCGGTGGTTTACAAGCT 4545
Query 190 ATAGCAAACATCTTGGAGAAGCCAATGGTTCTTGAATCATTAAAAATGGCATCATCCGCA 249
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||
Sbjct 4546 ATAGCAAACATCTTGGAGAAGCCAATGGTTCTTGAATCATTGAAAATTGCATCTTCCACA 4605
Query 250 ATTATTATGCCTTTGATACCACTGCTTGAATCTGAATCTATAGCGGTCCAAAATGCAACC 309
|| |||||||||||||||||||||||||| || || || ||||||||| |||||||||||
Sbjct 4606 ATCATTATGCCTTTGATACCACTGCTTGAGTCCGAGTCAATAGCGGTCAAAAATGCAACC 4665
Query 310 ACAGA-ACTACTGACCTCTCTACTCGAAATGCAACGTTTCCAAGAAGAGATAACGACCAA 368
||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 4666 ACA-ATACTACTGACCTCTCTACTCGAAATGCAACGTTTCCAAGAAGAGATAACAACCAA 4724
Query 369 AAATCTCATTGCTCCTCTTGTGAAACTTGTAGGGATCAGAGTAAGAAACTTACAAGAGAT 428
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 4725 AAATCTCATTGCTCCTCTAGTGAAACTGGTAGGGATCAGAGTAAGAAACTTACAAGAGAT 4784
Query 429 AGCATTGATGGGTTTAGAGAAATCCTCAGTTACATGGACAAAGGAGGTAGCAGATGCCGG 488
|||||||||||||||||||| ||| |||||||||||| |||| |||||||||||| ||||
Sbjct 4785 AGCATTGATGGGTTTAGAGAGATCTTCAGTTACATGGCCAAAAGAGGTAGCAGATACCGG 4844
Query 489 AGGAATTCAAGAGCTCTCCAAG 510
||||||||||||||||||||||
Sbjct 4845 AGGAATTCAAGAGCTCTCCAAG 4866
Score = 401 bits (217), Expect = 8e-111
Identities = 246/259 (95%), Gaps = 6/259 (2%)
Strand=Plus/Plus
Query 1144 GCGATTCCGGTTTTGCAATTGATGATGAAATCGAAATCGAAATCGAAATCTCCAGCTCCG 1203
|||||||||||| ||||||||||||||||||| | |||| |||||||||||||||
Sbjct 5878 GCGATTCCGGTTCTGCAATTGATGATGAAATC---A---AAATTGAAATCTCCAGCTCCA 5931
Query 1204 TCGAGCTTCCATGAGAGAGGTAACAGTCTCTTGAATTGTTTGCCGGGAAGTCTCACGGTG 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5932 TCGAGCTTCCATGAGAGAGGTAACAGTCTCTTGAATTGTTTGCCGGGAAGTCTCACGGTG 5991
Query 1264 GCGATTAAACGCGGTGATAATCTGAAACGGTCTAACGCGTTTTGCAGATTAATCATCGAT 1323
||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 5992 GCGATTAAACGCGGTGATAATCTGAAACGTTCAAATGCGTTTTGCAGATTAATCATCGAC 6051
Query 1324 AATTGTCCCACCAAGAAAACCAAGGTTGTGAAACGAAGCAGCTCACCGGTTTGGAAAGAA 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6052 AATTGTCCCACCAAGAAAACCAAGGTTGTGAAACGAAGCAGCTCACCGGTTTGGAAAGAA 6111
Query 1384 TCATTTACATGGGACTTTG 1402
|||||||||||||||||||
Sbjct 6112 TCATTTACATGGGACTTTG 6130
> AT1G44125.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT1G44120 | chr1:16780606-16786764 REVERSE
LENGTH=5159
Length=5159
Score = 928 bits (502), Expect = 0.0
Identities = 569/602 (95%), Gaps = 2/602 (0%)
Strand=Plus/Minus
Query 511 AGCACAGTGATCTTAGCCATCGACACATTGATCATCCATGCA-AATCAAGACTCCTCAAG 569
|||||||||||||||||||||||| |||||||||||| || | ||||||||||| |||||
Sbjct 1047 AGCACAGTGATCTTAGCCATCGACGCATTGATCATCCGTG-AGAATCAAGACTCGTCAAG 989
Query 570 TGTTCAAGAGATGGCAGAAGCCGGTGCACTCGACGCATTACTAGATCTACTAAGATCACA 629
|||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 988 CGTTCAAGAAATGGCAGAATCCAGTGCACTCGACGCATTACTAGATCTACTAAGATCACA 929
Query 630 CCACTGCGAAGAACTCTCCGCAAGATTACTCGAATTAATACTACGCAATCCAAAAGTTAG 689
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 928 CCACTGCGAAGAACTCTCAGCAAGATTACTCGAATTAATACTACGCAATCCAAAGGTTAG 869
Query 690 AGAGACAAAGATATGCCAGTTTGTACTAACCCCTTTATCTGAGTACATACTAGGCCTAGA 749
||||||||||||||| ||||||||||| |||||| |||| ||||||||||||| || |||
Sbjct 868 AGAGACAAAGATATGTCAGTTTGTACTTACCCCTCTATCAGAGTACATACTAGACCCAGA 809
Query 750 CACAGTATCAGAATCCGCAAAAATTCTCATAGCAATGGCTCTAGGTGACATCTCTCAACA 809
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 CACAATATCAGAATCCGCAAAAATTCTCATAGCAATGGCTCTAGGTGACATCTCTCAACA 749
Query 810 CGAAGGACTCGCTAAAGCCACAGACTCGCCCGTGGCATGTCGTGCGTTAATCAGCTTGCT 869
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 748 CGAAGGACTCGCTAAAGCCACGGACTCGCCCGTGGCATGTCGTGCGTTAATCAGCTTGCT 689
Query 870 CGAGGAGGAACCGAGCGAGGAAATGCAAATGGTTGTGATACGTGCTTTGGGAAACTTCGC 929
|| || |||||||||||||||||||||||||||||||| |||||||||| |||||| ||
Sbjct 688 TGAAGATGAACCGAGCGAGGAAATGCAAATGGTTGTGATGCGTGCTTTGGAAAACTTTGC 629
Query 930 AATGCATAGTAGAACAAGTCGTAAAGCTATGGCTGAAGCTGGTGGAGTATATTTAGTTCA 989
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 628 AATGCATAGTAGAACAAGTCGTAAAGCTATGGCTGAAGCTGGTGGAGTATATTGGGTTCA 569
Query 990 AGAAATGCTAAAATCTTGTAATCCACAAGTTTCTACACAAGCAGCTCTAATTATCAAATC 1049
|||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 GGAAATGCTTAGATCTAGTAATCCACAAGTTTCTACACAAGCAGCTCTAATTATCAAATC 509
Query 1050 TCTCTTCTCTAATCATACACTTCAAGAATACGTCTCCGGCGAAATCATCAAATCTCTAAC 1109
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 508 TCTCTTCTCTAATCATACACTTCAAGAATACGTCTCTGGTGAAATCATCAAATCTCTAAC 449
Query 1110 AA 1111
||
Sbjct 448 AA 447
Score = 171 bits (92), Expect = 2e-41
Identities = 113/122 (93%), Gaps = 6/122 (5%)
Strand=Plus/Minus
Query 1144 GCGATTCCGGTTTTGCAATTGATGATGAAATCGAAATCGAAATCGAAATCTCCAGCTCCG 1203
|||||||||||| ||||||||||||||||||| | |||| |||||||||||||||
Sbjct 116 GCGATTCCGGTTCTGCAATTGATGATGAAATC---A---AAATTGAAATCTCCAGCTCCA 63
Query 1204 TCGAGCTTCCATGAGAGAGGTAACAGTCTCTTGAATTGTTTGCCGGGAAGTCTCACGGTG 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TCGAGCTTCCATGAGAGAGGTAACAGTCTCTTGAATTGTTTGCCGGGAAGTCTCACGGTG 3
Query 1264 GC 1265
||
Sbjct 2 GC 1
Score = 63.9 bits (34), Expect = 4e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Minus
Query 1112 ATGCGATGGAGAGAGAGTTTTGGACAACGGCGGCGAT 1148
||||||||||||||||||||||||||||| |||||||
Sbjct 376 ATGCGATGGAGAGAGAGTTTTGGACAACGACGGCGAT 340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71585977170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5