BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339148
Length=2706
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69070.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 4156 0.0
AT1G69060.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 56.5 1e-06
> AT1G69070.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Nop14-like protein (InterPro:IPR007276); Has 69842 Blast
hits to 35213 proteins in 1572 species: Archae - 363; Bacteria
- 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912;
Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink).
| chr1:25967312-25971389 REVERSE LENGTH=2815
Length=2815
Score = 4156 bits (2250), Expect = 0.0
Identities = 2579/2731 (94%), Gaps = 50/2731 (2%)
Strand=Plus/Plus
Query 1 ATGGGGAAAGATAACAAAACGAAGAAGAAGCCTAACAAAAAAGGCGAAAGAAGAATGGGA 60
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAAAGATAACAAAATGAAGAAGAAGCCTAACAAAAAAGGCGAAAGAAGAATGGGT 60
Query 61 CCAGATGCAGTCGCCATGAAAGCTAAAACCCAGAAGGTCGATAATCCATTTGAATCAATC 120
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CCAGATGCAGTGGCCATGAAAGCTAAAACGCAGAAGGTCGATAATCCATTTGAATCAATC 120
Query 121 CGCTCTCGCCGAAAGTTCGATATCCTCGGAAAGAAGCGTAAAGGTGAAGAACGGTTCGTC 180
|| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 121 CGATCTCGCCGGAAGTTCGATATCCTCGGAAAAAAGCGTAAAGGTGAAGAACGATTCGTC 180
Query 181 AGTGTCTCTCGAACTCGTGCTGTTGATAAGAGGAAGAACACGCTGCAGAAAGAGTATGAG 240
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 AGTGTTTCTCGAACTCGTGCTGTTGATAAGAGGAAGAACACGCTGGAGAAAGAGTATGAG 240
Query 241 CAAAGCTTAAAAGCTTCGGt-ttttttGGATAAGCGTATTGGAGAACATG-ATGATGAGC 298
|| || |||||| ||||||| || || |||||||||||||||||||| | | |||||||
Sbjct 241 CAGAGTTTAAAATCTTCGGTGTTCCTT-GATAAGCGTATTGGAGAACA-GAACGATGAGC 298
Query 299 TTGGTGAGTTCGATAAGGGTATAATTCGATCGCAGAGACAGCGTCAGTTGAAACTAGCGA 358
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 299 TTGGTGAATTCGATAAGGGTATAATTAGATCGCAGAGACAGCGTCAGTTGAAACTAGCGA 358
Query 359 AGAAGAGTATGTATAATTTGTCTGATGGGGAAGAGGATGTATATGAAGATGGTGCTCTTG 418
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 359 AGAAGAGTATGTATAATTTGTCTGATGGTGAAGAAGATGTTTATGAAGATGGTGCTCTTG 418
Query 419 GTGGTTCTTCTGTAAGGGATGATTTTGATTCTGGACTTTTGTCTGATGAAGATCTTCAAG 478
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTGGTTCTTCTGTAAAGGATGATTTTGATTCTGGACTTTTGTCTGATGAAGATCTTCAAG 478
Query 479 ATGATGATCAAGAAGCTTCTGCATTAAAGAGATTGAAGCATCTAAACAGAAACAGACAGG 538
|||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| |||
Sbjct 479 ATGATGATTTAGAAGCTTCTGCATCAAAGAGACTGAAGCATCTAAACAGAAACAGAGAGG 538
Query 539 TTGACGCATCTGGAGAGGAAGAGAGACATAAGAGCAAGAAGGAAATCATGGAAGAGATCA 598
|||| |||||||||||||||||||| | |||||| ||||||||| |||||||||||||||
Sbjct 539 TTGATGCATCTGGAGAGGAAGAGAGGCGTAAGAGTAAGAAGGAAGTCATGGAAGAGATCA 598
Query 599 TCATGAAGAGCAAACTTGGCAGGATGGAGAAAGCTAAGCAAAAGGAGGAAAAGGGAAAGC 658
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCATGAAGAGCAAACTTGGTAGGATGGAGAAAGCTAAGCAAAAGGAGGAAAAGGGAAAGC 658
Query 659 TAATGGATGAGCTGGATGAAAATTTCAAGTCTTTAGTGAATTCTCAGGCGATGGAGAGTT 718
||||||||||||| ||| |||| |||||||| |||||||||||| |||||||||||||||
Sbjct 659 TAATGGATGAGCTTGATAAAAACTTCAAGTCCTTAGTGAATTCTGAGGCGATGGAGAGTT 718
Query 719 TAACTAAGCCTTTTGAT-GTCGAAGAGGATACACGCAATCCTTATGTATTAATG-CTGAA 776
||||||||||||||| | | ||||||| |||||||| |||||||| || ||| | |||||
Sbjct 719 TAACTAAGCCTTTTG-TAGCCGAAGAGAATACACGCGATCCTTATCTACTAA-GTCTGAA 776
Query 777 TGATATGGCAATGGATATTCGTGCTCGTCCTTCTGAGAGGACAAAGACACCTGAAGAAAT 836
||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGATATGTCAATGGAAATCCGTGCTCGTCCTTCTGAGAGGACAAAGACACCTGAAGAAAT 836
Query 837 TGCCCAGAAAGAGCGAGAAAAGTTAGAGGCTCTTGAGGAAGAGCGTAAGAAAAGGATGCA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGCCCAGAAAGAGCGAGAAAAGTTAGAGGCTCTTGAGGAAGAGCGTAAGAAAAGGATGCA 896
Query 897 GGAAACTGAGGAGTTAAGCGATGGGGATGAGGAAATTGGCGGTGAGGAATCAACAAAGAG 956
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 897 GGAAACTGAGGAGTTAAGTGATGGGGATGAGGAAATTGGCGGTGAGGAGTCTACAAAGAG 956
Query 957 GCCAAGGGTCATTTCTGGTGATGATCTTGGTGATTCCTTCTCAGTTGAAGAAGATAAGCC 1016
|| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 957 GCTAACTGTCATTTCTGGTGACGATCTTGGTGATTCCTTCTCAGTTGAAGAAGATAAGCC 1016
Query 1017 GAAAAGGGGATGGATTGATGATGTTCTTGAAAGAGAGGATGATGTTGATAATTCAGAAAG 1076
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1017 GAAAAGGGGATGGATTGATGATGTTCTTGAAAGAGAGGATAATGTTGATAATTCAGAAAG 1076
Query 1077 TGATGAGAATGATAGCTCTTCTGAGGATTCAGAAAGTGAAGAAGAAGAAGATGATGA-G- 1134
||| ||| ||| | |||||||||||||||||||||||||||||||||| |
Sbjct 1077 TGACGAG---GAT-G--------AGGATTCAGAAAGTGAAGAAGAAGAAGATGATGATGG 1124
Query 1135 T----CAGATGGGGGTGATGAGAAGCAGAGAAAACGTCATCATTTAGAAGACTGGGAACA 1190
| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1125 TGAGTCAGATGGAGGTGATGAGAAGCAGAGAAAAGGTCATCATTTAGAAGACTGGGAACA 1184
Query 1191 AAGtgatgatgagctaggggatgagctggaagatgaggaggaggatgatgatgaagaaga 1250
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1185 AAGTGATGATGAGCTAGGGGCTGAGCTGGAAGATGAGGAAGAGGATGATGATGAAGAAGA 1244
Query 1251 tgatga-g---------C----C-AAGAGTACATAAAAAGTTGAAGAATGACTATGCTGC 1295
|||||| | | | ||| ||||||||||||||||||||||||||||||||
Sbjct 1245 TGATGATGAAGAGGATGCTGAGCTAAGGGTACATAAAAAGTTGAAGAATGACTATGCTGC 1304
Query 1296 TCCAAATAAAGGAGAAGTGTTGTCTGGAACAGTGAAACaaaaaaaCAATATGAAGAAATT 1355
|||| |||||||||||| |||||| |||||||||||| |||||| ||||||||||||| |
Sbjct 1305 TCCATATAAAGGAGAAGGGTTGTCGGGAACAGTGAAAGAAAAAACCAATATGAAGAAAAT 1364
Query 1356 GAGTTCAACGCAGCGTGACATTCCGTTCATGATTGATCCTCCAAAGAATTTCGAGGAATT 1415
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1365 GAGTTCAACGCAGCGTGATATTCCCTTCATGATTGATCCTCCAAAGAATTTCGAGGAATT 1424
Query 1416 GCTTGCCCTAGTGGAAGATTGTTCAAATGAAGATGTTATTTTAATTGTCAACCGAATCCG 1475
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1425 ACTTGCCCTAGTGGAAGATTGTTCAAATGAAGATGTTATTCTAATTGTCAACCGAATCCG 1484
Query 1476 GATAGCACACTCAATTAAGATTAAAGCTGAAAACCGAAAAAAGATGCAGGTCTTCTATGG 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 GATAGCACACTCAATTAAGATTAAAGCTGAAAACCGAAAAAAGATGCAGGTCTTCTATGG 1544
Query 1536 TGTTCTCTTGCAGTATTTTGCCGTTCTTACAAGCAAAAAGCCCTTGAACTTTGATTTACT 1595
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1545 TGTTCTCTTGCAGTATTTTGCCGTTCTTGCAAGCAAAAAGCCCTTGAACTTTGATTTACT 1604
Query 1596 AAATATGCTTGTCAAACCTTTGATTGAGATGAGCATGGAGATCCCCTACTTTGCTGCAAT 1655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 AAATATGCTTGTCAAACCTTTGATTGAGATGAGCATGGAGATCCCCTACTTTGCTGCAAT 1664
Query 1656 ATGTGCTCGCCAGCGGCTTTTAAAGACCCGTGCACAATTTTGCGAGGCTATCAAGAATCC 1715
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1665 ATGTGCTCGCCAGCGGCTTTTAAAGACCCGTTCACAATTTTGCGAGGCTATCAAGAATCC 1724
Query 1716 AGAGGATGGATGCTGGCCTTCCTTGAAAACATTGTTTCTCTTGCGGCTCTGGTCCATGAT 1775
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1725 AGAGGATGGATGCTGGCCTTCCTTGAAAACATTATTTCTCTTGCGGCTCTGGTCCCTGAT 1784
Query 1776 TTTTCCATGCTCTGACTTTCGCCATGCTGTGATGACCCCATCGATATTGTTGATGTGTGA 1835
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1785 TTTTCCATGCTCTGACTTTCGCCATGCTGTGATGACCCCATCGATTTTGTTGATGTGTGA 1844
Query 1836 ATATCTCATGCGCTGTCCCATCTCTTCTGGTCGTGATATTGCCATAGGTTCCTTTTTATG 1895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 ATATCTCATGCGCTGTCCCATCTCTTCTGGTCGTGATATTGCCATAGGTTCCTTTTTATG 1904
Query 1896 CTCCATTGTTCTCTTGGTTGCCAAGCAATCTAAAAAGTTCTGTCCTGAAGCCATATTATT 1955
|||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 1905 CTCCATTGTTCTCTTG----C-AA----TCTAAAAAGTTCTGTCCTGAAGCCATATTATT 1955
Query 1956 TATTCGGACCCTCCTGATGGCTGCTTCAGACAAAAAGTCACCATCATCTGCGGAATCTGA 2015
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1956 TATTCGGACTCTCCTGATGGCTGCTTCAGACAAAAAGTCACCAGCATCTGCGGAATCTGA 2015
Query 2016 GTTTTATCATTTCATGGAATTAAAATCGTTGACTCCATTGCTGTGCATACAAGACAACGT 2075
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2016 GTTTTATCATTTTATGGAATTAAAATCGTTGACTCCATTGCTGTGCATACAAGACAACGT 2075
Query 2076 AAAGGAGGTCATGCCTTTAAACTTCCTAAAGATAATGAATGAGCCAGCAGACTCTCCATA 2135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2076 AAAGGAGGTCATGCCTTTAAACTTCCTAAAGATAATGAATGAGCCAGCAGACTCTCCATA 2135
Query 2136 TTTCAGCTCTGATGATTTCAGAGCAAGCATCCTTTCAAGTGTAGTTGATACTCTTGGAGG 2195
||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||
Sbjct 2136 TTTCAGCTCTGATGATTTCAGAGCAAGCATCCTTTCAAGTGTAGTCGAGACTCTTGAAGG 2195
Query 2196 GTTTGTGGAGATAAACGGAGGATTGAGTTCCTTTCCAGAGATCTTCATGCCCATCTCAAC 2255
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2196 GTTTGTGGAGATAAATGGAGGATTGAGTTCCTTTCCAGAGATCTTCATGCCCATCTCAAC 2255
Query 2256 TTTATTGCACCAAATTGGGAACCAAGAAAAGATCCCACAAACTCTCAAGGAGAAATTAGA 2315
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2256 TTTATTGCACCAAATTGGAAACCAAGAAAAGATCCCACAAACTCTCAAGGAGAAATTAGA 2315
Query 2316 AGATGTCGCAAAGCTAATCGAAACGAAAACCGATGAGCATCACAAGGAACGCAAACCACT 2375
|||||| |||||||||||||||| ||||||||| || |||||||||||||||||||||||
Sbjct 2316 AGATGTTGCAAAGCTAATCGAAAAGAAAACCGACGACCATCACAAGGAACGCAAACCACT 2375
Query 2376 CTCTATGCGTAAGCATAAGCCAGTAGCCATCAAAATGGTCAATCCCAAATTTGAGGAGAA 2435
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 2376 CTCTATGCGTAAGCATAAGCCAGTAGCCATCAGAATGGTCAATCCCAAATTTGAAGAGAA 2435
Query 2436 CTTTGCTCCAGGCAGGGATTACGATCCAGACAAATACCGTTCTGACCTCAAAAAGTTGAA 2495
||||| |||||||| |||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 2436 CTTTGTTCCAGGCATGGATAACGATCCAGACAAATACCGTTCTGACCTCAAAAAATTGAA 2495
Query 2496 GAGAAAGTTAAAACAGGAAGCCAAAGGAGCAGTGCGTGAGCTGCGCAAAGACAGCTACTT 2555
|||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 2496 GAGAAAGTTAAAACGGGAAGCCAGAGGAGCAGTTCGTGAGCTGCGCAAAGACAGCTACTT 2555
Query 2556 CATGAGCTCGGTTAAAGCGAAAGAGAAAGCTGTGCATGAGCAAGAGAGAGCAGAGAAACA 2615
||||||| | |||||||| |||||||| |||| |||||||||||||||||||||||||||
Sbjct 2556 CATGAGCACTGTTAAAGCAAAAGAGAAGGCTGCGCATGAGCAAGAGAGAGCAGAGAAACA 2615
Query 2616 TGGCAAAGCTTGGGCTTTTCTTCAAGAACAAGAACATGCTTTCAAATCTGGACAACTTGG 2675
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2616 TGGCAAAGCTTGGGCTTTCCTTCAAGAACAAGAACATGCTTTCAAATCTGGACAACTTGG 2675
Query 2676 TAAAGGCAAAGGCAAGAAGAGAAGACGTTGA 2706
|||||||||||||||||||||||||||||||
Sbjct 2676 TAAAGGCAAAGGCAAGAAGAGAAGACGTTGA 2706
> AT1G69060.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr1:25964468-25967450 FORWARD LENGTH=2309
Length=2309
Score = 56.5 bits (30), Expect = 1e-06
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Minus
Query 2677 AAAGGCAAAGGCAAGAAGAGAAGACGTTGA 2706
||||||||||||||||||||||||||||||
Sbjct 2309 AAAGGCAAAGGCAAGAAGAGAAGACGTTGA 2280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134397240297
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5