BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339044
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68100.1 | Symbols: IAR1 | ZIP metal ion transporter family ... 1940 0.0
> AT1G68100.1 | Symbols: IAR1 | ZIP metal ion transporter family
| chr1:25521204-25524175 FORWARD LENGTH=1674
Length=1674
Score = 1940 bits (1050), Expect = 0.0
Identities = 1153/1204 (96%), Gaps = 2/1204 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCTGCCGGAAGAGCTTGCTGAGGAGGAGGATATGAGGTTGTGTGGGTTTGGGCCT 60
|||||| ||||||| ||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 329 ATGAAGTTGCCGGAGGAGCTTGCTGAAGAGGAGGATATGAGATTATGTGGGTTTGGGCCT 388
Query 61 TGTCTTCATGATCATGATCACGAATCAAGTTCTACTCTTACCGGGTTTGCTCTGTGGCTT 120
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 389 TGTCTTCATGATCACGATCACGAATCAAGTTCCACTCTTACGGGGTTTGCTCTGTGGCTT 448
Query 121 AATGCATTGGGATGCTCTCTTTTGGTTAGCTTAGCCTCACTCATCTGTCTGGTTTTGCTT 180
||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||
Sbjct 449 AATGCATTGGGATGCTCTCTTTTAGTTAGCTTGGCCTCACTCATCTGCCTTGTTTTGCTT 508
Query 181 CCCATTATGTTTGTTCAAGGGAAGCCATCAAAAGGGTTCGTTGATTCTTTGGCTTTGTTT 240
||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 509 CCCATTATGTTTGTTCAAGGGAAGCCATCAAAATGGTTCGTTGATTCTTTGGCTCTCTTT 568
Query 241 GGGGCAGGAGCTATGTTGGGGGATGCTTTTCTTCACCAATTGCCCCATGCTTTTGGTGGT 300
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 569 GGGGCAGGAGCTATGTTGGGAGATGCTTTTCTTCACCAACTGCCCCATGCTTTTGGTGGT 628
Query 301 GGTCACTCTCACTCTAATGATCACCATGAGAACCATGACCATCATGATCATTCTCATTCG 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 GGCCACTCTCACTCTAATGATCACCATGAGAACCATGACCATCATGATCATTCTCATTCG 688
Query 361 GATTCACCTTCACACTCACATTCTATACAAGATTTGTCTGTTGGATTATCTGTTCTCGCT 420
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 689 GATTCGCCTTCACACTCACATTCTATACAAGATTTGTCTGTTGGATTGTCTGTTCTTGCT 748
Query 421 GGGATTGTGGTCTTCCTTCTTGTGGAGAAGTTGGTGCGGTATGTCGAAGAAAACTCGTCT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 749 GGGATTGTGGTCTTCCTTCTTGTGGAGAAGTTGGTGCGGTATGTCGAAGAAAACTCATCT 808
Query 481 GGGTCCAATACTTGGGGTCATCATCACCACCACCACCATGCAGGCAGTAAGAAACTGAAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 GGGTCCAATACTTGGGGTCATCATCACCACCACCACCATGCAGGCAGTAAGAAACTGAAG 868
Query 541 GATGAAGACGATCAGAACAACTTGGACCAAAAATCTTCTTCTGATGAAATTGTAAATTCA 600
||||||| |||||| ||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 869 GATGAAGGCGATCATAACAACTTGGACCAACAATCTTCTTCTGATGCAATTGTAAATTCA 928
Query 601 TCAGAGAAAGTCTCTAGCGGCTCTACAGATGGATCTCTCCGTAAGAGAAAGAGTTCTGCT 660
||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 929 TCAGAGAAAGTCTCTGGCGGCTCTACAGATAAATCTCTCCGTAAGAGAAAGACTTCTGCT 988
Query 661 GGTGATGCTGCTGATAAATCAGATTCAGGAACAGAAATTACTTCTC-ATGGAAAATCGGA 719
|||| ||| |||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 989 AGTGACGCTACTGATAAATCAGATTCAGGAACAGAAATTACTTC-CGATGGAAAATCGGA 1047
Query 720 CAAACCAGAACAGGTGGAGACGCATTCTTCAAGCCTAGTCTTTGGTTACCTCAACTTGTT 779
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1048 CAAACCAGAACAGGTGGAGACGCGTTCTTCGAGCCTAGTCTTTGGTTACCTCAACTTGTT 1107
Query 780 CTCTGATGGTGTTCACAATTTTACTGATGGAATGGCATTAGGAAGTGCGTTTCTCATCTA 839
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1108 CTCTGATGGTGTTCACAATTTCACTGATGGAATGGCATTAGGAAGTGCGTTTCTCATCTA 1167
Query 840 TGGATCAGTTGGTGGTTGGTCAAGAACTATGTTTTTACTCGCCCACGAGCTTCCTCAAGA 899
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1168 TGGATCAGTTGGTGGTTGGTCAAGAACTATGTTTTTACTTGCCCACGAGCTTCCCCAAGA 1227
Query 900 GATAGGTGATTTTGGGATCCTAGTGAGGTCAGGCTTCACTGTAACAAAAGCACTCTTCTT 959
|||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||
Sbjct 1228 GATAGGTGATTTTGGGATTCTAGTAAGATCAGGCTTCACAGTAACAAAAGCACTCTTCTT 1287
Query 960 CAACTTCCTCTCTGCACTCGCCGCACTTGCAGGAACTGCATTGGTCTTGGTCTGGGGAAA 1019
|||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||
Sbjct 1288 CAACTTCCTCTCTGCACTCGTCGCACTTGCCGGAACTGCATTGGTTTTGGTCTGGGGAAA 1347
Query 1020 TGAACCAGGACAATCATCGTTGATCGAGGGATTCACAGCGGGAGGATTCATATACATAGC 1079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1348 TGAACCAGGACAATCATCGTTGATTGAGGGATTCACAGCGGGAGGATTCATATACATAGC 1407
Query 1080 TGTTGCTGGTGTTCTTGCAGAAATGAACAACTCCGGAAAATCGACACTTAAAAACAGTGC 1139
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1408 TGTTGCTGGAGTTCTTGCAGAAATGAACAACTCGGGAAAATCAACACTTAAAAACAGTGC 1467
Query 1140 CTGCCATTTGATATCTTTGATTCTTGGCATGAGTGTTGCTCTTTGCATCTCTCTTATAGA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 CTGCCATTTGATATCTTTGATTCTTGGCATGAGTGTTGCTCTTTGCATCTCTCTTATAGA 1527
Query 1200 ATGA 1203
||||
Sbjct 1528 ATGA 1531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5