BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg339129 Length=981 Score E Sequences producing significant alignments: (Bits) Value AT2G17170.1 | Symbols: | Protein kinase superfamily protein | ... 182 7e-45 > AT2G17170.1 | Symbols: | Protein kinase superfamily protein | chr2:7474736-7476438 FORWARD LENGTH=987 Length=987 Score = 182 bits (98), Expect = 7e-45 Identities = 251/322 (78%), Gaps = 21/322 (7%) Strand=Plus/Plus Query 89 TCAGAGAGGTC-TCCTACTCCGATCTCAAGACGGCGACCAAGAACTTCAGTTCCGACGAG 147 ||| |||| || |||| ||||||| ||| ||||||||||| |||||||||||||||||| Sbjct 110 TCACAGAGTTCTTCCT-CTCCGATATCACCACGGCGACCAATAACTTCAGTTCCGACGAG 168 Query 148 ATTGTATCGGAGAAAGCAGAGGAATCATCCAATATCATCTAC-AAGG--GCGAATCACAG 204 || |||| ||||| ||||| ||||| |||||| | ||||| |||| | || | || Sbjct 169 ATCATATCAGAGAACGCAGAAGAATCTTCCAATGTTGTCTACAAAGGTTGTTTATTAGAG 228 Query 205 -AGCTCCGGCTCCATTGCTGTCAAGTA-CTTCAAGAACATGGCTTGGCCTTATCGTGATC 262 | || |||| | | ||||||||| | |||||||| | | ||||| | ||| ||| | Sbjct 229 AATCT-TGGCTTCGTAGCTGTCAAG-AGATTCAAGAATACGCCTTGGGATGATCCTGA-C 285 Query 263 -AGTTTGCGGAAGAGGCACGAAA-AG-TGGGGAAGATTAGGCACAAGGGAGTCGTGAAGA 319 | || ||||||| ||| ||| || ||||| || | | ||||||| || | || ||| Sbjct 286 TACTTCACGGAAGACGCA-AAAACAGCTGGGG-AGCTAAAGCACAAGAGACTTGTCAAGT 343 Query 320 TGATT-GGATGTTGCTGTGATGG-AGATGAAAGG-TTTCTTGTTGCAGAGTTTTTGCCAA 376 || || |||| |||||| || || ||||| |||| ||||||||||||||||| |||||| Sbjct 344 TG-TTGGGATATTGCTGCGA-GGAAGATG-AAGGACTTCTTGTTGCAGAGTTTATGCCAA 400 Query 377 ATGATACTCTTGCTAAGCGTTT 398 |||||||||||||||||||||| Sbjct 401 ATGATACTCTTGCTAAGCGTTT 422 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48023844532 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5