BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339154
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69170.1 | Symbols: | Squamosa promoter-binding protein-lik... 1838 0.0
AT2G42200.1 | Symbols: SPL9, AtSPL9 | squamosa promoter binding... 82.4 1e-14
> AT1G69170.1 | Symbols: | Squamosa promoter-binding protein-like
(SBP domain) transcription factor family protein | chr1:26005068-26007263
FORWARD LENGTH=1829
Length=1829
Score = 1838 bits (995), Expect = 0.0
Identities = 1162/1238 (94%), Gaps = 30/1238 (2%)
Strand=Plus/Plus
Query 4 GAT-GATTCTTGGAGCTACGGGAGAAGCGTTTTCATGTCAAATGAAACTCTTTTACCTTG 62
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 GATGGATTCTTGGAGCTACGGGAGAAGCGTTTTCATGTCAAATGAAACTCTTTTACCTTG 448
Query 63 TGATTCTTTTGCTGAGAATAGAAGATTTGAACAGAGACTCTCTAATGAATTGAGGAATGA 122
|||| |||||||| |||||||||||||||||||||||||||| | || | | |
Sbjct 449 TGATACTTTTGCTAAGAATAGAAGATTTGAACAGAGACTCTC---T-AA-T-----A--A 496
Query 123 TGATGATGATTTGTTGATTTCTGACATGGCTGGTAACTCCAATGGATTCAGTGCTGTTTC 182
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 TGATGATG---TGTTGATTTCTGACATGGCTGGTAACTCCAATGGATTCAGTGCTGTTTC 553
Query 183 TATTACCAAAGTGGTTCCTGAAGAGGAAGAGGAGGAGAACCA-ATCTTCTTCTTCAAAGT 241
|||||| ||||| ||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 554 TATTACTAAAGTTGTTCCTGAAGAGGAAGATGAGGAGAA-CATATCTTCTTCTTCAAAGT 612
Query 242 TGTCTAGTCAGGAATTGAATAGGATAGATTTCAAACTTAGGAGCATTTTGGATTTAGG-A 300
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 613 TCTCTAGTCAGGAATTGAATAGGATAGATTTCAAACTTAGGAGCTTTTTGGATTTAGGAA 672
Query 301 A--ATGATGATGATACATCCTCTAGAGGTTTTGCTCTGCCAGCTAAAAAGTCTCGAGCTT 358
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 673 ATGATGATGATGATACATCCTCTAGAGGTTTTGCTCTGCCATCTAAAAAGTCTCGAGCTT 732
Query 359 CAAACATGTGCTCTCAGAATCCCTTGTGTCAAGTTTATGGGTGTAATATGGATCTGAGCT 418
||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 733 CAAACTTGTGCTCTCAGAATCCCTTGTGTCAAGTTTATGGGTGTAGTAAGGATCTGAGCT 792
Query 419 CTTCGAAAGATTACCACAAAAGGCATAGAGTTTGCGAGGCTCATTCGAAAACTTCCGTGG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 793 CTTCGAAAGATTACCACAAAAGGCATAGAGTTTGCGAGGCTCATTCGAAAACTTCTGTGG 852
Query 479 TCGTAGTTAAGGGTCTTGAACAGAGGTTTTGTCAACAGTGCAGCAGGTTTCATTTCCTCT 538
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 TCATAGTTAATGGTCTTGAACAGAGGTTTTGTCAACAGTGCAGCAGGTTTCATTTCCTCT 912
Query 539 CAGAATTTGATGATGGCAAAAGAAGTTGCAGAAGGCGATTAGCTGGTCACAATGAACGAA 598
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 913 CAGAGTTTGATGATGGCAAAAGAAGTTGCAGAAGGCGATTAGCCGGTCACAATGAACGAA 972
Query 599 GAAGAAAACCTGCATTCTATTTCCTACCGGGTAAGCGCCATAAGCTTCTTCGCACCTCTC 658
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 GAAGGAAACCTGCATTCTATTTCCTACCGGGTAAGCGCCATAAGCTTCTTCGCACCTCTC 1032
Query 659 AAGGTGTAGTAGGCAACAAGTTTCTGGAGAATTCATCGTTGCTATTGCCAGAGTCATTTC 718
||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1033 AAGATGTAGTAGGCAACAAGTTTCTGGAGAATTCATCATTGGTATTGCCAGAGTCATTTC 1092
Query 719 CTGGTAGTCTTTTATACAGAGTAATAGATGACGACGACCACCGTGCAAGTAGACTCGTGA 778
|||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1093 CTGGTAGTCTCTTATACAGAGTAATAGATGAAGACGACCACCGTACAAGTAGACTCGTGA 1152
Query 779 GTTTCAAAGATGAACCTACTTGCTCTATGTTTCCTGCTATTGGGCAAAACAGCAGCACAA 838
|||||||||||||||||||||| || ||||||||| ||| || |||||||||||||| ||
Sbjct 1153 GTTTCAAAGATGAACCTACTTGTTCCATGTTTCCTACTAATGAGCAAAACAGCAGCAGAA 1212
Query 839 CTTATGAATCTAAACCAGCGATTTATT-CAGCGGAAGTATCCTCTATTTGGGACTTACAT 897
||||||||||||||||||| ||||||| || ||||||||||||| |||||||||||||||
Sbjct 1213 CTTATGAATCTAAACCAGCAATTTATTCCA-CGGAAGTATCCTCCATTTGGGACTTACAT 1271
Query 898 GAGACGGCGGTTTCACGCTCTACTTGTGCTCTCTCTCTTCTGTCAGCTCAGTCCCAACAA 957
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1272 GAGACGGCGGCATCACGCTCTACTCGTGCTCTCTCTCTTCTGTCAGCTCAGTCCCAACAA 1331
Query 958 CACTTGTCTCAA-ATTCCAAACACAACGTTCTCAATCACCCAACCAAACCAAAATCCCAA 1016
||||||||| || ||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1332 CACTTGTCT-AAGTTTCCAAACACAACGTTCTCAATCACCCAACCCAACCAAAATCTCAA 1390
Query 1017 TCACCCATCA-CCAGTAGACTATCATCAAATGG---AACCGTTCTGGATCGATCCTGGCA 1072
|||| ||||| | | | ||||||||||| |||| ||||||| ||||||||||||||||
Sbjct 1391 TCACTCATCATCAACT-GACTATCATCAGATGGAACAACCGTTGTGGATCGATCCTGGCA 1449
Query 1073 AGACCAATTCTGCTGGTTCTAGTTCATGTAAAGGAAAAGGACCATCCACGGTTGATCTAC 1132
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1450 AGACCAATTCTGCTGGTTCTAGTTCTTGTAAAGGAAAAGGAACATCCACGGTTGATCTAC 1509
Query 1133 TGCAACTCTCATCACATCTTCAAAGAATCGAGCAACAGAGGAATTACACTGGTGATGTGA 1192
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 TGCAACTGTCATCACATCTTCAAAGAATCGAGCAACAGAGGAATTACACTGGTGATGTGA 1569
Query 1193 AGCAGGAATATAATGAGCTTTATTTCCCTGGCTCTTAA 1230
|||||||||||||||||||||||||||||||||| |||
Sbjct 1570 AGCAGGAATATAATGAGCTTTATTTCCCTGGCTCCTAA 1607
> AT2G42200.1 | Symbols: SPL9, AtSPL9 | squamosa promoter binding
protein-like 9 | chr2:17587407-17589630 FORWARD LENGTH=1501
Length=1501
Score = 82.4 bits (44), Expect = 1e-14
Identities = 90/111 (81%), Gaps = 8/111 (7%)
Strand=Plus/Plus
Query 496 GAACAGAGGTTTTGTCAACAGTGCAGCAGGTTTCATTTCCTCTCAG-AATTTGA--T-GA 551
|||||||||||||||||||||||||||||||||||| || || | ||||||| | ||
Sbjct 525 GAACAGAGGTTTTGTCAACAGTGCAGCAGGTTTCATCAGCT-TCCGGAATTTGACCTAGA 583
Query 552 TGGCAAAAGAAGTTGCAGAAGGCGATTAGCTGGTCACAATGAACGAAGAAG 602
| ||||| |||||| | ||| || | |||||||| ||||| ||| ||||
Sbjct 584 -G--AAAAGGAGTTGCCGCAGGAGACTCGCTGGTCATAATGAGCGACGAAG 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60441456180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5