BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339208
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69740.1 | Symbols: HEMB1 | Aldolase superfamily protein | c... 2028 0.0
> AT1G69740.1 | Symbols: HEMB1 | Aldolase superfamily protein |
chr1:26231804-26234963 FORWARD LENGTH=1680
Length=1680
Score = 2028 bits (1098), Expect = 0.0
Identities = 1230/1295 (95%), Gaps = 4/1295 (0%)
Strand=Plus/Plus
Query 1 ATGGCTACTACACCAATCTTTAATGCCTCGTGTAGCTTTCCATCGACCAGAGGAATCGAT 60
|||||||||||||| ||||||||||| || || |||||||| ||||| ||||||||||||
Sbjct 138 ATGGCTACTACACCCATCTTTAATGCTTCTTGCAGCTTTCCTTCGACTAGAGGAATCGAT 197
Query 61 TGCAAGAA-CTATATTGGTCTGAGATCGAATGTGAGTAAAGTGAGTGTGGCTTCTTCTCG 119
||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 198 TGCAA-AAGCTATATTGGTCTGAGATCGAATGTGAGTAAAGTGAGTGTTGCTTCTTCTCG 256
Query 120 AATTGCAACTAGTCAACGTCGTAATCTTGTCATAAGAGCTAGTGAATCCGGCAATGGACA 179
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 257 CATTGCAACTAGTCAACGTCGTAATCTTGTCGTAAGAGCTAGTGAATCCGGCAATGGACA 316
Query 180 TGCTAAGAAGCTTGGAATGAGTGATGCTGAGTGTGAAGCCGCTGTTGCTGCTGGAAATGT 239
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 317 TGCTAAGAAGCTTGGAATGAGTGATGCTGAGTGTGAAGCTGCCGTTGCTGCTGGAAATGT 376
Query 240 TCCTGAAGCTCCTCCGGTTCCACCTAAACCCGCTGCTCCCGTTGGTACACCGATAATTCA 299
|||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |
Sbjct 377 TCCTGAAGCTCCTCCGGTTCCACCTAAACCGGCTGCTCCGGTTGGGACACCGATAATTAA 436
Query 300 GCCTCTTAATCTAAGCAGACGCCCACGTCGTAACCGTGCTTCCCCTGTGGCGCGAGCCGC 359
|||||||||||||||| ||||||||||||||||||| ||||||||||| | |||| ||
Sbjct 437 GCCTCTTAATCTAAGCCGACGCCCACGTCGTAACCGCGCTTCCCCTGTTACTAGAGCTGC 496
Query 360 CTTTCAGGAAACTGATATCTCCCCTGCAAATTTTGTATACCCACTTTTCATTCATGAAGG 419
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 497 CTTTCAGGAAACTGATATCTCCCCTGCAAATTTTGTATATCCACTTTTCATTCATGAAGG 556
Query 420 TGAGGAAGACACGCCTATTGGAGCTATGCCCGGTTGCTATAGACTTGGCTGGAGGCATGG 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 557 TGAGGAAGACACGCCTATTGGAGCTATGCCCGGTTGCTACAGACTTGGCTGGAGGCATGG 616
Query 480 TCTTGTACAAGAGGTTGCAAAGGCTCGAGCTGTTGGTGTAAACAGTATCGTCTTGTTCCC 539
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 617 TCTTGTACAAGAGGTTGCAAAGGCTCGAGCTGTTGGGGTAAACAGTATCGTTTTGTTCCC 676
Query 540 TAAAGTTCCTGAGGCTTTGAAGAATCCAACAGGAGATGAGGCATACAATGACAATGGTTT 599
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 677 TAAAGTTCCTGAGGCTTTGAAGAATTCAACAGGGGATGAGGCATACAATGACAATGGTTT 736
Query 600 GGTGCCTCGAACAATTCGTCTTCTTAAAGACAAATATCCTGATCTTGTTATCTACACTGA 659
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 737 GGTGCCTCGAACAATTCGTCTTCTTAAAGACAAATATCCTGATCTTATTATCTACACTGA 796
Query 660 TGTGGCTTTGGATCCCTACTCATCCGATGGTCACGATGGGATAGTTAGAGAGGATGGTGT 719
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 797 TGTGGCTTTGGATCCTTACTCATCTGATGGTCACGATGGGATAGTTAGAGAGGATGGTGT 856
Query 720 AATTATGAATGACGAAACGGTACACCAGCTGTGTAAACAAGCTGTTTCCCAGGCCCGAGC 779
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 857 AATTATGAATGACGAAACAGTACACCAGCTCTGTAAACAAGCTGTTTCCCAGGCTCGAGC 916
Query 780 TGGAGCGGACGTTGTCAGTCCGAGTGATATGATGGATGGGCGAGTAGGTGCAATCCG-TG 838
||| || ||||| || ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 917 TGGTGCTGACGTAGTTAGTCCGAGTGACATGATGGATGGGCGAGTAGGTGCAATCCGCT- 975
Query 839 CAGCTCTTGATGCTGAAGGATTTCAAAACGTCTCCATCATGTCCTACACAGCCAAGTATG 898
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 976 CAGCTCTTGATGCTGAAGGATTTCAAAACGTCTCCATCATGTCATACACAGCCAAGTATG 1035
Query 899 CAAGTTCGTTTTACGGTCCTTTCCGTGAAGCCCTGGACTCTAATCCACGTTTCGGAGACA 958
|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1036 CAAGTTCGTTTTACGGTCCTTTCCGTGAAGCCCTGGACTCAAACCCGCGTTTCGGAGACA 1095
Query 959 AGAAAACGTATCAGATGAACCCAGCAAATTACAGAGAGGCCTTGATTGAGGCACGTGAAG 1018
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1096 AGAAAACGTATCAGATGAACCCAGCAAACTACAGAGAGGCATTGATTGAGGCACGTGAAG 1155
Query 1019 ACGAGGCTGAGGGAGCAGACATTCTTCTGGTGAAACCAGGTCTTCCATATTTGGACATCA 1078
|||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1156 ACGAGGCTGAAGGAGCAGACATTCTCCTGGTGAAGCCAGGTCTTCCATATTTGGACATCA 1215
Query 1079 TACGGCTTCTGAGGGACAAATCTCCATTGCCCATTGCTGCATACCAAGTTTCTGGAGAGT 1138
|||||||| |||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 1216 TACGGCTTTTGAGGGACAAGTCTCCATTACCGATTGCTGCATACCAAGTTTCTGGAGAGT 1275
Query 1139 ACTCAATGATCAAAGCAGGGGGAGTTCTGAAGATGATCGATGAAGAGAAAGTGATGATGG 1198
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1276 ACTCGATGATCAAAGCAGGGGGAGTCCTGAAAATGATCGATGAAGAGAAAGTGATGATGG 1335
Query 1199 AGTCCCTGATGTGCTTACGCCGAGCTGGAGCGGACATCATCCTAACATACTTCGCTCTTC 1258
|||| |||||||| |||||| |||||||||||||||||||||| || |||||||||||||
Sbjct 1336 AGTCACTGATGTGTTTACGCAGAGCTGGAGCGGACATCATCCTCACGTACTTCGCTCTTC 1395
Query 1259 AAGCTGCTACTTGTTTATGCGGCGAGAAGCGGTAG 1293
|||||||||||||||| ||||||||||||||||||
Sbjct 1396 AAGCTGCTACTTGTTTGTGCGGCGAGAAGCGGTAG 1430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63604090515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5