BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339115
Length=3408
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68720.1 | Symbols: TADA, ATTADA | tRNA arginine adenosine d... 3620 0.0
> AT1G68720.1 | Symbols: TADA, ATTADA | tRNA arginine adenosine
deaminase | chr1:25804418-25808982 FORWARD LENGTH=4215
Length=4215
Score = 3620 bits (1960), Expect = 0.0
Identities = 2269/2415 (94%), Gaps = 34/2415 (1%)
Strand=Plus/Plus
Query 319 GAAAGATATGATTGTGAACATTGTGGGAGGATAAAGAAAAGTTATGAGTTGGAGAGTGAA 378
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 772 GAAAGATATGATTGTGAACATTGTGGGAGGAGAAAGAAAAGTTCTGAGTTGGAGAGTGAA 831
Query 379 TCTCGGCGTGGTTCTAAATTGGTTACTGGTGAG-----T------A--TAT--------T 417
||||||||||||||||||||||||||||||||| | | ||| |
Sbjct 832 TCTCGGCGTGGTTCTAAATTGGTTACTGGTGAGTATATTGGAAAAAGTTATAGGGGGGAT 891
Query 418 GAAGAAAGAGTAGTTCGGCCTAGAAGAACG-AAGAGTTCGAGTTGTTCGTCGTATTATTC 476
|||||||||| ||||||||| ||||| | | ||||||||||||||||| |||||||||||
Sbjct 892 GAAGAAAGAGAAGTTCGGCCAAGAAGGA-GAAAGAGTTCGAGTTGTTCATCGTATTATTC 950
Query 477 CCTTGCTTCTTCAGGGGAGTTTGAGAGTGATACTGAAGATCAGGAGGAGGATGTGGA-AA 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 951 CCTTGCTTCTTCAGGGGAGTTTGAGAGTGATACTGAAGATCAGGAGGAGGATGTAGAGAT 1010
Query 536 TTAGTCGTGAAAAGGTGAGAAGTTCAAAGAAGAAAATTGTTGACCAGTCAGCCAAAGGAT 595
||| ||| ||||| |||||||||||| ||||||| ||||||| |||||||||||| |||
Sbjct 1011 TTA-TCGCGAAAACGTGAGAAGTTCAGAGAAGAAGGTTGTTGATCAGTCAGCCAAAAGAT 1069
Query 596 TGAAATCTAGAAAGGAAGCCTCTCTGATGCATTTGAGGaaaaaaaGAGATGAGAGCTCTA 655
|||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 1070 TGAAATCTAGAAAGGAAGCCTCTCAGATGCATTCAAGGAAAAAGAGAGATGAGAGCTCTA 1129
Query 656 ATGGAGTGGATTCAAGGTATCAGAAGCAGGTATTTGAGGAAGGGGAAAATTCAAATCAGG 715
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1130 CTGGAGTGGATTCAAGGTATCAGAAGCAGATTTTTGAGGAAGGGGAAAATTCAAATCAGG 1189
Query 716 CAGTGACTTTGAACCAGAGAAGAAGAAAGAAGTTTAGTCAAACTGGTAATAGAGTGTCTG 775
||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||
Sbjct 1190 CAGTGACTTTGAACCAGCGAAGAAGAAAAAAGTTTAGTCAAACTGAAAATAGAGTGTCTG 1249
Query 776 AATCGACGGGAAGCTATGAAGAAGATATGGAAATTCATGAGATCCATGTCAACGATGCAG 835
|||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1250 AATCTACGGGAAATTATGAAGAAGATATGGAAATTCATGAGGTCCATGTCAACGATGCAG 1309
Query 836 AGACTAGTTCTCAAAATCAAAAGCTCATTGGTGAAAGGGAGGACTATAGAGTCCACTCAA 895
|||| ||||| ||||||||||||||| || ||||||||||||||||||||| |||||||
Sbjct 1310 AGACCAGTTCCCAAAATCAAAAGCTCTTTAATGAAAGGGAGGACTATAGAGTTCACTCAA 1369
Query 896 TTCGTAATGATTCTGGAAACGAAAACATTGAGAGTTCTCAGGAGCAATTGAAGGAAAGAT 955
||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 1370 TTCGTAATGATTCTGGAAACGAAAACATTGAGAGTTCTCAGCATCAATTGAAAGAAAGAT 1429
Query 956 CGGAGACTCGTTATAGCAGTGAGGATAGAGTATCTGAATTGCGAAGAAGAACCAAATATA 1015
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1430 TGGAGACTCGTTATAGCAGTGAGGATAGAGTATCTGAAATGCGAAGAAGAACCAAATATA 1489
Query 1016 GCAGTAGCCAGGAGGAAGGTATAAATGTGCTCCAAAATTTTCCAGAGGTGACAAATAATC 1075
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1490 GCAGTAGCCAGGAGGAAGGTATAAATGTGCTCCAAAATTTTCCGGAGGTGACAAATAATC 1549
Query 1076 AGCAACATCTAGTGGAAGAAAGGATATCTAAGCAAGCTGGTAGGAGAAGGACTACTGAAC 1135
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1550 AGCAACCTCTAGTGGAAGAAAGGATATCTAAGCAAGCTGGTACGAGAAGGACTACTGAAC 1609
Query 1136 ACT-TTTCTGAAAGTTCAGAAATTCATGACACAGACATCAGAAATACATATGTCTCACAA 1194
| | ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1610 A-TATTTCTGAAAGTTCAGAAATTCATGACATAGACATCAGAAATACATATGTCTCGCAA 1668
Query 1195 AGCGAAGACCAGATTAGTAACCAAGAAGTACATGCTGGCTTGGTTTCTGGTTTGCAATCT 1254
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 AGAGAAGACCAGATTAGAAACCAAGAAGTACATGCTGGCTTGGTTTCTGGTTTGCAATCT 1728
Query 1255 GAAAGGAAGCAGCAAGATTATCATATTGAACATAATCCCTTGCAAAAGACGCAATCTGAC 1314
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1729 GAAAGGAAGCAGCAAGATTATCATATTGAACATAATCCCTTGCAAACGACGCAATCTGAC 1788
Query 1315 AGAACTTCTGTGTCTGTATCTCATACCAGTGATGCAGTAAGTTATACTGAAATTCAGAGA 1374
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 1789 AGAACTTCTGTGTCTGTATCTCATACTAGTGATGCAGTAAGGTATACAGAAATTCAGAGA 1848
Query 1375 AAATCCGAGAAGAGGCTGATTGGTCAAGGAAGTACTACGATTGTGCAATCGGACAGCAAA 1434
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1849 AAATCTGAGAAGAGGCTGATTGGTCAAGGAAGTACTACGGCTGTGCAATCGGACAGCAAA 1908
Query 1435 GTAGAAAAAAGTGGTGCTTGGAAAGAAGGCTCTAGGCTAGATCAGGCTAACTCGAAACAA 1494
|||||||||| ||||||| |||||||| ||||||| ||||||| |||||||||||| ||
Sbjct 1909 GTAGAAAAAAATGGTGCTCAGAAAGAAGACTCTAGGTTAGATCATGCTAACTCGAAAAAA 1968
Query 1495 GAAGATCAAACGACCTTAGGGTTGCAAAGTTATCAGTCAAAGCTATCTGAAGAGGCCTCA 1554
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 GATGGTCAAACGACCTTAGGGTTGCAAAGTTATCAGTCAAAGCTATCTGAAGAGGCCTCA 2028
Query 1555 AGTTCACAATCATCTTTGATGGTCTCGCGAAAC-AAATTACAACTGGTAGATCTGGTTTC 1613
|||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct 2029 AGTTCACAATCATCTTTGATGGCCTCGCG-AACTAAATTACAACTGGTAGATCTGGTTTC 2087
Query 1614 AGAGGAAATGCAAGGATCTGAAACAACACTGATTCCTCCTTCTTCTCAGCTGGTAAGCAG 1673
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2088 AGAGGAAATGCAAGGATCTGAAACGACACTGATTCCTCCTTCTTCTCAGCTGGTAAGCAG 2147
Query 1674 AAGATCAGGGCAAAGCTATGGAACTGGTGGAGTTTCCATTCAAGAAATTTCCCATGGAAC 1733
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2148 AAGATCAGGACAAAGCTACAGAACTGGTGGAGTTTCCATTCAAGAAATTTCCCATGGAAC 2207
Query 1734 TTCAGAAAGTGGTTATCCCACAGCCTTTGAACATCCAAGAGCAGGAGCTTCTTCTGTTAA 1793
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 2208 TTCAGAAAGTGGTTATACCACAGCCTTTGAACATCCAAGAGCAGGAG---CTTCTGTTAA 2264
Query 1794 TAGTCAGTCTGCTGGAGAACTGATGGGATTTACATCACATGAAGATGCTATGGGTTCTGC 1853
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2265 TAGTCAGTCTGCTGGAGAACTGATGGGATTTACGTCACATGAAGATGCTATGGGTTCTGC 2324
Query 1854 TCGTCGGTTGGAACAGTCATCAGAGAAATACGTTGGGGAGTTTTTGAAAAGGGCCAAACA 1913
|| ||||||||||||| ||||||||||||| |||||||||||| |||||| |||||||||
Sbjct 2325 TCATCGGTTGGAACAGGCATCAGAGAAATATGTTGGGGAGTTTGTGAAAAAGGCCAAACA 2384
Query 1914 TGAAGTTATAAATCCGGAGACTGAGGAGCAAAGAGCTGAAAGCAATCAATTGAAGAGGCG 1973
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2385 TGGAGTTATAAATCCGGAGACTGAGGAGCAAAGAGCTGAAAGCAATCAATTGAAGAGGCG 2444
Query 1974 GGACTCAAGGCGGCCATCTGGTGGTTCAGGAGCAAAGGGACCTTCAGATGAAATGTGGGT 2033
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2445 GGACTCAAGGCGATCATCTGGTGGTTCAGGAGCAAAGGGACCTTCAGATGAAATGTGGGT 2504
Query 2034 AACAGATTCTGCTCAGGGAACTCCTCATCCAGGAGCCACAGAAGGCAATGCAGCAGAT-G 2092
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 2505 AACGGATTCTGCTCAGGGAACTCCTCATCCAGGAGCCACAGAAGGCAATGCAGCAG-TGG 2563
Query 2093 GGAATGCTATTTTCAAAAGAAATGGTAGGTCCTTGTGGAATGTTATAGCTGATATTGCTC 2152
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2564 GGAATGCTATTTTTAAAAGAAATGGTAGGTCGTTGTGGAATGTTATAGCTGATATTGCTC 2623
Query 2153 GGCTTAGGTGGGGATCCCGAGCTGGGAGCCCTGACTCGAGTGCAAAGCCCGCTGGAAAGA 2212
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 2624 GGCTTAGGTGGGGCTCCCGAGCTGGAAGCCCTGACTCGAGTGCAAAGCCCGCTGGAAGGA 2683
Query 2213 GTTCACCCAATGAGTCAGTTAGCAGCGCAACATGGTTTTCTGGACGTGAGCATGACGGAA 2272
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2684 GTTCACCCAACGAATCAGTTAGCAGTGCAACATGGTTTTCTGGACGTGAGCATGACGGAA 2743
Query 2273 GCAGTGATGATAACACAAAAGGGGATAAAGTTTTGCCACAAGAAGCTCCTTCCCTAAATC 2332
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2744 GCAGTGATGATAACACAAAAGGGGATAAAGTTTTGCCACAAGAAGCTCCTTCCCTACATC 2803
Query 2333 AGTTGGAGGTTGGTCAAACTTCTCCTAGAAGCCAATTTGAATATTCCAGCACTACAAAAC 2392
|| ||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct 2804 AGGTGGAGGTTGGTCAAACTTCTCCTAGAAGCCAATCTGAATATCCCGGCACTACAAAAC 2863
Query 2393 TGAAGCAGCGATCTGAACAGCATGAAGGTGTGGTATCATTGTCATCTTCCACAATAGTAG 2452
|||||||||||||||||| |||||||||||||||||||| | |||||||||||||| |||
Sbjct 2864 TGAAGCAGCGATCTGAACGGCATGAAGGTGTGGTATCATCGCCATCTTCCACAATATTAG 2923
Query 2453 AGGGTGGCTCAGTATCCAATCACATGTCTTCTACATCTGGTAATCAAATTGTTGGTGTGG 2512
|||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 2924 AGGGTGGCTCAGTATCGAATCGCATGTCTTCCACATCTGGTAATCAAATTGTTGGTGTGG 2983
Query 2513 ATGAAGAAGAAGGCGGAAACTTTGAGTTCCGTCTTCCTGAAACAGCTTTGACAGAGGTGC 2572
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2984 ATGAAGAAGAAGGTGGAAACTTTGAGTTCCGTCTTCCTGAAACAGCTTTGACAGAGGTTC 3043
Query 2573 CAATGAAACTGCCTAGTCGAAACCTGATAAGATCTCCTGCTATCAAGGAACCTTCAGAAT 2632
||||||||||||||||||| |||||||||||||||||| |||| |||||| |||||||||
Sbjct 3044 CAATGAAACTGCCTAGTCGGAACCTGATAAGATCTCCTCCTATTAAGGAATCTTCAGAAT 3103
Query 2633 CTAGTCCCACCGAGGCACCCAGTGATCAAAATGTTACTGTGGGAGAAGGAAGACGCTACC 2692
|||||| ||||||||| |||||||||||||| |||||||||| ||||||||||||||||
Sbjct 3104 CTAGTCTTACCGAGGCATCCAGTGATCAAAATTTTACTGTGGGGGAAGGAAGACGCTACC 3163
Query 2693 CTGGAATGGATGCAG 2707
|| ||||||||||||
Sbjct 3164 CTAGAATGGATGCAG 3178
Score = 1155 bits (625), Expect = 0.0
Identities = 682/709 (96%), Gaps = 5/709 (1%)
Strand=Plus/Plus
Query 2704 GCAGACTCTGCGTTGATACAAAGGAAACTTCAGAGGAACAAACAGGTTGTGAGGGATAGT 2763
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3346 GCAGACTCTGCGTTGATACAAAGGAAACTTCAGAGGAATAAACAGGTTGTGAGGGATAGT 3405
Query 2764 TTTGAGGAGTGGGAGGAAGCATACAAAGTAGAAGCTGAAAGGCGAACAGTTGATGAAATA 2823
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 3406 TTTGAGGAGTGGGAAGAAGCATACAAGGTAGAAGCTGAAAGACGAACAGTTGATGAAATA 3465
Query 2824 TTCATGAGAGAAGCGTTAGTAGAAGCTAAGAAGGCTGCTGATACATGGGAGGTACCTGTC 2883
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3466 TTCATGAGGGAAGCGTTAGTTGAAGCTAAGAAGGCTGCTGATACATGGGAGGTACCTGTC 3525
Query 2884 GGTGCTGTGCTTGTTCATGATGGGAAGATTATTGCCCGGGGTTATAACCTAGTAGAGGAG 2943
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 3526 GGTGCTGTGCTTGTTCATGATGGAAAGATTATTGCCCGTGGTTATAACCTAGTAGAGGAG 3585
Query 2944 CTTCGGGATTCAACCGCCCATGCAGAAATGATTTGCATTCGAGAGGGTTCCAAAGCACTT 3003
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3586 CTTCGTGATTCAACTGCCCATGCAGAAATGATTTGCATTCGAGAGGGTTCTAAAGCACTT 3645
Query 3004 CGTTCATGGAGGCTCGCGGATACAACGCTCTATGTAACACTAGAACCGTGCCCAATGTGT 3063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3646 CGTTCATGGAGGCTCGCGGATACAACGCTCTATGTAACACTAGAACCGTGCCCAATGTGT 3705
Query 3064 GCGGGAGCAATACTTCAAGCAAGGGTCAACACTCTAGTGTGGGGTGC-CCCGAATAAGCT 3122
||||||||||||||||||||||||||||||||||| || |||||||| ||| ||||||||
Sbjct 3706 GCGGGAGCAATACTTCAAGCAAGGGTCAACACTCTTGTATGGGGTGCTCCC-AATAAGCT 3764
Query 3123 TCTCGGAGCAGATGGCAGCTGGATCAGGCTGTTCCCTGGAGGCGAAGGAAATGGATCAGA 3182
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3765 TCTCGGAGCAGATGGAAGCTGGATCAGGCTGTTCCCTGGAGGCGAAGGAAATGGATCAGA 3824
Query 3183 GGTTTCAGAAAAGCCACCGCCTCCAGTTCATCCATTCCATCCTAAGATGACAATCCGGCG 3242
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3825 GGCTTCAGAAAAGCCACCACCTCCAGTTCATCCATTCCATCCTAAGATGACAATCCGGCG 3884
Query 3243 CGGAGTTCTCGAATCAGAATGTGCTCAGACAATGCAGCAGTTTTTCCAACTTAGGAGAAA 3302
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 3885 CGGAGTTCTTGAATCAGAATGCGCTCAGACAATGCAGCAGTTTTTCCAGCTTAGGAGAAA 3944
Query 3303 AAAGAAAGAGAAGATCTCAGATCCACCTACTCCTACCGATCATCATCA-C--CATCTTCC 3359
||||||||| |||| ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 3945 AAAGAAAGACAAGAACTCAGATCCACCTACTCCTACCGATCATCATCATCATCATCTTCC 4004
Query 3360 CAAACTCCTCAACAAAATGCATCAAGTCTTACCCTTTTTCTGTCTGTAG 3408
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 4005 CAAACTCCTCAACAAGATGCATCAAGTCTTACCCTTTTTCTGTCTGTAG 4053
Score = 534 bits (289), Expect = 2e-150
Identities = 309/319 (97%), Gaps = 0/319 (0%)
Strand=Plus/Plus
Query 1 ATGTTCAATACATACACAAATTCAGTTCTATGGCCGATTCGAAGTAGAAATCACCAAGAT 60
|||||||||||||||||||| ||| ||| |||||||||||||||||||||||| ||||||
Sbjct 130 ATGTTCAATACATACACAAACTCACTTCAATGGCCGATTCGAAGTAGAAATCAACAAGAT 189
Query 61 TACTGCTCTTTGCTCACTGAGAGATCTGAAAGTTACCAACTTTCAAAAGCATCTACATCG 120
||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 190 TACTGCTCTTTGCTCCCTGAGAGATCTGAAAGTTACAAACTTTCAAAAGCATATACATCT 249
Query 121 TCGAGATGTTACTGTGTTAGTTCTCGCTCAAGTTGTTGCTGTTGTTGTTCAACACCATCT 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 250 TCGAGATGTTACTGTGTTAGTTCTCGCTCAAGCTGTTGCTGTTGTTGTTCAACACCATCT 309
Query 181 TCTTCTTCATTTGTTAAGCCTAAGGTATTGATAAACCCTGGATTTGTGCTTTATGGGGTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 TCTTCTTCATTTGTTAAGCCTAAGGTATTGATAAACCCTGGATTTGTGCTTTATGGGGTT 369
Query 241 AGACAATCTACGCTTATTCAGTGGCCTTCGTTTCAAAGGAGGTTGCTTGTGGGTGGAGGG 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 370 AGACAATCTACGCTTATTCAGTGGCCTTCGTTTCAAAGGAGGTTACTTGTGGGTGGAGGG 429
Query 301 AGACTTATGGGTTGTGAGG 319
|||||||||||||||||||
Sbjct 430 AGACTTATGGGTTGTGAGG 448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 169614434283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5