BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg339129

Length=981
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G17170.1 | Symbols:  | Protein kinase superfamily protein | ...   182    7e-45


> AT2G17170.1 | Symbols:  | Protein kinase superfamily protein 
| chr2:7474736-7476438 FORWARD LENGTH=987
Length=987

 Score =  182 bits (98),  Expect = 7e-45
 Identities = 251/322 (78%), Gaps = 21/322 (7%)
 Strand=Plus/Plus

Query  89   TCAGAGAGGTC-TCCTACTCCGATCTCAAGACGGCGACCAAGAACTTCAGTTCCGACGAG  147
            ||| |||| || |||| ||||||| |||  ||||||||||| ||||||||||||||||||
Sbjct  110  TCACAGAGTTCTTCCT-CTCCGATATCACCACGGCGACCAATAACTTCAGTTCCGACGAG  168

Query  148  ATTGTATCGGAGAAAGCAGAGGAATCATCCAATATCATCTAC-AAGG--GCGAATCACAG  204
            ||  |||| ||||| ||||| ||||| |||||| |  ||||| ||||  |   || | ||
Sbjct  169  ATCATATCAGAGAACGCAGAAGAATCTTCCAATGTTGTCTACAAAGGTTGTTTATTAGAG  228

Query  205  -AGCTCCGGCTCCATTGCTGTCAAGTA-CTTCAAGAACATGGCTTGGCCTTATCGTGATC  262
             | ||  |||| | | ||||||||| |  |||||||| | | |||||  | ||| ||| |
Sbjct  229  AATCT-TGGCTTCGTAGCTGTCAAG-AGATTCAAGAATACGCCTTGGGATGATCCTGA-C  285

Query  263  -AGTTTGCGGAAGAGGCACGAAA-AG-TGGGGAAGATTAGGCACAAGGGAGTCGTGAAGA  319
             | ||  ||||||| |||  ||| || ||||| || | | ||||||| || | || ||| 
Sbjct  286  TACTTCACGGAAGACGCA-AAAACAGCTGGGG-AGCTAAAGCACAAGAGACTTGTCAAGT  343

Query  320  TGATT-GGATGTTGCTGTGATGG-AGATGAAAGG-TTTCTTGTTGCAGAGTTTTTGCCAA  376
            || || |||| |||||| || || ||||| ||||  ||||||||||||||||| ||||||
Sbjct  344  TG-TTGGGATATTGCTGCGA-GGAAGATG-AAGGACTTCTTGTTGCAGAGTTTATGCCAA  400

Query  377  ATGATACTCTTGCTAAGCGTTT  398
            ||||||||||||||||||||||
Sbjct  401  ATGATACTCTTGCTAAGCGTTT  422



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 48023844532


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5