BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg338989 Length=1452 Score E Sequences producing significant alignments: (Bits) Value AT1G44120.1 | Symbols: | Armadillo/beta-catenin-like repeat ; ... 990 0.0 AT1G44125.1 | Symbols: | Potential natural antisense gene, loc... 928 0.0 > AT1G44120.1 | Symbols: | Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein | chr1:16780610-16787414 FORWARD LENGTH=6345 Length=6345 Score = 990 bits (536), Expect = 0.0 Identities = 605/639 (95%), Gaps = 2/639 (0%) Strand=Plus/Plus Query 511 AGCACAGTGATCTTAGCCATCGACACATTGATCATCCATGCA-AATCAAGACTCCTCAAG 569 |||||||||||||||||||||||| |||||||||||| || | ||||||||||| ||||| Sbjct 5017 AGCACAGTGATCTTAGCCATCGACGCATTGATCATCCGTG-AGAATCAAGACTCGTCAAG 5075 Query 570 TGTTCAAGAGATGGCAGAAGCCGGTGCACTCGACGCATTACTAGATCTACTAAGATCACA 629 |||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 5076 CGTTCAAGAAATGGCAGAATCCAGTGCACTCGACGCATTACTAGATCTACTAAGATCACA 5135 Query 630 CCACTGCGAAGAACTCTCCGCAAGATTACTCGAATTAATACTACGCAATCCAAAAGTTAG 689 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 5136 CCACTGCGAAGAACTCTCAGCAAGATTACTCGAATTAATACTACGCAATCCAAAGGTTAG 5195 Query 690 AGAGACAAAGATATGCCAGTTTGTACTAACCCCTTTATCTGAGTACATACTAGGCCTAGA 749 ||||||||||||||| ||||||||||| |||||| |||| ||||||||||||| || ||| Sbjct 5196 AGAGACAAAGATATGTCAGTTTGTACTTACCCCTCTATCAGAGTACATACTAGACCCAGA 5255 Query 750 CACAGTATCAGAATCCGCAAAAATTCTCATAGCAATGGCTCTAGGTGACATCTCTCAACA 809 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5256 CACAATATCAGAATCCGCAAAAATTCTCATAGCAATGGCTCTAGGTGACATCTCTCAACA 5315 Query 810 CGAAGGACTCGCTAAAGCCACAGACTCGCCCGTGGCATGTCGTGCGTTAATCAGCTTGCT 869 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 5316 CGAAGGACTCGCTAAAGCCACGGACTCGCCCGTGGCATGTCGTGCGTTAATCAGCTTGCT 5375 Query 870 CGAGGAGGAACCGAGCGAGGAAATGCAAATGGTTGTGATACGTGCTTTGGGAAACTTCGC 929 || || |||||||||||||||||||||||||||||||| |||||||||| |||||| || Sbjct 5376 TGAAGATGAACCGAGCGAGGAAATGCAAATGGTTGTGATGCGTGCTTTGGAAAACTTTGC 5435 Query 930 AATGCATAGTAGAACAAGTCGTAAAGCTATGGCTGAAGCTGGTGGAGTATATTTAGTTCA 989 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 5436 AATGCATAGTAGAACAAGTCGTAAAGCTATGGCTGAAGCTGGTGGAGTATATTGGGTTCA 5495 Query 990 AGAAATGCTAAAATCTTGTAATCCACAAGTTTCTACACAAGCAGCTCTAATTATCAAATC 1049 |||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 5496 GGAAATGCTTAGATCTAGTAATCCACAAGTTTCTACACAAGCAGCTCTAATTATCAAATC 5555 Query 1050 TCTCTTCTCTAATCATACACTTCAAGAATACGTCTCCGGCGAAATCATCAAATCTCTAAC 1109 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 5556 TCTCTTCTCTAATCATACACTTCAAGAATACGTCTCTGGTGAAATCATCAAATCTCTAAC 5615 Query 1110 AAATGCGATGGAGAGAGAGTTTTGGACAACGGCGGCGAT 1148 ||||||||||||||||||||||||||||||| ||||||| Sbjct 5616 AAATGCGATGGAGAGAGAGTTTTGGACAACGACGGCGAT 5654 Score = 725 bits (392), Expect = 0.0 Identities = 466/502 (93%), Gaps = 3/502 (1%) Strand=Plus/Plus Query 11 CAACTGTCCCGATCTCCTCCAAGTTCTTTGTGTT-GGTAATCGCAGATTTTTTCAGAGTT 69 ||||| ||| ||| || |||||||||||||||| |||||||||||| ||||||||||| Sbjct 4366 CAACTCTCCAAATCGCCGCCAAGTTCTTTGTGTTCTGTAATCGCAGATCTTTTCAGAGTT 4425 Query 70 TTGACGAACGTTGGTGTTGTAGCTAGAAGCCAAGAGGCTATAAAAATGGTACAACCGCTT 129 |||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| Sbjct 4426 TTGACGAACGTTGGTGTTATAGCTCGAAGCCAAGACGCTATAAAAATGGTACAACCGCTC 4485 Query 130 CTCTTGATTTTGCTTAGGCAAGACTTGGATTTTCAAGGCCAACTCGGTGGTTTACAAGGT 189 || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| | Sbjct 4486 CTTTTGATTTTGCTTAGACAAGACTTGGATTTTCAAGGTCAACTCGGTGGTTTACAAGCT 4545 Query 190 ATAGCAAACATCTTGGAGAAGCCAATGGTTCTTGAATCATTAAAAATGGCATCATCCGCA 249 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| || Sbjct 4546 ATAGCAAACATCTTGGAGAAGCCAATGGTTCTTGAATCATTGAAAATTGCATCTTCCACA 4605 Query 250 ATTATTATGCCTTTGATACCACTGCTTGAATCTGAATCTATAGCGGTCCAAAATGCAACC 309 || |||||||||||||||||||||||||| || || || ||||||||| ||||||||||| Sbjct 4606 ATCATTATGCCTTTGATACCACTGCTTGAGTCCGAGTCAATAGCGGTCAAAAATGCAACC 4665 Query 310 ACAGA-ACTACTGACCTCTCTACTCGAAATGCAACGTTTCCAAGAAGAGATAACGACCAA 368 ||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 4666 ACA-ATACTACTGACCTCTCTACTCGAAATGCAACGTTTCCAAGAAGAGATAACAACCAA 4724 Query 369 AAATCTCATTGCTCCTCTTGTGAAACTTGTAGGGATCAGAGTAAGAAACTTACAAGAGAT 428 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 4725 AAATCTCATTGCTCCTCTAGTGAAACTGGTAGGGATCAGAGTAAGAAACTTACAAGAGAT 4784 Query 429 AGCATTGATGGGTTTAGAGAAATCCTCAGTTACATGGACAAAGGAGGTAGCAGATGCCGG 488 |||||||||||||||||||| ||| |||||||||||| |||| |||||||||||| |||| Sbjct 4785 AGCATTGATGGGTTTAGAGAGATCTTCAGTTACATGGCCAAAAGAGGTAGCAGATACCGG 4844 Query 489 AGGAATTCAAGAGCTCTCCAAG 510 |||||||||||||||||||||| Sbjct 4845 AGGAATTCAAGAGCTCTCCAAG 4866 Score = 401 bits (217), Expect = 8e-111 Identities = 246/259 (95%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 1144 GCGATTCCGGTTTTGCAATTGATGATGAAATCGAAATCGAAATCGAAATCTCCAGCTCCG 1203 |||||||||||| ||||||||||||||||||| | |||| ||||||||||||||| Sbjct 5878 GCGATTCCGGTTCTGCAATTGATGATGAAATC---A---AAATTGAAATCTCCAGCTCCA 5931 Query 1204 TCGAGCTTCCATGAGAGAGGTAACAGTCTCTTGAATTGTTTGCCGGGAAGTCTCACGGTG 1263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5932 TCGAGCTTCCATGAGAGAGGTAACAGTCTCTTGAATTGTTTGCCGGGAAGTCTCACGGTG 5991 Query 1264 GCGATTAAACGCGGTGATAATCTGAAACGGTCTAACGCGTTTTGCAGATTAATCATCGAT 1323 ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| Sbjct 5992 GCGATTAAACGCGGTGATAATCTGAAACGTTCAAATGCGTTTTGCAGATTAATCATCGAC 6051 Query 1324 AATTGTCCCACCAAGAAAACCAAGGTTGTGAAACGAAGCAGCTCACCGGTTTGGAAAGAA 1383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6052 AATTGTCCCACCAAGAAAACCAAGGTTGTGAAACGAAGCAGCTCACCGGTTTGGAAAGAA 6111 Query 1384 TCATTTACATGGGACTTTG 1402 ||||||||||||||||||| Sbjct 6112 TCATTTACATGGGACTTTG 6130 > AT1G44125.1 | Symbols: | Potential natural antisense gene, locus overlaps with AT1G44120 | chr1:16780606-16786764 REVERSE LENGTH=5159 Length=5159 Score = 928 bits (502), Expect = 0.0 Identities = 569/602 (95%), Gaps = 2/602 (0%) Strand=Plus/Minus Query 511 AGCACAGTGATCTTAGCCATCGACACATTGATCATCCATGCA-AATCAAGACTCCTCAAG 569 |||||||||||||||||||||||| |||||||||||| || | ||||||||||| ||||| Sbjct 1047 AGCACAGTGATCTTAGCCATCGACGCATTGATCATCCGTG-AGAATCAAGACTCGTCAAG 989 Query 570 TGTTCAAGAGATGGCAGAAGCCGGTGCACTCGACGCATTACTAGATCTACTAAGATCACA 629 |||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 988 CGTTCAAGAAATGGCAGAATCCAGTGCACTCGACGCATTACTAGATCTACTAAGATCACA 929 Query 630 CCACTGCGAAGAACTCTCCGCAAGATTACTCGAATTAATACTACGCAATCCAAAAGTTAG 689 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 928 CCACTGCGAAGAACTCTCAGCAAGATTACTCGAATTAATACTACGCAATCCAAAGGTTAG 869 Query 690 AGAGACAAAGATATGCCAGTTTGTACTAACCCCTTTATCTGAGTACATACTAGGCCTAGA 749 ||||||||||||||| ||||||||||| |||||| |||| ||||||||||||| || ||| Sbjct 868 AGAGACAAAGATATGTCAGTTTGTACTTACCCCTCTATCAGAGTACATACTAGACCCAGA 809 Query 750 CACAGTATCAGAATCCGCAAAAATTCTCATAGCAATGGCTCTAGGTGACATCTCTCAACA 809 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 808 CACAATATCAGAATCCGCAAAAATTCTCATAGCAATGGCTCTAGGTGACATCTCTCAACA 749 Query 810 CGAAGGACTCGCTAAAGCCACAGACTCGCCCGTGGCATGTCGTGCGTTAATCAGCTTGCT 869 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 748 CGAAGGACTCGCTAAAGCCACGGACTCGCCCGTGGCATGTCGTGCGTTAATCAGCTTGCT 689 Query 870 CGAGGAGGAACCGAGCGAGGAAATGCAAATGGTTGTGATACGTGCTTTGGGAAACTTCGC 929 || || |||||||||||||||||||||||||||||||| |||||||||| |||||| || Sbjct 688 TGAAGATGAACCGAGCGAGGAAATGCAAATGGTTGTGATGCGTGCTTTGGAAAACTTTGC 629 Query 930 AATGCATAGTAGAACAAGTCGTAAAGCTATGGCTGAAGCTGGTGGAGTATATTTAGTTCA 989 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 628 AATGCATAGTAGAACAAGTCGTAAAGCTATGGCTGAAGCTGGTGGAGTATATTGGGTTCA 569 Query 990 AGAAATGCTAAAATCTTGTAATCCACAAGTTTCTACACAAGCAGCTCTAATTATCAAATC 1049 |||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 568 GGAAATGCTTAGATCTAGTAATCCACAAGTTTCTACACAAGCAGCTCTAATTATCAAATC 509 Query 1050 TCTCTTCTCTAATCATACACTTCAAGAATACGTCTCCGGCGAAATCATCAAATCTCTAAC 1109 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 508 TCTCTTCTCTAATCATACACTTCAAGAATACGTCTCTGGTGAAATCATCAAATCTCTAAC 449 Query 1110 AA 1111 || Sbjct 448 AA 447 Score = 171 bits (92), Expect = 2e-41 Identities = 113/122 (93%), Gaps = 6/122 (5%) Strand=Plus/Minus Query 1144 GCGATTCCGGTTTTGCAATTGATGATGAAATCGAAATCGAAATCGAAATCTCCAGCTCCG 1203 |||||||||||| ||||||||||||||||||| | |||| ||||||||||||||| Sbjct 116 GCGATTCCGGTTCTGCAATTGATGATGAAATC---A---AAATTGAAATCTCCAGCTCCA 63 Query 1204 TCGAGCTTCCATGAGAGAGGTAACAGTCTCTTGAATTGTTTGCCGGGAAGTCTCACGGTG 1263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62 TCGAGCTTCCATGAGAGAGGTAACAGTCTCTTGAATTGTTTGCCGGGAAGTCTCACGGTG 3 Query 1264 GC 1265 || Sbjct 2 GC 1 Score = 63.9 bits (34), Expect = 4e-09 Identities = 36/37 (97%), Gaps = 0/37 (0%) Strand=Plus/Minus Query 1112 ATGCGATGGAGAGAGAGTTTTGGACAACGGCGGCGAT 1148 ||||||||||||||||||||||||||||| ||||||| Sbjct 376 ATGCGATGGAGAGAGAGTTTTGGACAACGACGGCGAT 340 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71585977170 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5