BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339072
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68320.1 | Symbols: MYB62, AtMYB62, BW62B, BW62C | myb domai... 1293 0.0
AT1G25340.1 | Symbols: MYB116, AtMYB116 | myb domain protein 11... 411 8e-114
> AT1G68320.1 | Symbols: MYB62, AtMYB62, BW62B, BW62C | myb domain
protein 62 | chr1:25603842-25605096 FORWARD LENGTH=1073
Length=1073
Score = 1293 bits (700), Expect = 0.0
Identities = 812/865 (94%), Gaps = 11/865 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAATTCAATGAAGAAGAAG-A-A-CTTCACTAAAGAAAGTGAAGAGGCAGAGCTG 57
||||||||||| |||||||||||| | | ||| | |||||||||||||| | ||| ||
Sbjct 1 ATGGAAAATTCGATGAAGAAGAAGAAGAGCTT--C-AAAGAAAGTGAAGATGAAGAACTA 57
Query 58 AGAAGAGGGCCTTGGACTTTGGAGGAAGACACTCTTCTCACTAATTACATTCTCCATAAC 117
|||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct 58 AGAAGAGGGCCTTGGACTTTGGAGGAAGACACACTTCTCACAAATTACATCCTCCATAAC 117
Query 118 GGTGAAGGTCGTTGGAATTACGTCGCTAAATGTGCTGGGCTAAAGAGAACTGGAAAAAGT 177
||||| |||||||||||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 118 GGTGAGGGTCGTTGGAATCACGTCGCCAAATGTGCTGGGCTAAAGAGAACTGGGAAAAGT 177
Query 178 TGTAGATTGAGATGGTTAAATTACTTGAAACCCGACATAAGACGAGGGAATCTAACTCCT 237
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 178 TGTAGATTGAGATGGTTGAATTACTTGAAACCCGACATAAGACGAGGGAATCTTACTCCT 237
Query 238 CAAGAACAACTTTTAATCCTTGAGCTTCACTCTAAATGGGGTAATAGGTGGTCCAAGATT 297
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CAAGAACAGCTTTTGATCCTTGAGCTTCACTCTAAATGGGGTAATAGGTGGTCCAAGATT 297
Query 298 GCACAGTACTTACCAGGAAGAACTGATAACGAGATCAAGAACTATTGGAGAACAAGAGTT 357
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 298 GCACAGTACTTGCCAGGAAGAACGGATAACGAGATCAAGAACTATTGGAGAACAAGAGTT 357
Query 358 CAAAAACAAGCTCGACAACTCAACATCGAATCTAACAGCGACAAGTTCTTTGACGCTGTC 417
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CAAAAACAAGCTCGTCAACTCAACATCGAATCTAACAGCGACAAGTTCTTTGACGCTGTT 417
Query 418 CGTAGTTTTTGGGTCCCTAGATTGATCGAGAAGATGGAACAAAACTCATCCACAACTACT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 418 CGTAGTTTTTGGGTCCCTAGATTGATCGAGAAGATGGAACAAAACTCATCCACTACTACT 477
Query 478 ACTTATTGTTGTCCCC--AA-AACAACAACAACTCTCTTAATCTTCCTTCTCAATCTCAC 534
|||||||||||||||| || |||||||||||||||||| |||||||||||||||||||
Sbjct 478 ACTTATTGTTGTCCCCAAAACAACAACAACAACTCTCTTCTTCTTCCTTCTCAATCTCAC 537
Query 535 GACTCCATGAA-TATGCAAAAAGATATAGATTACTCCGGTTTCAGCAACATAGACGGTTC 593
|||| | | || |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 538 GACT-CTTTAAGTATGCAAAAAGATATAGATTACTCGGGTTTCAGCAACATAGACGGTTC 596
Query 594 TTCTTCAACTTCTACTTTCATGTCTCATCTAACGACAGTTCCACACTCTATGGATCAAAA 653
||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 597 TTCTTCAACTTCTACTTGCATGTCTCATCTAACAACAGTTCCACACTTTATGGATCAAAG 656
Query 654 CAACACCAATATCATCGATGTCTCGATGTGTTTCCATGAAGGTAATGTTCAAGAATTGGG 713
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 657 CAACACCAATATCATCGATGGCTCGATGTGTTTCCATGAAGGCAATGTTCAAGAATTCGG 716
Query 714 AGGTTATGTCCCTGGCATGGAGGATTACATAGTTAACTCGGACATCTCAATGGAATGCCA 773
||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 717 AGGATATGTTCCTGGCATGGAGGATTACATGGTAAACTCGGACATCTCAATGGAATGTCA 776
Query 774 CATGGCAGATGATTATTCAGCGTACGAGGATGTTACACAAGATCCCATGTGGAATGTGGA 833
| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CGTGGCGGATGGTTATTCAGCGTACGAGGATGTTACACAAGATCCCATGTGGAATGTGGA 836
Query 834 TGACATTTGGCAGTTTAGGGACTAA 858
||||||||||||||||||||| |||
Sbjct 837 TGACATTTGGCAGTTTAGGGAGTAA 861
> AT1G25340.1 | Symbols: MYB116, AtMYB116 | myb domain protein
116 | chr1:8885081-8886398 FORWARD LENGTH=1108
Length=1108
Score = 411 bits (222), Expect = 8e-114
Identities = 376/448 (84%), Gaps = 19/448 (4%)
Strand=Plus/Plus
Query 37 GAAAGTGAAGA--G-GCAGAGCTGA-GAAGAGGGCCTTGGACTTTGGAGGAAGACACTCT 92
|||| |||||| | ||||||| || ||| |||||||||||| | ||||||||||||||
Sbjct 161 GAAA-TGAAGAGGGTGCAGAGCAGAGGAA-AGGGCCTTGGACACTCGAGGAAGACACTCT 218
Query 93 TCTCACTAATTACA-TTCTCCATAACGGTGAAGGTCGTTGGAAT-TACGTCGCTAAATGT 150
|||||| ||||||| ||| ||||||||||||||| || |||||| | | ||||||||| |
Sbjct 219 TCTCACCAATTACATTTC-CCATAACGGTGAAGGCCGATGGAATCTGC-TCGCTAAATCT 276
Query 151 GCTGGGCTAAAGAGAACTGGAAAAAGTTGTAGATTGAGATGGTTAAATTA-CTTGAAACC 209
|||||||||||||| | |||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 277 TCTGGGCTAAAGAGAGCAGGAAAAAGTTGTAGATTGAGATGGTTGAATTACCTT-AAACC 335
Query 210 CGACAT-AAGACGAGGGAATCTAACTCCTCAAGAACAACTTTTAATCCTTGAGCTTCACT 268
|||||| ||| || |||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 336 CGACATAAAG-CGTGGGAATCTCACTCCTCAAGAACAACTTTTAATCCTTGAGCTCCATT 394
Query 269 CTAAATGGGGTAATAGGTGGTCCAAGATTGC-ACAGTACTTACCAGGAAGAACTGATAAC 327
|||||||||||||||||||||| || ||| | | |||| |||||||||||||| || |||
Sbjct 395 CTAAATGGGGTAATAGGTGGTCAAAAATTTCGA-AGTATTTACCAGGAAGAACAGACAAC 453
Query 328 GAGATCAAGAACTATTGGAGAACAAGAGTTCAAAAACAAGCTCGACAACTCAACATCGAA 387
|| ||||| ||||| |||||||| ||||| || |||||||| || || |||||||| ||
Sbjct 454 GATATCAAAAACTACTGGAGAACTAGAGTCCAGAAACAAGCACGCCAGCTCAACATAGAT 513
Query 388 TCTAACAGCGACAAGTTCTTTGACGCTGTCCGTAGTTTTTGGGTCCCTAGATTGATCGA- 446
|| || ||| |||||||| | || | ||| ||||| |||||| | || ||| ||||| |
Sbjct 514 TCCAATAGCCACAAGTTCATAGAAGTTGTTCGTAGCTTTTGGTTTCCAAGACTGATCAAC 573
Query 447 GAAGATGGAACAAAACTCATCCAC-AAC 473
|| ||| || | ||||||| ||| |||
Sbjct 574 GA-GATTAAAGACAACTCATACACCAAC 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5