BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339050
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68030.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 665 0.0
> AT1G68030.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr1:25500378-25501751 REVERSE LENGTH=1050
Length=1050
Score = 665 bits (360), Expect = 0.0
Identities = 467/516 (91%), Gaps = 17/516 (3%)
Strand=Plus/Plus
Query 1 ATGGAGCCTCTGAAGTCAGACAGTTTATGTGATCGCTTTGTGACTGGGAATTTAGACCTT 60
|||||||||| ||| ||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct 106 ATGGAGCCTCCGAATTCAAACAGTGTCTGTGATCGCTTTGTGACTGGGAATTTAGACCTT 165
Query 61 GATAACTGGATTTGGGTTATTGAGTACTTTGCGAAATTCAAAACTGAGCTTTGGATGTTA 120
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 166 GATAACTGGATTTGGATTATTGAGTACTTTGCCAAATTCAAAACTGAGCTTTGGATGTTA 225
Query 121 AATGATGTGTTTGAAATGGCTCCTAAGCTTCCAGATTATTTGGGTGAATATACCAATGAG 180
|||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 226 AATGATGTCTTTGAATTGGCTCCTAAGCTTCCAGATTATTTGGGTGAATATACAAATGAG 285
Query 181 ATGGTAGCTTTCAGATGCTTAGCTTCTTTGTTTGCTTCTGATCTTGTTTCTG--A--A-- 234
|||||||||||||||||| ||||||||||||||| |||| || ||||||||| | |
Sbjct 286 ATGGTAGCTTTCAGATGCCTAGCTTCTTTGTTTGATTCTCATGTTGTTTCTGTTACTACT 345
Query 235 GCT--GACT-C-A----AA-GATCGAGTTTGATTCGTCTGAGAGCTGTGAATATGTACTT 285
|| ||| | | || ||||||||||||||| |||||||||||||||||||||||
Sbjct 346 ACTACTACTACTACCTCAATGATCGAGTTTGATTCCTCTGAGAGCTGTGAATATGTACTC 405
Query 286 CAATGTATCTTGGATGAGATACCTTTATCGGAACTGAAACCGGGTGCACCGGGGTTATCG 345
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 406 CAATGTATCTTAGATGAGATACCGTTATCGGAACTGAAACCGGGTGCACCGGGTTTAACG 465
Query 346 AAGTGGAATGTTCAACCCTTTATCAAA-AGCAAGCTTCTTTGTCTACCAAAATGTGCTTT 404
||||||||| ||||||| ||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 466 AAGTGGAATCTTCAACCTTTTATCAAACA-CAAGCTTCTTTCTCTACCAAAATGTGCTTT 524
Query 405 GGAACTGATGATTGAACCATCTTCCTCTGAGAATGATACTGAAATGTCTCCTTGTAATGA 464
||||||||||||||||||||| || | ||||||||||||| || |||||||||||| |||
Sbjct 525 GGAACTGATGATTGAACCATCATCATGTGAGAATGATACTCAAGTGTCTCCTTGTAGTGA 584
Query 465 GGAAGAGACTCTGAGAAGTGATGGCAAAGAGACTGA 500
|||||||||||||||||||||||||||||||| |||
Sbjct 585 GGAAGAGACTCTGAGAAGTGATGGCAAAGAGAATGA 620
Score = 449 bits (243), Expect = 2e-125
Identities = 319/354 (90%), Gaps = 11/354 (3%)
Strand=Plus/Plus
Query 566 ATGAGTTGCTCGAAAGAAGAAACGAGGGATATCGATATG--A---AAAA-GAT-G--GTC 616
||||||||||||| |||||||| | |||| |||||||| | |||| ||| | |||
Sbjct 698 ATGAGTTGCTCGATAGAAGAAATGCCGGATTTCGATATGAAAGCGAAAATGATGGTAGTC 757
Query 617 ATTTGTCAAGTCTTGCAGAGAAAATATACAGATGTGTTAAATGCAAAGAAAGTGGGAAGC 676
|||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 758 ATTTGTCAAGTCCTGTAGAGAAAATATACAGATGTGTTAACTGCAAAGAAAGTGGGAAGC 817
Query 677 TGTTGTTTTGCTCTAGTCATGGCTGCCAAGTCCTGGTTCATCAGAAATGTTTGGATTCAC 736
||||||||||||||||| ||||||| ||||| ||||||||||||| |||||||||||||
Sbjct 818 TGTTGTTTTGCTCTAGTGATGGCTGTGAAGTCATGGTTCATCAGAAGTGTTTGGATTCAC 877
Query 737 CACCTTCTTACGATGATGCTGGAAATTTTTACTGCTCTCTCTGTGCTATT-ACTTGTGCT 795
||||||||||| ||||||||||| | ||||||||||||||||| ||| || || ||| ||
Sbjct 878 CACCTTCTTACCATGATGCTGGAGACTTTTACTGCTCTCTCTGCGCT-TTAACCTGTCCT 936
Query 796 TCAGCTGAATATGTTCAATCTCAAGATGAAGTGGCTAAAGCTAAGAAGAAACTAGTTTCG 855
||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||
Sbjct 937 TCAGCTGAATATGTTCAATTTCAAGATGAAGTGGCTAAAGCAAAGAGGAAATTAGTTTCG 996
Query 856 TTTCTTAGACTAATGTCAGAGGTTAACAAGAAGAAATCTATTGAGGGAACCTGA 909
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 997 TTTCTTAGACTAATGTCAGAGGTTAACAAGAAGAAATCTATTGAAGGAACCTGA 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5