BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339024
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67820.1 | Symbols: | Protein phosphatase 2C family protein... 1327 0.0
> AT1G67820.1 | Symbols: | Protein phosphatase 2C family protein
| chr1:25429853-25431564 FORWARD LENGTH=1447
Length=1447
Score = 1327 bits (718), Expect = 0.0
Identities = 1018/1155 (88%), Gaps = 52/1155 (5%)
Strand=Plus/Plus
Query 147 AAAGGTCTCGCCTTTGAAGAGAAAGAGACCTCCCCATTTAGATATCCCTGA-C-C--T-- 200
||||||||||||||| ||||||||||||||| |||| || |||||||||| | | |
Sbjct 248 AAAGGTCTCGCCTTTAAAGAGAAAGAGACCTGCCCACCTAAATATCCCTGACCTCAATCC 307
Query 201 T---GAACCGACTTC-AACAGATTACTTCAGTGTCAGAGACTTTGCTCAGCAAAACGACG 256
| |||||| ||| ||| |||||||||||| ||| |||||||||||| ||||||| |
Sbjct 308 TCAACAACCGA-TTCGAACTGATTACTTCAGTTTCACAGACTTTGCTCACCAAAACGGCA 366
Query 257 CCGTAGTATGCTTCGGTGGTAATGGTTTCGGTGTTGTCTCCAGAAACGGAAAGAAGAAGT 316
||||| | |||||||||| |||||||| ||||| |||||||||||||| ||||||||||
Sbjct 367 CCGTA--A-GCTTCGGTGGCAATGGTTTTGGTGTCGTCTCCAGAAACGGTAAGAAGAAGT 423
Query 317 TTATGGAAGATACTCACAGAATTGTCCCTTGTTTGGTTGGTAGCTCCAAAAAGAGTTTCT 376
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 424 TTATGGAAGATACTCACAGAATTGTTCCTTGTTTGGTTGGTAACTCCAAAAAGAGTTTCT 483
Query 377 TTGGAGTTTATGATGGTCATGGAGGTGGGAAAGCTGCGGAATTTGTGGCTGAGAATTTGC 436
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 484 TTGGAGTTTATGATGGTCATGGAGGTGCTAAAGCTGCAGAATTTGTGGCTGAGAATTTGC 543
Query 437 ATAAACATGTTGTTGAGATGATGGAGAATTGTAAGGAGAAGGAGGAGAAAGTTGAAGCCT 496
| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 544 ACAAATATGTTGTTGAGATGATGGAGAATTGTAAGGGGAAGGAGGAGAAAGTTGAAGCCT 603
Query 497 TTAAAGCTGCTTATTTGAGGACTGATCGTGATTTCTTAGAAAAGGGTGTTGTGAGTGGTG 556
|||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 604 TTAAGGCTGCTTTTTTGAGGACTGATCGTGATTTCCTAGAAAAGGGTGTTGTGAGTGGTG 663
Query 557 CTTGCTGTGTTACTGCTTTGATACAAGATCAAGAGATGATTGTATCGAATTTGGGAGATT 616
||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||
Sbjct 664 CTTGCTGTGTTACTGCTGTGATACAAGATCAGGAGATGATTGTATCAAATTTGGGAGATT 723
Query 617 GTAGAGCTGTCCTGTGTCGAAG-AGGCGTTGCTGAAGCTCTTACTAATGATCACAAGGCA 675
||||||||||||||||| | || ||| |||||||| ||||||||| |||||||||| ||
Sbjct 724 GTAGAGCTGTCCTGTGTAG-AGCAGGTGTTGCTGAGGCTCTTACTGATGATCACAAACCA 782
Query 676 GGAAGGGATGATGAAAAGGAAAGAATTGAGAGTCAGGGAGGTTATGTTGATATTCACCGA 735
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |
Sbjct 783 GGAAGGGATGATGAAAAGGAAAGAATTGAGAGTCAGGGAGGTTATGTCGATAATCATCAA 842
Query 736 GGAGCTTGGCGAGTTCATGGAATACTCGCTGTTTCCAGAAGCATTGGAGATGCACACTTA 795
|| |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 843 GGGGCTTGGCGAGTTCAGGGAATACTTGCGGTTTCCAGAAGCATTGGAGATGCACACTTA 902
Query 796 AAGAAGTGGGTGGTTGTTGAACCTGATACAAGAATAGTTGAATTGGAACAAGATATGGAG 855
|||||||||||||||| ||||||||| || ||| || | ||| |||||||||||||||||
Sbjct 903 AAGAAGTGGGTGGTTGCTGAACCTGAGACGAGAGTACTAGAACTGGAACAAGATATGGAG 962
Query 856 TTTCTTGTCTTAGCTTCTGATGGACTTTGGGATGTGGTTAGTAATCAAGAAGCTGTTGAT 915
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 963 TTTCTTGTCTTAGCTTCTGATGGACTTTGGGATGTGGTTAGCAATCAAGAAGCTGTTTAT 1022
Query 916 ACCGTGCTGCATGTTCTAGCTCAGAGAAAGACACCTAGAGAAAGTGAGGAGGAGAACTTG 975
|||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1023 ACCGTGTTGCATGTTCTAGCTCAGAGAAAGACGCCTAAAGAAAGTGAGGAGGAGAACTTG 1082
Query 976 GTTCAGGGAGTTGTCAATGTGAGCCCATCTTCGAAACTTCGTCGGGTTTCGCTGGTCAAG 1035
|||||||| |||||||| ||||||||||||||||||||||||| | ||| |||||||||
Sbjct 1083 GTTCAGGGCTTTGTCAATATGAGCCCATCTTCGAAACTTCGTCGAGCTTCACTGGTCAAG 1142
Query 1036 TCATCAGTTCAATCTCCCAGATGTGCGAAATCCCCAAGTTACTACTACACCTCAGAGAAT 1095
|| || | | |||||||| ||||||| |||||||||||||| ||||||||||
Sbjct 1143 TC-TC----C---C----AGATGTGCTAAATCCCAAAGTTACTACTACAACTCAGAGAAT 1190
Query 1096 GAATCACCCTCACCCCACTGTGAAATCGGGAGTTCACCTTCAAATTCAATGAAGATCACA 1155
||||||||||||| | || ||||||| ||||||||||||||||| ||| || | |||
Sbjct 1191 GAATCACCCTCACTCAACCGTGAAATAGGGAGTTCACCTTCAAAGTCACCGAT-A--ACA 1247
Query 1156 CAGTTGAAGCGAATGAAGATGAAGTCCGAGTCTTCTTGGGCCAAGGAGGCTTGCAAAGAA 1215
| || || || | ||| |||| | ||||||| | ||||||||||||
Sbjct 1248 C--------CG--TG--GA--A-GTC----TCTT-T-GGGCCAAAGCGGCTTGCAAAGAG 1286
Query 1216 CTCGCGAACCTGGCCGTAAAAAGAGGTAGTATGGATGATATAACAGTGGTGGTTATAGAT 1275
|| ||||||||||| | ||||||||| |||||||||||||| ||||||||| | || |||
Sbjct 1287 CTTGCGAACCTGGCTGCAAAAAGAGGCAGTATGGATGATATCACAGTGGTGATAATTGAT 1346
Query 1276 CTCAACCACTACAAA 1290
|||||||| ||||||
Sbjct 1347 CTCAACCATTACAAA 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5