BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339179
Length=2136
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69450.1 | Symbols: | Early-responsive to dehydration stres... 3365 0.0
> AT1G69450.1 | Symbols: | Early-responsive to dehydration stress
protein (ERD4) | chr1:26107120-26110148 REVERSE LENGTH=2278
Length=2278
Score = 3365 bits (1822), Expect = 0.0
Identities = 2026/2126 (95%), Gaps = 8/2126 (0%)
Strand=Plus/Plus
Query 1 ATGCTTTTGTCTGCACTTCTTATGTCTGTTGGGATAAACTCTTGCCTATGTGTATTGTTC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 143 ATGCTTTTGTCTGCACTTCTTATGTCTGTTGGGATAAACTCTTGCCTATGTGTATTACTC 202
Query 61 TTCATACTTTACTCTGTACTGAGGAAGCAGCCACGCAACTACGAGGtttttttACCTCGT 120
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 203 TTCATTCTTTACTCTGTACTGAGGAAGCAGCCACGAAACTACGAGGTTTTTTTACCTCG- 261
Query 121 C-GACTCGCAG-ATGGGACGTCTAAACGTAGACGTAACAAAGTGGCAAGGTATATACCTT 178
| ||||||| | ||||||||| |||||||||||| |||||||| ||||||||||||||||
Sbjct 262 CAGACTCGC-GAATGGGACGTATAAACGTAGACGCAACAAAGTAGCAAGGTATATACCTT 320
Query 179 CTGTTAAATGGATTTGGAAATCATGGAGGCCAACAGAAAAGGAACTGATGGAATCATCTG 238
|| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 321 CTCTTAAATGGATTTGGAAATCATGGAGACCAACAGAAAAGGAACTTATGGAATCATCTG 380
Query 239 GCTTGGATGGTGTTGTGTTTATGAGAATGATTACTTTCAGTTTGAAAGTGTTCTTGTTTG 298
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 381 GCTTGGATGGTGTTGTGTTTATGAGAATGATCACTTTTAGTTTGAAAGTGTTCTTGTTTG 440
Query 299 CTGGGATCATTGGTGTTTTTGTTCTCTTGCCTGTGAACTGCTTTGGAGATCAACTTACAG 358
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 CTGGTATCATTGGTGTTTTTGTTCTCTTGCCTGTGAACTGCTTTGGAGATCAACTTACAG 500
Query 359 TGATTGACTACGCCGACTGGTCAGCGAATTCTTTGGATCTGTTTTCTGTTGCAAACCTCA 418
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 501 TGATTGATTACGCTGACTGGTCAGCCAATTCTTTGGATCTGTTTTCTGTTGCAAACCTCA 560
Query 419 AAATCCGCTCACAATGGCTATGGGTTCACTTTGGAGCTATATATCTTGTGACAGCATTTG 478
|| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 561 AAGTCCGCTCACAATGGCTATGGGTTCACTTTGGAGCTATATATCTTGTGACTGTATTTG 620
Query 479 TCTGCTGTCTTCTTTACTTTGAATTTAGATATGTTGCCTTGAAAAGGATTGAGCATTTCT 538
| ||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||
Sbjct 621 TTTGCTGTCTTCTTTACTTTGAATTCAGATATATTGCGTTGAAAAGGATTGAGCATTTCT 680
Query 539 ATTCATCCAAACCTCAGCCAGAACAGTTTACCATATTGGTTCGCAATATTCCCTCTACAG 598
||||||| |||||| |||||||||||||||| ||||||||||| ||||| |||||| |||
Sbjct 681 ATTCATCTAAACCTAAGCCAGAACAGTTTACAATATTGGTTCGAAATATCCCCTCTTCAG 740
Query 599 ATGGAAGCAGTGTGAGCGACACTGTTGATAGGTTCTTTGGAGAAAACCATTTTTCTACTT 658
|||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| |
Sbjct 741 ATGGAAGCAGTGTGAGCGACACTGTTGATAGGTTCTTTGGTGAAAATCATTCCTCTACCT 800
Query 659 ACCTGTCTCATGTGGTTATCCATCGAACAAGTAAACTACGGAGTGTCGTTGATAAGGCTA 718
| | |||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 801 ATTTTTCTCATGTGGTTATCCATCGAACAAGTAAACTCCGAAGTGTCGTTGATAAGGCTA 860
Query 719 AAAAGTTATATAAACAAGTGAAACATAAGAAGCCAGTTAAGAAGAAGCCAATGAGATTCT 778
|||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 861 AAAAGTTATATAAAGAAGTGAAACATAAGAAGCCAGTTAAAAAGACGCCAATGAGATTCT 920
Query 779 TCAGTCGCAGAGACACTCCTGAGGGTCACTATGAGAGCGTGTTACAGGAAATGGAACAGA 838
||||||| | ||||| | ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 921 TCAGTCGTAAAGACAATACTGAGGGTCACTATGAGAGTGTGTTACAGGAAATGGAACAGA 980
Query 839 ACATACGATTGGGGCAAGCTGAAGTTTCTGCACCTGGAAAAGAAGTTCGAGCTGCTTTTG 898
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 981 ACATACGATTGGGGCAAGCTGAAGTTTCAGCACCTGGAAAGGAAGTTCGAGCTGCTTTTG 1040
Query 899 TATCATTCAAGTCTCGATATGGTGCTGCAACGGCACTCCACATGCCGCAATCAATCAACC 958
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1041 TATCATTCAAGTCTCGATATGGTGCTGCAACAGCACTCCACATGCCACAATCAATCAACC 1100
Query 959 CCACTTACTGGCTCACAGAACCAGCACCAGAACCTCATGACGTTCACTGGCCTTTCTTCT 1018
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1101 CTACTTACTGGCTCACAGAACCAGCACCAGAACCTCATGACGTACACTGGCCTTTCTTCT 1160
Query 1019 CTGCATCATTTATGCAGAAATGGCTCGCTAAAATTCTGGTTGTATTCGCTTGTCTCCTCC 1078
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1161 CTGCATCATTTATGCAGAAATGGCTTGCTAAAATTCTGGTTGTGTTCGCTTGTCTCCTCC 1220
Query 1079 TTACTATCTTGTTTCTTGTTCCAGTAGTACTTGTCCAAGGTCTCACCAA-CTTGCCTGCA 1137
|||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1221 TTACTATCTTATTTCTTGTTCCAGTAGTACTTGTCCAAGGTCTCACCAACCTT-CCTGCA 1279
Query 1138 CTAGAATTTATGTTCCCGTTCTTGACATTAATTCTATCAATGAAAGTTGTAAGTCAAATA 1197
|||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 1280 CTAGAATTTATGTTCCCGTTCTTGTCATTGATCCTATCAATGAAAGTTGTAAGTCAAATA 1339
Query 1198 ATAACTGGATACCTTCCAAGTCTTATACTTCAGACGTCTCTGAAAGTCGTACCTCCCATC 1257
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |
Sbjct 1340 ATAACTGGATACCTTCCAAGTCTTATACTTCAGACATCTCTCAAAGTCGTACCTCCAACC 1399
Query 1258 ATGGAGTTTCTCTCTTCTATCCAAGGGCACATTTGCCACAGCGATATACAAAAGAGTGCT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 ATGGAGTTTCTCTCTTCTATCCAAGGGCACATTTGCCACAGCGATATACAAAAGAGTGCT 1459
Query 1318 TGTAACAAGGTGATCTGGTTCACAATATGGAATGTGTTTTTTGCAACTGTTTTCTCTGGT 1377
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1460 TGTAACAAGGTGATCTGGTTCACTATATGGAATGTGTTTTTCGCAACTGTTTTCTCTGGA 1519
Query 1378 TCAGCCTTCTACAAGCTTTCTGTAATTCTCGATCCAAAGCAAATTCCGGTCAAGTTGGCT 1437
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1520 TCAGCCTTCTACAAGCTTTCTGTAATTCTCGATCCAAAGCAAATCCCGCTCAAGTTGGCT 1579
Query 1438 GTGGCTGTTCCGGCTCAGGCTTCGTTTTTCATCGCTTATGTTGTGACAACAGGGTGGACA 1497
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1580 GTGGCTGTTCCAGCTCAGGCTTCGTTTTTCATCGCTTATGTTGTGACAACAGGATGGACA 1639
Query 1498 GATACTCTGACTGAACTCTTCCGTGTAGTTCCCTTCATGGTTAGTTACATAAAAAGATCA 1557
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1640 GATACTCTGACTGAACTCTTCCGTGTAGTTCCCTTCATGGTCAGTTACATAAAAAGATCT 1699
Query 1558 TTTGAACCGTCAGATGACAATGAATTTGTTGTCCCGCCAATGCGGTACCACAGAGACACC 1617
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1700 TTTGAACCGTCAGATGAAAATGAATTTGTTGTACCGCCAATGCGGTACCACAGAGACACT 1759
Query 1618 CCTAGAGTTCTCTTCTTTGGGCTTCTTGGGATTACATACTTCTTCTTAGCTCCATTGATT 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1760 CCTAGAGTTCTCTTCTTTGGGCTTCTTGGGATTACATACTTCTTCTTAGCTCCATTGATT 1819
Query 1678 CTTCCTTTCATCCTTCTCTACTTTTGTC-TTGCATACATCATCTACCGAAACCAGTTTAT 1736
||||||||||||||| | |||||| || |||||||||||||||||||||||||||||||
Sbjct 1820 CTTCCTTTCATCCTTTTATACTTTA-TCCTTGCATACATCATCTACCGAAACCAGTTTAT 1878
Query 1737 GAACGTGTATGCTCCAAAGTTTGATACGGGCGGGATGTTTTGGCCAATGATACACTATAC 1796
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1879 GAATGTGTATGCTCCAAAGTTTGATACGGGTGGAATGTTTTGGCCAATGATACACTATAC 1938
Query 1797 GATGATATTCTCTCTTGTACTTATGCAAGCAATTGCGATCGGTCTATTTGCGCTAAAGAA 1856
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1939 GATGATATTCTCTCTTGTACTTATGCAAGCAATTGCAATCGGTCTATTTGCGCTAAAGAA 1998
Query 1857 GATGGAACTAGCTACATACTTGCTTGTTCCTCTTCCCGTTTGTACTCTTCTCTTTAACGA 1916
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1999 GATGGAACTAGCTACATACTTGCTTGTCCCTCTTCCCGTTTTTACTCTTCTCTTTAACGA 2058
Query 1917 GTTCTGTCGTAAACGCTTCATGCCTATATTCACTGCTTATCCTGCTGAGGTGTTGACAAA 1976
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2059 GTTCTGTCGTAAACGCTTCATGCCTATATTCACTGATTATCCTGCTGAGGTGTTGACAAA 2118
Query 1977 GAGAGATAAGGAAGATCGAAACGATCCAAGAATGCCTGAGTTTTACAATAACTTGGTCAG 2036
|||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||
Sbjct 2119 GAGAGATAAGGAAGATAGAAACGATCCAACAATGCCCGAGTTTTACAATAACTTGGTCAG 2178
Query 2037 TGCATACCAAGATCCTGCTCTGCTCCCACTTCGATTCTCAGGATCAGGAAGCAGAAATGA 2096
||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 2179 TGCGTACAAAGATCCTGCTCTGCTCCCACTTAGATTCTCAGGATCAGGAAGCAGAAACGA 2238
Query 2097 TAGCCTCACTAGTCCTCTTCTCTCTT 2122
||||||||||||||||||||||||||
Sbjct 2239 TAGCCTCACTAGTCCTCTTCTCTCTT 2264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105923149950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5