BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339091
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68470.1 | Symbols: | Exostosin family protein | chr1:25676... 2050 0.0
> AT1G68470.1 | Symbols: | Exostosin family protein | chr1:25676395-25678288
REVERSE LENGTH=1539
Length=1539
Score = 2050 bits (1110), Expect = 0.0
Identities = 1293/1380 (94%), Gaps = 18/1380 (1%)
Strand=Plus/Plus
Query 1 ATGAGTTACACTAAGAGGCAAGTCAAGATCAATCACTGGCCGGAGAAGAAAGACAAAGAG 60
|||| || || ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 22 ATGACTTTCAATAAGAGGCAAGTCAAGATCAATCACTGGCCGGAGAAGAACGACAAAGAG 81
Query 61 AAGGAGAAATAC-CCAAAAAACAGAGAAA-CGCTAAAATTGATAATTCTCACTCTGCTTC 118
||| |||||||| || ||||||||||||| || | || |||| | |||||||||| ||||
Sbjct 82 AAGCAGAAATACTCC-AAAAACAGAGAAACCG-TCAAGTTGACACTTCTCACTCTTCTTC 139
Query 119 TCTCCTT-CTCAATTTGTTTCCTCTTCCTAATTCTCCATTTCCCCTTCACAACAGAATTC 177
|| | || ||||||||||||||||||||||| |||| ||||||||||||||| |||||||
Sbjct 140 TC-CTTTGCTCAATTTGTTTCCTCTTCCTAACTCTCAATTTCCCCTTCACAATAGAATTC 198
Query 178 ACAGCCTCAATCCCCCGCAAATGCTACCACAATTTCACCGTCTACGTCTACGATCTTCCC 237
|||||||||||||| |||| |||| |||||||||||||||||||||| |||||||| |||
Sbjct 199 ACAGCCTCAATCCCTCGCACATGCGACCACAATTTCACCGTCTACGTGTACGATCTCCCC 258
Query 238 AAAGAGTTCAACATCGGTCTCCTCCAAAATTGCCGACACTTAAACATCTACACCAACATG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 AAAGAGTTCAACATCGGTCTCCTCCAAAATTGCCGACACTTAAACATCTACACCAACATG 318
Query 298 TGTCCTCACGTAGCCAACAATGGCCTCGGTCAGCCTCTTTACCGCAGCGGACGAACGTCG 357
|| |||||||| |||||||||||||| || ||||||||| | | | |||||||||| |||
Sbjct 319 TGCCCTCACGTGGCCAACAATGGCCTTGGACAGCCTCTTCA-C-C-GCGGACGAACTTCG 375
Query 358 TGGTTCGCTACACACCAGTTCATAGCCGAGATGATCTTCCACGCACGTGT-AAAGAACCA 416
|||||| |||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 376 TGGTTCTCTACGCACCAGTTCATAGCCGAGATGATCTTCCACGCACGTGTCGAA-AACCA 434
Query 417 CCCGTGCCGCACGTATGAGCCAAACAATGCCGACATCTTCTACGTCCCTTTCTACGGTGG 476
|| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 435 TCCATGCCGCACGTATGAGCCAGACACTGCCGACATCTTCTACGTCCCTTTCTACGGTGG 494
Query 477 CCTCTACGCTTCAAGCGTCTTCCGAGAGCAAAACTTAACCAAGCGCGACGAGCTAGCCGT 536
||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||
Sbjct 495 TCTCTACGCTTCAAGCGTGTTCCGAGAGCAAAACCTGACCAAGCGCGACGAGCTAGCTGT 554
Query 537 CAGATTAGTCAACTACATTAGTGGCCAACGATGGTGGAAGAGAAGCAACGGTCGTGATCA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CAGATTAGTCAACTACATTAGTGGCCAACGATGGTGGAAGAGAAGCAACGGTCGTGATCA 614
Query 597 TTTCTTGGCCATAGGGAGGACAGCTTGGGATTTCATGCGCTCCTCCGACACTGATGACTT 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 615 TTTCTTGGCCATAGGGAGGACAGCTTGGGATTTCATGCGCTCCTCCGACACTGA---CTT 671
Query 657 TGGAGCTAACATGCTCATGCAAATGCCACGTGTCATGAACATGTCGGTGCTGACCGTAGA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 672 TGGAGCTAACATGCTCATGCAAATGCCACGTGTCATGAACATGTCGGTGCTGACCGTGGA 731
Query 717 GAGGCAACCTTGGAAAGGTGACAATCACTTTGGTATACCGTATCCTTCTTATTTTCATCC 776
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 GAGGCAGCCTTGGAATGGTGACAATCACTTTGGTATACCGTATCCTTCTTATTTTCATCC 791
Query 777 GTACACGTCAGCAGAAATGGTGACGTGGCAAGACAAGATGAGAAGA-GTCGAGAGACCAA 835
|||||||||||||||||||||||||||||| |||||||||| || | |||||||||||||
Sbjct 792 GTACACGTCAGCAGAAATGGTGACGTGGCAGGACAAGATGAAAA-ATGTCGAGAGACCAA 850
Query 836 ACTTGTTTAGTTTTGTCGGTGGGCCGAGAAAGGGCTTGGAGAAAGCAGCCATTAGAGACA 895
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 851 ACTTGTTTAGTTTTGTCGGTGGGCCGAGAAAGGGCTTGGAGAAAGCTGCCATTAGAGACG 910
Query 896 AGCTGATCAAGCAATGCGCTGAGTCGAGCCATTGTGAGCTTCTCAAGTGTGAAAATGGAG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 AGCTGATCAAGCAATGCGCTGAGTCGAGCCATTGTGAGCTTCTCAAGTGTGAAAATGGAG 970
Query 956 GGTCCAGGTGTCACGACCCGATGACGGTATTAGGAGTGATGGCTAGGTCACGGTTTTGCC 1015
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 971 GGTCCAGGTGTCACAACCCAATGACGGTATTAGGAGTGATGGCTAGGTCACGGTTTTGCC 1030
Query 1016 TACAAGCACCGGGGGACTCATTTACGCGCAGGTCAACATTCGATGCGATGTTAGCCGGCT 1075
|||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |
Sbjct 1031 TACAAGCACCGGGGGACTCATTCACGCGGAGATCAACATTCGATGCGATGTTAGCCGGGT 1090
Query 1076 GCATACCGGTCtttttttCACCACATACCATGTATACACAGTACTTGTGGTATCTTCCGG 1135
|||||||||||||||||||||| || || ||||||||||||||| |||||||||||||||
Sbjct 1091 GCATACCGGTCTTTTTTTCACCCCACACTATGTATACACAGTACATGTGGTATCTTCCGG 1150
Query 1136 GTGATAAAAGAAGTTACTCAGTGTTCATGGACGAAAAGAACAACACTCATATAGAACAAG 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 ACGATAAAAGAAGTTACTCAGTGTTCATGGACGAAAAGAACAACACTCATATAGAACAAG 1210
Query 1196 AGCTCTTGAGGATCTCAGAGAGCGAAGTGGTTCAAATGAGGGAAACAGTCATTGATTTGA 1255
|||||||||||||||| |||| |||||||||||||||||| |||| |||||| |||||||
Sbjct 1211 AGCTCTTGAGGATCTCGGAGAACGAAGTGGTTCAAATGAGAGAAATAGTCATCGATTTGA 1270
Query 1256 TCCCAAG-CGTAACTTATGCGCACCCAAACGCCACTAACTATGATTTACCAGATGCGGTT 1314
|||| || | | |||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1271 TCCCGAGAC-TGACTTATGCGCACCCAAACTCTACTAACTATGATTTACCAGATGCGGTT 1329
Query 1315 GATGTAGCATTAGAGGCACTAGCTAAGGAAGCAAGAGACAAGGTTGTGGTTTCATTGTAA 1374
||| |||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1330 GATATAGCGTTAGAGGCACTAGCTAAGCAAGCAAGAGACAATGTTGTGGTTTCATTGTAA 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67670334660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5