BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338999
Length=2271
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67580.1 | Symbols: | Protein kinase superfamily protein | ... 3496 0.0
> AT1G67580.1 | Symbols: | Protein kinase superfamily protein
| chr1:25327284-25331379 REVERSE LENGTH=3116
Length=3116
Score = 3496 bits (1893), Expect = 0.0
Identities = 2154/2278 (95%), Gaps = 26/2278 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCTGGGAGGAACT-TAAGATACCCTGACCATGAATTGAGAGACCAGGAATCGAA 59
||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||||||
Sbjct 415 ATGGCGGCTGGGAGGAA-TATAAGATATCCAGACCATGAACTGAGAGACCAGGAATCGAA 473
Query 60 TTCTAGATTTTCTAGGCGGGATAGTGCTTATTCGAACGAGGATTATGACCATGTTACGAA 119
|||||||||||| |||||||||||||||||| |||||||||||||| | ||||||| |||
Sbjct 474 TTCTAGATTTTCCAGGCGGGATAGTGCTTATGCGAACGAGGATTATAATCATGTTAGGAA 533
Query 120 CGGTGCTCTTGATAATGAAAAGGGACGGGTTAGGAATCTAAGACACGTGGATAGTGGTAA 179
||||||| ||||||||| ||||||||||||||| |||||||||||| | ||
Sbjct 534 CGGTGCTATTGATAATGGAAAGGGACGGGTTAGTAATCTAAGACAC-------G-GG--- 582
Query 180 AGATAGAGATAGATTTAGGCCTGGGGCTAGAAAGCAAGAGAACGAAATGGTTAATAGTGG 239
|||||||||||| ||| | |||| |||||| || |||||||| ||||||||| ||||||
Sbjct 583 -GATAGAGATAGAATTAAGTCTGGAGCTAGACAGGAAGAGAACAAAATGGTTAGTAGTGG 641
Query 240 GTTTCGGTTGTCGAAGAGCAATCCAGGTAGTAGGGAAGT-CTTACTTGATCGTGGTCCTA 298
||||||||| ||||||||||||||||||||||| ||||| ||| | |||| ||||||||
Sbjct 642 GTTTCGGTTATCGAAGAGCAATCCAGGTAGTAGAGAAGTATTTA-TCGATCTTGGTCCTA 700
Query 299 AAAGATGCGTGTTTTCAGCTCTGTCTGTGGATAGGGAACCAGGTGAGCTCTCTAGTGAGA 358
||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||||||||
Sbjct 701 AAAGATGCGGGTTTTCAGCTAGGTCTGTGGACAGGGAACCAGGCGAGCTCTCTAGTGAGA 760
Query 359 GTGGGTCGGATGATTTGATTGAGTCGGAATCACTGGCGAAAAATAATGGAGGTGTGAAGG 418
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 761 GTGGGTCGGATGATTTGATTGAGTCGGAATCACTGGCGAAAGTTAATGGAGTTGTGAAGG 820
Query 419 AGGTAGAGAATAGAGTTCAAAGTCCTGTAGAAAAGAAGAGAAAGTTTTCACCAATAGTAT 478
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 821 AGGTAGAGAATAGAGCTCAAAGTCCTGTGGAAAAGAAGAGAAAGTTTTCACCAATAGTAT 880
Query 479 GGGACAGAGATGACCATGATAGAAGTAATTTGAGCAGAAATGAAAAACCTCTGGAGGTTA 538
|||| || ||||||||||| |||||||||||||||||||||||||||||| ||||||| |
Sbjct 881 GGGATAGGGATGACCATGAGAGAAGTAATTTGAGCAGAAATGAAAAACCTGTGGAGGTCA 940
Query 539 TTCCTCTTCCTCCCCCACCACCACTAATTAAGAGGTCAAGCCAGTCACCTAGTGTCAGTT 598
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 941 CTCCTCTTCCTCCCCCACCACCACTAGTTAAGAGGTCAAGCCAGTCACCTAGTGTCAGTT 1000
Query 599 GTGGTGGTAATTCTCATTTTTCACCTGCAAAGAGTAACATGCATCAAGATCCCGTGGAAG 658
|||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||
Sbjct 1001 GTGGTGGTAATTCTCATTATTCACCTGCAAAGAGTGACATGCATCAAGATCCTGTGGAAG 1060
Query 659 TTGGTGTTTCTGCGGTTTCTGTGGCTGCTTTATCACCTTCGGTAGAGATGTCTTCTCTGT 718
|||||||||||||||||||| || ||||||| |||||||||||||||||||| ||| |||
Sbjct 1061 TTGGTGTTTCTGCGGTTTCTATGCCTGCTTTGTCACCTTCGGTAGAGATGTCCTCTTTGT 1120
Query 719 GTGTGGTAGAACAATCATCAAATGCTGGGCAGGATGGCAAACAAGAGGATGCAACACACC 778
||||||||||||| ||||||||||||| |||||||| |||||||||| ||||||||||||
Sbjct 1121 GTGTGGTAGAACAGTCATCAAATGCTGAGCAGGATGACAAACAAGAGCATGCAACACACC 1180
Query 779 TGGAAGAGGAGGAAAACATGCCAACAAGGCATATATCATCCTCTAGGTGGGCTGCTGGAA 838
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1181 TGGAAGAGGATGAAAACATGCCAACACGGCATATATCATCCTCTAGGTGGGCTGCTGGTA 1240
Query 839 ACAGTTCTCCAACTGATGAAGGTGAAATAGTAGAAGAAG-T-GGGAGCAAGTAAAAGGAG 896
| ||||||||||||||||||| ||||||||||||||||| | |||| ||| ||||||||
Sbjct 1241 ATAGTTCTCCAACTGATGAAGTTGAAATAGTAGAAGAAGTTGGGGA-AAAG-AAAAGGAG 1298
Query 897 GAAGAAACCATTTCCCGTGCAAGGGAGATTGCGCAATAAGTCTCAAACACCTGAGGTCGG 956
||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||
Sbjct 1299 GAAGAAACCATTTCCCGTGCAGGGGAGATTTCGCAATACCTCTCAAACACCTGAGGTCGG 1358
Query 957 GGAGTTAGTGAGGGAAGGTTATAGATCATCTGATTCCGACGAAAGGGGGCACCATTCTTT 1016
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1359 GGAGTTAGTGAGGGAAGGTTATAGATCATCTGATTCCGATGAAAGGGGGCACCATTCTTT 1418
Query 1017 GCCAGGAAGTAGAGATGATTTTGAGGAGAAG-GATGCTGTTAAGGGTGACAAGATGGAAA 1075
|| ||||| |||||||||||||||||| || |||||||||||| |||||||||||||||
Sbjct 1419 ACCGGGAAGCAGAGATGATTTTGAGGAG-AGAGATGCTGTTAAGAGTGACAAGATGGAAA 1477
Query 1076 TAGATGAGGAGGAACACAGAAGAGGAAACACTAG-TGACAGCCTTAGTGAAACAGATTCG 1134
|||||||||||||||||||||||| |||| || | ||||||||||||||||||||||||
Sbjct 1478 TAGATGAGGAGGAACACAGAAGAGAAAACTCT-GTTGACAGCCTTAGTGAAACAGATTCA 1536
Query 1135 GATGACGAATATGGT-CGGCATGAGACACCTGAACCTGCCAGTACTCCACTGAGAAGTAT 1193
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1537 GATGACGAATAT-GTACGGCATGAGACACCTGAACCTGCCAGTACTCCACTGAGAAGTAT 1595
Query 1194 AAACATGCTCCAGGGTTGTAGAAGTGTTGATGAATTTGAGAGATTAAATAAGATAGATGA 1253
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1596 AAACATGCTCCAGGGTTGTAGAAGTGTTGATGAATTTGAGAGGTTAAATAAGATCGATGA 1655
Query 1254 AGGTACTTATGGTGTGGTTTATAGAGCAAAGGATAAGAAGACAGGAGAAATTGTGGCATT 1313
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1656 AGGTACTTATGGTGTTGTTTATAGAGCAAAGGATAAGAAGACAGGCGAAATTGTGGCATT 1715
Query 1314 GAAGAAGGTGAAGATGGAAAAAGAAAGAGAAGGTTTTCCATTGACTTCTCTTAGGGAAAT 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1716 GAAGAAGGTGAAGATGGAAAAAGAAAGAGAAGGTTTTCCATTGACTTCTCTTAGGGAAAT 1775
Query 1374 TAACATACTTCTTTCTTTTCATCATCCATCAATAGTGGATGTTAAAGAGGTGGTCGTGGG 1433
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 TAACATCCTCCTTTCTTTTCATCATCCATCAATAGTGGATGTTAAAGAGGTGGTCGTGGG 1835
Query 1434 TAGTAGCCTTGATAGCATTTTTATGGTGATGGAATACATGGAACATGATCTTAAAGCATT 1493
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1836 TAGCAGCCTTGATAGCATATTCATGGTGATGGAATACATGGAACATGATCTTAAAGCATT 1895
Query 1494 GATGGAGACAATGAAGCAGCGTTTCAGTCAAAGTGAAGTTAAATGCTTAATGCTTCAACT 1553
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1896 GATGGAGACAATGAAGCAGCGTTTTAGTCAAAGTGAAGTTAAGTGCTTAATGCTTCAACT 1955
Query 1554 TTTAGAGGGCGTCAAGTATCTTCATGACAACTGGGTGCTTCATCGAGATTTGAAAACATC 1613
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1956 TTTAGAGGGCGTCAAGTATCTTCACGACAACTGGGTGCTTCATCGAGATTTGAAAACATC 2015
Query 1614 TAACCTGCTTTTAAACAATCGGGGTGAGTTGAAGATATGTGACTTTGGTTTGGCTCGGCA 1673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2016 TAACCTGCTTTTAAACAATCGGGGTGAGTTGAAGATATGTGACTTTGGTTTGGCTCGGCA 2075
Query 1674 ATATGGCAGCCCGCTGAAGCCTTATACTCATCTGGTTGTTACGCTTTGGTACAGGGCACC 1733
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2076 ATATGGCAGCCCGCTCAAGCCTTATACTCATCTGGTTGTTACGCTTTGGTACAGGGCACC 2135
Query 1734 TGAACTTCTCTTGGGAGCAAAACAATATTCTACAGCCATTGACATGTGGTCACTGGGCTG 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2136 TGAACTTCTCTTGGGAGCAAAACAATATTCTACAGCCATTGACATGTGGTCACTGGGCTG 2195
Query 1794 TATCATGGCAGAACTATTAATGAAGGCGCCATTGTTCAATGGGAAAACGGAGTTTGATCA 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2196 TATCATGGCAGAACTATTAATGAAGGCGCCATTGTTCAATGGGAAAACGGAGTTTGATCA 2255
Query 1854 ACTTGACAAGATTTTCAGAATTCTTGGTACTCCCAATGAATCCATTTGGCCTGGGTTCTC 1913
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2256 ACTTGACAAGATTTTCAGAATCCTTGGTACTCCCAATGAATCTATTTGGCCTGGGTTCTC 2315
Query 1914 CAAGCTGCCTGGAGTCAAGGTCAACTTTGTCAAGCATCAGTATAACCTATTACGTAAGAA 1973
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2316 TAAACTACCTGGAGTCAAGGTCAACTTTGTCAAGCATCAGTATAACCTATTACGTAAGAA 2375
Query 1974 ATTCCCAGCCACTTCATTCACTGGTGCACCAGTTCTGTCCGATGCTGGGTTTGACTTACT 2033
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2376 ATTCCCAGCCACTTCGTTCACTGGTGCACCAGTTCTGTCCGATGCTGGGTTTGACTTACT 2435
Query 2034 GAACAAGCTCCTAACGTACGATCCTGAGAGGAGAATAACTGTTGATGAAGCTCTAAAGCA 2093
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 2436 GAACAAGCTCCTAACGTACGATCCTGAAAGGAGAATAACTGTTAATGAAGCTCTAAAGCA 2495
Query 2094 TGATTGGTTCCGTGAAGTTCCTCTGCCAAAATCCAAAGATTTCATGCCTACTTTCCCTGC 2153
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 2496 TGATTGGTTCCGCGAAGTCCCTCTGCCAAAATCCAAAGATTTCATGCCTACTTTTCCTGC 2555
Query 2154 TCAACATGCCCAAGACAGGCGTGGGAGGAGAATGGTAAAGAGCCCTGATCCTCTGGAAGA 2213
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2556 TCAACATGCCCAAGACAGGCGTGGGAGGAGAATGGTAAAGAGCCCTGATCCTTTGGAAGA 2615
Query 2214 GCAACGCAGGAAGGAATTAACACAAACCGAACTTGGGTCTGGCGGTCTGTTTGGCTGA 2271
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2616 GCAACGTAGGAAGGAATTAACGCAAACCGAACTTGGGTCTGGCGGTCTGTTTGGCTGA 2673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112700223525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5