BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg339096

Length=1329
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31970.1 | Symbols: RAD50, ATRAD50 | DNA repair-recombinatio...   313    3e-84
  AT2G35630.1 | Symbols: MOR1, GEM1 | ARM repeat superfamily prot...  86.1    8e-16


> AT2G31970.1 | Symbols: RAD50, ATRAD50 | DNA repair-recombination 
protein (RAD50) | chr2:13600491-13609069 FORWARD LENGTH=4371
Length=4371

 Score =  313 bits (169),  Expect = 3e-84
 Identities = 197/211 (93%), Gaps = 0/211 (0%)
 Strand=Plus/Plus

Query  131   ATGTATTAGAAATCTCTGCCCAGACAAAAGCTGGCAAAGACTCAATTGAAGCACTGGTGC  190
             ||||||||| ||||||||| |||| |||||||| ||||||||| ||||||||||||||||
Sbjct  2514  ATGTATTAGGAATCTCTGCACAGATAAAAGCTGACAAAGACTCGATTGAAGCACTGGTGC  2573

Query  191   AGCCCCTGGAAAATGCTGGCAGGATCTTTCAGGAAATCGTATCCTACCAAAAGCAAATTG  250
             ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  2574  AGCCCCTCGAAAATGCTGACAGGATCTTTCAGGAAATCGTATCCTACCAAAAGCAAATTG  2633

Query  251   AAGATCTTGAATATAAGCTCGATTTCAGGGGTCTTTGGGCTAAAACTATGGAAGAAATCC  310
             ||||||||||||||||||| ||||| ||||||||| ||| ||||||||||||||||||||
Sbjct  2634  AAGATCTTGAATATAAGCTTGATTTTAGGGGTCTTGGGGTTAAAACTATGGAAGAAATCC  2693

Query  311   AATCAGAACTAAGTACCCTCCATAGCAGCAA  341
             |||||||| |||||| |||||| ||||||||
Sbjct  2694  AATCAGAATTAAGTAGCCTCCAAAGCAGCAA  2724


> AT2G35630.1 | Symbols: MOR1, GEM1 | ARM repeat superfamily protein 
| chr2:14966678-14980606 FORWARD LENGTH=6332
Length=6332

 Score = 86.1 bits (46),  Expect = 8e-16
 Identities = 61/68 (90%), Gaps = 2/68 (3%)
 Strand=Plus/Plus

Query  1020  AGTGTTAAAAGGTGTTTCAAAGATTTCAAAATCAACTTCTAATGGTAAACTGAA-GCAAG  1078
             ||||| |||||||||| ||||||||||||||||||||||||||||||  || || |||||
Sbjct  3405  AGTGTCAAAAGGTGTTACAAAGATTTCAAAATCAACTTCTAATGGTAC-CTTAAAGCAAG  3463

Query  1079  GAAATAGA  1086
             |||| |||
Sbjct  3464  GAAACAGA  3471



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 65411310135


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5