BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339164
Length=3129
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69290.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2966 0.0
AT1G68980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1853 0.0
AT1G69280.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1458 0.0
> AT1G69290.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:26047372-26049348 REVERSE LENGTH=1977
Length=1977
Score = 2966 bits (1606), Expect = 0.0
Identities = 1851/1970 (94%), Gaps = 14/1970 (1%)
Strand=Plus/Plus
Query 1 ATGTTCAGAAAAACTCTAACTAT-AATCTCACGAAGACATTTCTCTTCGTCTTCTCCTGA 59
||||||||||||||||||| | | ||||||| ||||||| ||||||||||||||||||||
Sbjct 1 ATGTTCAGAAAAACTCTAAAT-TCAATCTCAAGAAGACACTTCTCTTCGTCTTCTCCTGA 59
Query 60 AAGTCCTTCCCTTTACTCATTCCTTAAACCCTCTCTCTTCTCTAACAAGCCAATCACTCT 119
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 60 AAGTCCTTCTCTTTACTCATTCCTTAAACCCTCTCTCTTCTCTCACAAGCCAATCACTCT 119
Query 120 CACACCTTCACTATCACCGCCTCAAAACCCCAAAACCCTAAC-CCAAGAGCAAAAATCCT 178
| |||| |||||||| |||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 120 CTCACCATCACTATCGCCGCCTCAAAACCCCAAAACCCTAACTCC-AGATCAAAAATCCT 178
Query 179 CCTTTGAATCTACCCTCCACGATTCTTTAACTACCCACAACACCGATGAAGCATGGAAGG 238
||||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||
Sbjct 179 CCTTTGAATCTACCCTCCACGATTCCTTAAATGCCCATTACACCGATGAAGCATGGAAGG 238
Query 239 CTTTTCGATCTCTCACCGCCGCCTCTTCTCTCCCGGAGAAGCGTCTCATCAATTCTCTTA 298
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 239 CTTTTCGGTCTCTCACCGCCGCTTCTTCTCTACCGGAGAAGCGTCTCATCAATTCCCTTA 298
Query 299 TTACCCATTTGTCCAATACCGAAGAAAGCGGTGA-A-AACACTGCACACAGACTCAAGCG 356
|||||||||||||| | ||||| ||||||||| | | | | | || ||||| || ||
Sbjct 299 TTACCCATTTGTCCGGTGTCGAAGGAAGCGGTGAGAGTATA-T-CTCATAGACTTAAACG 356
Query 357 AGCTTTTGCTTCCGCTGCTTATGTAATAGAGAAAGATCCGATTTTGCTTGAGTTTGAGAC 416
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 357 AGCTTTTGCTTCTGCTGCTTATGTAATTGAGAAAGATCCGATTTTGCTTGAGTTTGAGAC 416
Query 417 TGTTCGTACGCTTATGGAGTCGATGAAACTTGCGAAAGCTGCAGGGCCAGCGTTGGCTTT 476
||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 417 TGTTCGTACGCTTTTGGAGTCGATGAAACTTGCGAAAGCTGCAGGGCCTGCTTTGGCTTT 476
Query 477 AGTGAAGTGTATGTTTAAAAACAGGTACTTTGTTCCTTTTGATCTCTGGGGGCATTTGAT 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 477 AGTGAAGTGTATGTTTAAAAACAGGTACTTTGTTCCTTTTGATCTCTGGGGGCATTTGGT 536
Query 537 TATCGATATCTGTAGAGAAAATGGAAGCTTGGCTGCGTTTCTTAAGGTGTTTAAGGAAAG 596
||| ||||||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 537 TATTGATATCTGTCGTGAAAATGGAAGCTTGGCTCCGTTTCTTAAGGTGTTTAAGGAAAG 596
Query 597 TTGTAGAATTGCAGTAGATGAGAAGCTTGATTTTATGAAACCGGATTTGGTAGCTAGTAA 656
|||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 597 TTGTAGAATTTCTGTAGATGAGAAGCTTGAGTTTATGAAACCCGATTTGGTAGCTAGTAA 656
Query 657 TGCGGCTCTTGAAGCGTGTTGTCGGCAGTTGGAATCTTTGGCTGATGCTGAAAATGTGAT 716
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 657 TGCGGCTCTTGAAGCGTGTTGTCGACAGATGGAATCTTTGGCTGATGCTGAAAATGTGAT 716
Query 717 TGAATCTATGGCTGTTTTGGGTGTGAAGCCTGATGAATTGAGCTTTGGGTTTCTTGCTTA 776
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TGAATCTATGGCTGTTTTAGGTGTGAAGCCTGATGAATTGAGCTTTGGGTTTCTTGCTTA 776
Query 777 TTTGTATGCGAGTAAGGGGCTTCGAGAGAAGATAAGTGAGCTTGAGAATTTGATGGATGG 836
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 777 TTTGTATGCGAGGAAGGGGCTTCGAGAGAAGATTAGTGAGCTTGAGAATTTGATGGATGG 836
Query 837 TTTTGGGTTTGCAAGTAGAAGAATACTTTATTCCAATATGATTAGTGGGTATGTTAAAAG 896
|||||| ||||||||||||||||| |||||||| |||||||| ||||| |||||||| ||
Sbjct 837 TTTTGGTTTTGCAAGTAGAAGAATCCTTTATTCTAATATGATCAGTGGATATGTTAAGAG 896
Query 897 TAGTGATTTAGATAGTGTTTCTGATGTTATACTGCATAGTCTTAAAGAAGATGGGA-AAG 955
| ||||||||||||||||||||||||||||| |||||||||||||||||| | ||| | |
Sbjct 897 TGGTGATTTAGATAGTGTTTCTGATGTTATATTGCATAGTCTTAAAGAAGGT-GGAGAGG 955
Query 956 AATCGGGTTTCGGTGAGGAAACGTACTGTGAATTGGTTAAAGGGTTTATAGAGAGTAAAA 1015
||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 956 AATCGAGTTTCAGTGTGGAAACGTATTGTGAATTGGTTAAAGGGTTTATAGAGAGTAAAA 1015
Query 1016 GCGTTAAGAGTTTAGCGAAAGTGATAATCGAAGCTCAGAAGTTGGAATCTTCTTCCATTG 1075
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||
Sbjct 1016 GCGTTAAGAGTTTAGCGAAAGTGATACTCGAAGCTCAGAAGTTGGAATCTTCTTACGTTG 1075
Query 1076 ATGCTGACAGTTCAGTTGGGTTTGGAATCATTAATGCTTGTGTTAATCTTGGATTCTCGG 1135
|| ||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1076 GTGTTGACAGTTCAGTTGGGTTTGGAATCATAAATGCTTGTGTAAATCTTGGTTTCTCGG 1135
Query 1136 ATAAAGCACATAGTATTCTTGAGGAAATGATTGCTCAAGGAGGAGGATCTGTGGGGATTG 1195
||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 1136 ATAAAGCACATAGTATTCTCGAGGAAATGATTGCTCAGGGAGGAGGATCTGTAGGGATTG 1195
Query 1196 GGGCTTATGTGCCAATCTTGAAAGCTTATTGCAAAGAGTACAGAACAGCTGAAGCTACTC 1255
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GGGTTTATGTGCCAATCTTAAAAGCTTATTGCAAAGAGTACAGAACAGCTGAAGCTACTC 1255
Query 1256 AGCTGGTTACAGAGATCAACAGCTCTGGGCTTCAATTAGATGTCGAGATCTATAACGCTT 1315
|||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1256 AGCTGGTTACAGAGATCAGCAGCTCTGGGCTTCAATTAGACGTCGAGATCTCTAACGCTT 1315
Query 1316 TGATCGAAGCTTCCATGACGAACCAGGATTTCATATCTGCGTTTACATTATTTAGGGATA 1375
|||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 1316 TGATCGAAGCTTCCATGACGAATCAGGATTTTATATCTGCGTTTACATTGTTTAGGGATA 1375
Query 1376 TGAGAGAAACA-AGAGTGGGGGATTTGAAAGGGAGCTACTTAACAATAATGACAGGTCTC 1434
||||||||| | ||||||| ||||||||| ||||| |||||||||||||||||||||||
Sbjct 1376 TGAGAGAAA-ATAGAGTGGTGGATTTGAAGGGGAGTTACTTAACAATAATGACAGGTCTT 1434
Query 1435 CTTGAGAACCAGAGACCTGAGTTAATGGCAGCGTTTCTAGACGAAGTTGTCGAAGACCCA 1494
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1435 CTTGAGAACCAGAGACCTGAGTTAATGGCAGCGTTTCTAGACGAAGTTGTTGAAGACCCT 1494
Query 1495 CGTGTCGAAGTAAATTCCCATGATTGGAATTCGATTATTCATGCGTTCTGTAAATCTGGG 1554
||||| ||||| |||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 1495 CGTGTTGAAGTGAATTCCCATGATTGGAATTCGATTATTCATGCCTTTTGTAAATCCGGG 1554
Query 1555 CGTCTGGAAGATGCAAGGAGGACATTCAGAAGGATGGTTTTCCTCA-GGTATGAGCCGAA 1613
||||||||||||||| |||||||||||||||||||||||||||| | | |||||||| ||
Sbjct 1555 CGTCTGGAAGATGCACGGAGGACATTCAGAAGGATGGTTTTCCT-ACGTTATGAGCCAAA 1613
Query 1614 CAACCAGACATACTTATCCTTGATTAATGGATATGTGAGCGGCGAAAAGTACTTCAACGT 1673
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1614 CAACCAGACATACTTATCTTTGATTAATGGATATGTGAGCGGGGAAAAGTACTTTAACGT 1673
Query 1674 CCTGCTCTTGTGGAACGAGATTAAAGGTAAGATATCGTCGATGGAGGCAGAGAAGAGGTC 1733
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1674 CCTGCTCTTGTGGAACGAGATTAAAGGTAAGATATCGTCGGTGGAGGCAGAGAAGAGGTC 1733
Query 1734 CAAACTAGACCATGCTCTAGTCGATGCGTTCTTGTACGCATTGGTGAAAGGAGGGTTCTT 1793
|| |||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1734 CAGACTAGATCATGCTCTAGTCGATGCATTCTTGTACGCATTGGTGAAAGGAGGATTCTT 1793
Query 1794 TGATGCAGCGATGCAAGTGGTAGAGAAATCTCAGGAGATGAAGATATTTGTGGATAAGTG 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 TGATGCAGCGATGCAAGTGGTAGAGAAATCTCAGGAGATGAAGATATTTGTGGATAAGTG 1853
Query 1854 GAGGTATAAGCAAGCATTCATGGAGACTCACAAGAAACTTAGATTGCCAAAGCTGAGGAA 1913
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1854 GAGGTATAAGCAAGCGTTCATGGAGACTCACAAGAAACTCAGATTGCCAAAGCTGAGGAA 1913
Query 1914 GAGGAACTACAAGAAAATGGAATCTCTTGTTGCCTTCAAGAACTGGGCTG 1963
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 GAGGAACTACAAGAAAATGGAATCTCTTGTTGCCTTCAAGAACTGGGCTG 1963
> AT1G68980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:25932998-25935030 FORWARD LENGTH=2033
Length=2033
Score = 1853 bits (1003), Expect = 0.0
Identities = 1575/1840 (86%), Gaps = 83/1840 (5%)
Strand=Plus/Plus
Query 151 AAAACCCTAACCCAAGAGCAAAAATCCTCCTTTGAATCTACCCTCCACGATTCTTTAACT 210
||||||||||||| | | ||||| || ||||||||||| || |||||| |||| ||| |
Sbjct 86 AAAACCCTAACCCCACACCAAAAGTCTTCCTTTGAATCAACTCTCCACCATTCCCTAA-T 144
Query 211 -ACCCACAACACCGATGAAGCATGGAAGGCT-TTTCGAT-CTCTCACCGCCGCCTCTTCT 267
|||||| |||| ||| |||||||||||| | || |||| || || | ||||| ||||||
Sbjct 145 CACCCACGACACTGATCAAGCATGGAAGG-TCTTCCGATCCT-TCGCTGCCGCTTCTTCT 202
Query 268 CTCCCGGAGAAGCGTCTCATCAATTCTCTTATTACCCATTTGTCC-AATACCGAAGAA-A 325
|||||||| ||||||||| |||||||||| || ||||| |||||| | || | || |
Sbjct 203 CTCCCGGACAAGCGTCTCCTCAATTCTCTCATCACCCACTTGTCCTCCTTCC--ACAACA 260
Query 326 GC-GGTGAAAACA-CT---GCA--CACAGACTCAAGCGAGCTTTTGCTTCCGCTG-CTTA 377
| | | |||||| || || |||||||||||||| || |||| |||| | | ||||
Sbjct 261 -CAGATCAAAACACCTCCCTCAGGCACAGACTCAAGCGTGCCTTTGTTTCCAC-GACTTA 318
Query 378 TGTAATAGAGAAAGATCCGATTTTGCTTGAGTTTGAGACTGTTCGTACGCTTATGGAGTC 437
|||||| |||||||||||||||||||||||||||||||| || |||||| || | |||||
Sbjct 319 TGTAATCGAGAAAGATCCGATTTTGCTTGAGTTTGAGACCGTCCGTACGGTTCTCGAGTC 378
Query 438 GATGAAACTTGCGAAAGCTGCAGGGCCAGCGTTGGCTTTAGTGAAGTGTATGTTTAAAAA 497
||||||||| ||||||||| | |||||||| |||||||| ||| ||||||||||||||||
Sbjct 379 GATGAAACTAGCGAAAGCTTCCGGGCCAGCATTGGCTTTGGTGGAGTGTATGTTTAAAAA 438
Query 498 CAGGTACTTTGTTCCTTTTGATCTCTGGGGGCATTTGA-TTATCGATATCTGTAGAGAAA 556
||||||||||||||||||||||||||||||| |||| | |||||||| ||||| | ||||
Sbjct 439 CAGGTACTTTGTTCCTTTTGATCTCTGGGGGGATTT-ACTTATCGATGTCTGTCGTGAAA 497
Query 557 ATGGAAGCTTGGCTGCGTTTCTTAAGGTGTTTAAGGAAAGTTGTAGAATTGCAGTAGATG 616
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 498 ATGGAAGCTTGGCTGCGTTTCTTAAGGTGTTTAGGGAAAGTTGTAGAATTGCAGTAGATG 557
Query 617 AGAAGCTTGATTTTATGAAACCGGATTTGGTAGCTAGTAATGCGGCTCTTGAAGCGTGTT 676
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 558 AGAAGCTTGATTTTATGAAACCGGATTTGGTAGCGAGTAATGCAGCTCTTGAAGCGTGTT 617
Query 677 GTCGGCAGTTGGAATCTTTGGCTGATGCTGAAAATGTGATTGAATCTATGGCTGTTTTGG 736
|| ||||| |||||||||||||||||||||| ||| ||||||||||||||| |||||| |
Sbjct 618 GTAGGCAGATGGAATCTTTGGCTGATGCTGAGAATCTGATTGAATCTATGGATGTTTTAG 677
Query 737 GTGTGAAGCCTGATGAATTGAGCTTTGGGTTTCTTGCTTATTTGTATGCGAGTAAGGGGC 796
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 678 GTGTGAAGCCTGATGAATTGAGCTTTGGGTTTCTTGCTTATTTGTATGCGAGGAAGGGGC 737
Query 797 TTCGAGAGAAGATAAGTGAGCTTGAGAATTTGATGGATGGTTTTGGGTTTGCAAGTAGAA 856
||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 738 TTCGAGAGAAGATTAGTGAGCTTGAGGATTTGATGGATGGTTTAGGGTTTGCAAGTAGAA 797
Query 857 GAATACTTTATTCCAATATGATTAGTGGGTATGTTAAAAGTAGTGATTTAGATAGTGTTT 916
|||| |||||||||| |||||| ||||| |||||||| ||| ||||||||||||||| ||
Sbjct 798 GAATTCTTTATTCCAGTATGATCAGTGGATATGTTAAGAGTGGTGATTTAGATAGTGCTT 857
Query 917 CTGATGTTATACTGCATAGTCTTAAAGAAGATGG-GAAAGAATCGGGTTTCGGTGAGGAA 975
|||||||||||||| ||||||||||| || ||| ||| | ||| ||||| ||||||||
Sbjct 858 CTGATGTTATACTGTGTAGTCTTAAAGGAGTTGGAGAA-GCCTCGAGTTTCAGTGAGGAA 916
Query 976 ACGTACTGTGAATTGGTTAAAGGGTTTATAGAGAGTAAAAGCGTTAAGAGTTTAGCGAAA 1035
||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||
Sbjct 917 ACGTACTGTGAATTGGTTAGAGGGTTCATAGAGAGTAAAAGCGTTGAGAGTTTAGCGAAA 976
Query 1036 GTGATAATCGAAGCTCAGAAGTTGGAATCT-TCTTCCATTGATGCTGACAGTTCAGTTGG 1094
|||| |||||||||||||||||||||||| | | ||| ||||| || | | ||||| ||
Sbjct 977 CTGATCATCGAAGCTCAGAAGTTGGAATCTATGT-CCACTGATGTTGGCGGATCAGTGGG 1035
Query 1095 GTTTGGAATCATTAATGCTTGTGTTAATCTTGGATTCTCGGATAAAGCACATAGTATTCT 1154
|||||||||| | ||||||||||| || || ||||| |||| |||| | |||||||
Sbjct 1036 GTTTGGAATCGTAAATGCTTGTGTCAAGCTCGGATTTTCGGGTAAA--A----GTATTCT 1089
Query 1155 TGAGGAAATGATTGCTCAAGGAGGAGGATCTGTG-GGGATTGGGGCT-TATGTGCCAATC 1212
|| ||| ||| |||||| || | |||||||| | |||||||| | | |||||||| |||
Sbjct 1090 CGATGAATTGAATGCTCA-GG-G-AGGATCTG-GAGGGATTGGTG-TGTATGTGCCGATC 1144
Query 1213 TTGAAAGCTTATTGCAAAGA-GTACAGAACAGCTGAAGCTACTCAGCTGGTTACAGAGAT 1271
||||| |||||||||||||| | ||||||| |||||||||||||||| |||||||||||
Sbjct 1145 TTGAAGGCTTATTGCAAAGAAGG-CAGAACATCTGAAGCTACTCAGCTTGTTACAGAGAT 1203
Query 1272 CAACAGCTCTGGGCTTCAATTAGATGTCGAGATCTATAACGCTTTGATCGAAGCTTCCAT 1331
|| ||||||||||||||||||||| || |||| ||||||| || ||||||||||||||||
Sbjct 1204 CAGCAGCTCTGGGCTTCAATTAGACGTTGAGACCTATAACACTATGATCGAAGCTTCCAT 1263
Query 1332 GACGAACCAGGATTTCATATCTGCGT-TTACATTATTTAGGGATATGAGAGAAACAAGAG 1390
|||||| || |||||| ||||||| | ||||||| |||||||||||||||||||||||||
Sbjct 1264 GACGAAACATGATTTCCTATCTGC-TCTTACATTGTTTAGGGATATGAGAGAAACAAGAG 1322
Query 1391 TGGGGGATTTGAAAGGGA-GCTACTTAACAATAATGACAGGTCTCCTTGAGAACCAGAGA 1449
||| |||| ||||| | | ||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1323 TGGCGGATCTGAAAAG-ATGCTACTTAACAATAATGACTGGTCTCCTTGAGAATCAGAGA 1381
Query 1450 CCTGAGTTAATGGCAGCGTTTCTAGACGAAGTTGTCGAAGACCCACGTGTCGAAGTAAAT 1509
|||||||||||||||| |||| | || |||||| | ||||| ||||| || ||||| ||
Sbjct 1382 CCTGAGTTAATGGCAGAGTTTGTGGAGGAAGTTATGGAAGATCCACGCGTAGAAGTGAAG 1441
Query 1510 TCCCATGATTGGAATTCGATTATTCATGCGTTCTGTAAATCTGGGCGTCT-GGAAGATGC 1568
||||||||||||||||||||||| ||||| || ||||||||||| || || ||| |||||
Sbjct 1442 TCCCATGATTGGAATTCGATTATCCATGCCTTTTGTAAATCTGGTCGCCTAGGA-GATGC 1500
Query 1569 AAGGAGGACATTCAGAAGGATGGTTTTCCT-CAGGTATGAGCCGAACAACCAGACATACT 1627
|| ||| ||||||||||||||| |||||| ||| ||||||||||| |||||||||||||
Sbjct 1501 AAAGAGTACATTCAGAAGGATGACTTTCCTTCAG-TATGAGCCGAATAACCAGACATACT 1559
Query 1628 TATCCTTGATTAATGGATATGTGAGCGGCGAAAAGTACTTCAACGTCCTGCTCTTGTGGA 1687
| || ||||| |||||||| |||||| |||| ||||||||| | || || | | | |
Sbjct 1560 TGTCGTTGATCAATGGATACGTGAGCTGCGAGAAGTACTTCGAGGTGGTGGT-TA-T--A 1615
Query 1688 ACGAGATTAAAGGTAAGATATCGTCGATGGAGGCAGAGAAGAGGTCCAAACTAGACCATG 1747
| || || | | | | || | | | || |||| || | ||||| || ||||
Sbjct 1616 T-G-GA--AA-G--A-G-T-TCAA--A-G-A--CA-AGAA-AG--CAAAACTGGAGCATG 1655
Query 1748 CTCTAGTCG-ATGCGTTCTTGTACGCATTGGTGAAAGGAGGGTTCTTTGATGCA-G-CGA 1804
|||| | || ||||||||||| | |||||||| |||||||| ||||||| ||| | ||
Sbjct 1656 CTCTTG-CGGATGCGTTCTTGAATGCATTGGTCAAAGGAGGCTTCTTTG--GCACGGCGT 1712
Query 1805 TGCAAGTGGTAGAGAAATCTCAGGAGATGAAGATATTTGTGGATAAGTGGAGGTATAA-G 1863
|||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||| |
Sbjct 1713 TGCAAGTGATAGAGAAATGTCAGGAGATGAAGATATTCGTGGATAAGTGGAGGTATAAAG 1772
Query 1864 CAAGCATTCATGGAGACTCACAAGAAACTTAGATTGCCAAAGCTGAGGAAGAGGAAC-TA 1922
||| | |||||||||||||| ||||| || |||||||||||| ||||||||||||| |
Sbjct 1773 CAA-CGTTCATGGAGACTCAAAAGAATCTCAGATTGCCAAAGTTGAGGAAGAGGAAGATG 1831
Query 1923 CAAGAAAATGGAATCTCTTGTTGCCTTCAAGAACTGGGCT 1962
|||||||| || | ||||| |||||| ||||| ||||||
Sbjct 1832 -AAGAAAATTGAGTTTCTTGATGCCTTTAAGAATTGGGCT 1870
> AT1G69280.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G03630.1);
Has 885 Blast hits to 474 proteins in 40 species: Archae -
0; Bacteria - 4; Metazoa - 731; Fungi - 9; Plants - 68; Viruses
- 0; Other Eukaryotes - 73 (source: NCBI BLink). | chr1:26045160-26048190
REVERSE LENGTH=2743
Length=2743
Score = 1458 bits (789), Expect = 0.0
Identities = 911/967 (94%), Gaps = 20/967 (2%)
Strand=Plus/Plus
Query 2051 CTATGGAAACGAATCACAAGAAAGGAAAAACTAGAAAGGCTTATCATCTAAAGAAGCATA 2110
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1409 CTATGGAAACGAATCACAAGAAAGGAAAAAATAGAAAGGCTTATCATCTAAAGAAGCATA 1468
Query 2111 GAAAATCAGATAATAATAAGAGTTTCGATCCAAGACCAACGATCAAAGAAGTGAATGATG 2170
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1469 GAAAATCAGATAATAATAAGAGTTTTGAGCCAAGACCAACGATCAAAGAAGTGAATGATG 1528
Query 2171 AGAAGCCGGTTTTGTTCCAATTGGGGAGCATTGCTAGTTATGGGGTCAGTGATGTTCGTC 2230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 AGAAGCCGGTTTTGTTCCAATTGGGGAGCATTGCTAGTTATGGGGTCAGTGATGTTCGTC 1588
Query 2231 TCGAGGCAGATCCAGAGATCACCACTAGAAGATCCACATCTCTTTCCTTGTCTTCATTGT 2290
|||||| |||||||||||||||||| |||||||||||| || | ||| || | ||||
Sbjct 1589 TCGAGGAAGATCCAGAGATCACCACCAGAAGATCCACA--TC--T-CTT-TC--C-TTGT 1639
Query 2291 CTCCAACCTCTTCAGGGGATATACTCGAGATCAATGCAAAAGAAAGGAAATCCAGCTTAT 2350
||||||||||||||| |||||||| ||||||||||||||||| ||||||||| | |||||
Sbjct 1640 CTCCAACCTCTTCAGAGGATATACACGAGATCAATGCAAAAGGAAGGAAATCAAACTTAT 1699
Query 2351 CTTTCGATAGTAGCGTACACAATAAGGAGCTCTTAAGCCTTTCTTCTAAATTATGCGAGT 2410
|||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| |||||
Sbjct 1700 CTTTCGATAGTAGCCTACACAATAAGGAGCTCTTTAGCCTGTCTTCTAAATTATTCGAGT 1759
Query 2411 TACAAGGTTCATCAGACACACCAGGGTCACAAGTGTCTGGTGTAACTCATGCTTCAGTGG 2470
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1760 TACAAGGTTCATCAGACACACCAGGGTCACAAGTGTCTGGTGTAACGAATGCTTCAGTGG 1819
Query 2471 AGCCTTTGCTTATGTCGCCTTCTG-TTCAAATGATGGATAGAGAAGGATCTGATCAACCT 2529
||||||||||| | || ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1820 AGCCTTTGCTTTTATCTCCTTC-GATTCAAATGATGGATAGAGAAGGATCTGATCAACCT 1878
Query 2530 CAGAGAAACTCGTTACCGACCTTGGAGAAGAATTTGAGCACACTTTCAAATGATTCTCTG 2589
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1879 GAGAGAAACTCGTTACCTACCTTGGAGAAGAATTTGAGCACACTTTCAAATGATTCTCTG 1938
Query 2590 TTTAGTCTCAGCATAGGTGATAACGCGATAGCAAGAGATGAGTTGTTTAGTTACCGTGAT 2649
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1939 TTTAGTCTCAGCATAGGTGATAACACGATAGCAAGAGATGAGTTGTTTAGTTACCGTGAT 1998
Query 2650 TTCAAGTCTGGAGAGATCACAAAATCGGGAGAGCTGTTATCGTTCTGCCCTGCTACTCAT 2709
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1999 TTCAAGTCTGGAGAGATTACAAAATCGGGAGAGCTGTTATCGTTCTGCCCTGCTATTCAT 2058
Query 2710 GGTCCGGCTGATTCTTCTGATCTAGGAAAGAGCTTTGATATGGAGGACAAAGCGAGTGGA 2769
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2059 GGTCCGGCTGATTCTTCTGATCTAGGAAAGAGCTTTGATATGGAGGACAAAGCGAGTGGC 2118
Query 2770 GAATGTGAGGATAAGTCATCGAACTCAAATGTATCGTGGAGGAACATTGGAGATTGCAAT 2829
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2119 GAATGTGAGGATAAGTCATCGAACTCAAATGTATCGTGGAGGAACATCGGAGATTGCAAT 2178
Query 2830 AACTCAGACGAAGCTCCGAGCAGCACGCAGTCATTTTCATATCCAATAACgaaaaagaag 2889
|||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2179 AACTCAGACGAAACACCAAGCAGCACACAGTCATTTTCATATCCAATAACGAAAAAGAAG 2238
Query 2890 aagaaaaaaaagaaggcaataaagaagaagaTGACACAGCAGCAGCAACAG-A-A-G-A- 2944
||||| |||||||| |||| ||||||||||||||||||||||||||||||| | | | |
Sbjct 2239 AAGAAGAAAAAGAAAGCAACAAAGAAGAAGATGACACAGCAGCAGCAACAGCAGAAGCAG 2298
Query 2945 A-GA-G--ATGTTCTTGGTTGTGTTGCAAGAACACTGGACCGTGCTTCTCCTGCTGCAGA 3000
| || | ||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 2299 AAGAAGCGATGTTCTTGGTTGTGTTGCAAGAACACTGGACCTTGTTTCTCCTGCTGCAGA 2358
Query 3001 TGGCCAA 3007
| |||||
Sbjct 2359 TTGCCAA 2365
Score = 1277 bits (691), Expect = 0.0
Identities = 769/807 (95%), Gaps = 4/807 (0%)
Strand=Plus/Plus
Query 1159 GAAATGATTGCTCAAGGAGGAGGATCTGTGGGGATTGGGGCTTATGTGCCAATCTTGAAA 1218
|||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| |||
Sbjct 1 GAAATGATTGCTCAGGGAGGAGGATCTGTAGGGATTGGGGTTTATGTGCCAATCTTAAAA 60
Query 1219 GCTTATTGCAAAGAGTACAGAACAGCTGAAGCTACTCAGCTGGTTACAGAGATCAACAGC 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 GCTTATTGCAAAGAGTACAGAACAGCTGAAGCTACTCAGCTGGTTACAGAGATCAGCAGC 120
Query 1279 TCTGGGCTTCAATTAGATGTCGAGATCTATAACGCTTTGATCGAAGCTTCCATGACGAAC 1338
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 TCTGGGCTTCAATTAGACGTCGAGATCTCTAACGCTTTGATCGAAGCTTCCATGACGAAT 180
Query 1339 CAGGATTTCATATCTGCGTTTACATTATTTAGGGATATGAGAGAAACA-AGAGTGGGGGA 1397
|||||||| ||||||||||||||||| ||||||||||||||||||| | ||||||| |||
Sbjct 181 CAGGATTTTATATCTGCGTTTACATTGTTTAGGGATATGAGAGAAA-ATAGAGTGGTGGA 239
Query 1398 TTTGAAAGGGAGCTACTTAACAATAATGACAGGTCTCCTTGAGAACCAGAGACCTGAGTT 1457
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 TTTGAAGGGGAGTTACTTAACAATAATGACAGGTCTTCTTGAGAACCAGAGACCTGAGTT 299
Query 1458 AATGGCAGCGTTTCTAGACGAAGTTGTCGAAGACCCACGTGTCGAAGTAAATTCCCATGA 1517
||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||
Sbjct 300 AATGGCAGCGTTTCTAGACGAAGTTGTTGAAGACCCTCGTGTTGAAGTGAATTCCCATGA 359
Query 1518 TTGGAATTCGATTATTCATGCGTTCTGTAAATCTGGGCGTCTGGAAGATGCAAGGAGGAC 1577
||||||||||||||||||||| || |||||||| |||||||||||||||||| |||||||
Sbjct 360 TTGGAATTCGATTATTCATGCCTTTTGTAAATCCGGGCGTCTGGAAGATGCACGGAGGAC 419
Query 1578 ATTCAGAAGGATGGTTTTCCTCA-GGTATGAGCCGAACAACCAGACATACTTATCCTTGA 1636
||||||||||||||||||||| | | |||||||| |||||||||||||||||||| ||||
Sbjct 420 ATTCAGAAGGATGGTTTTCCT-ACGTTATGAGCCAAACAACCAGACATACTTATCTTTGA 478
Query 1637 TTAATGGATATGTGAGCGGCGAAAAGTACTTCAACGTCCTGCTCTTGTGGAACGAGATTA 1696
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 TTAATGGATATGTGAGCGGGGAAAAGTACTTTAACGTCCTGCTCTTGTGGAACGAGATTA 538
Query 1697 AAGGTAAGATATCGTCGATGGAGGCAGAGAAGAGGTCCAAACTAGACCATGCTCTAGTCG 1756
||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||
Sbjct 539 AAGGTAAGATATCGTCGGTGGAGGCAGAGAAGAGGTCCAGACTAGATCATGCTCTAGTCG 598
Query 1757 ATGCGTTCTTGTACGCATTGGTGAAAGGAGGGTTCTTTGATGCAGCGATGCAAGTGGTAG 1816
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 599 ATGCATTCTTGTACGCATTGGTGAAAGGAGGATTCTTTGATGCAGCGATGCAAGTGGTAG 658
Query 1817 AGAAATCTCAGGAGATGAAGATATTTGTGGATAAGTGGAGGTATAAGCAAGCATTCATGG 1876
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 659 AGAAATCTCAGGAGATGAAGATATTTGTGGATAAGTGGAGGTATAAGCAAGCGTTCATGG 718
Query 1877 AGACTCACAAGAAACTTAGATTGCCAAAGCTGAGGAAGAGGAACTACAAGAAAATGGAAT 1936
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGACTCACAAGAAACTCAGATTGCCAAAGCTGAGGAAGAGGAACTACAAGAAAATGGAAT 778
Query 1937 CTCTTGTTGCCTTCAAGAACTGGGCTG 1963
|||||||||||||||||||||||||||
Sbjct 779 CTCTTGTTGCCTTCAAGAACTGGGCTG 805
Score = 137 bits (74), Expect = 5e-31
Identities = 74/74 (100%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 3008 ATGGCCAAGTTGTGATTACAATTCTTCTTGTGGCTGGCTCTTCTGCTGCCATTGGAGCTG 3067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2430 ATGGCCAAGTTGTGATTACAATTCTTCTTGTGGCTGGCTCTTCTGCTGCCATTGGAGCTG 2489
Query 3068 TTGGAGTTGCTGTT 3081
||||||||||||||
Sbjct 2490 TTGGAGTTGCTGTT 2503
Score = 132 bits (71), Expect = 2e-29
Identities = 79/83 (95%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 1968 CAAAATTGTATTAAGTTTCAATTTGGTTTATAGACAGAGAAGAATCGTGAAGAGAAGATT 2027
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1262 CAAAATTGTATTAAGTTTCATTTTGGTTTATAGACAGAGAAGAATCGTGAAGAGAAGATT 1321
Query 2028 ACTTACGGAGGGAGCCATTGCGG 2050
||| || ||||| ||||||||||
Sbjct 1322 ACTAACAGAGGGGGCCATTGCGG 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 155617857186
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5