BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339216
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69810.1 | Symbols: WRKY36, ATWRKY36 | WRKY DNA-binding prot... 1681 0.0
> AT1G69810.1 | Symbols: WRKY36, ATWRKY36 | WRKY DNA-binding protein
36 | chr1:26277238-26279118 REVERSE LENGTH=1166
Length=1166
Score = 1681 bits (910), Expect = 0.0
Identities = 1086/1168 (93%), Gaps = 23/1168 (2%)
Strand=Plus/Plus
Query 1 ATGATCAAAGAGGAGACCATTTCATGCTT-CAATCCTTTCGATGGTGTTATGGCAGAATC 59
|||||||||||||||||| |||||| ||| ||| |||||||||||||||||||||||||
Sbjct 3 ATGATCAAAGAGGAGACCGTTTCATACTTCCAA-ACTTTCGATGGTGTTATGGCAGAATC 61
Query 60 TGACAAGGAAGAGGAGCTTGATGTAACAAAAGCGAAGGTGGAGAAAGTTAGGGAAGAAAA 119
||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||
Sbjct 62 TGACAAGGAAGAGGAGCTTGATGCAACAAAAGCAAAGGTGGAGAAAGTTCGGGAAGAAAA 121
Query 120 TGAGAAATTAAAGCTCTTACTGTCTACGATTCTTAATAATTACAACTCTCTTCAAATGCA 179
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 122 TGAGAAATTAAAGCTCTTACTCTCTACGATTCTTAATAATTACAACTCTCTTCAAATGCA 181
Query 180 TGTCTCTAACGTTCTCCGAGAACAACAAAGAGC-T--TCTATGGAGCTAGATCA-A--GA 233
|||||||| |||||| || |||||||| |||| | |||||||||||||| || | ||
Sbjct 182 AGTCTCTAAAGTTCTCGGACAACAACAAGGAGCTTCGTCTATGGAGCTAGACCACATTGA 241
Query 234 ----CAA-AT----ATAACGATTTTGATGTAGATATATCACTTAGGCTTGGAAGATCAGA 284
||| || ||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 242 TCGTCAAGATGAAAATAACGACTATGATGTGGATATATCACTTAGGCTTGGAAGATCAGA 301
Query 285 GCAAAAGATCTCTAAAAAGGAGG--AA-AAGGTGGACAAGATTTCTAATGAGAACAAAGA 341
||||||||||||||||||||||| || ||||||||||||||||||| | ||||| |||
Sbjct 302 GCAAAAGATCTCTAAAAAGGAGGAAAATAAGGTGGACAAGATTTCTACTAAGAACGTAGA 361
Query 342 GGAGTCAAAAGATAAAAGATCTGCACTGGGTTTAGGATTTCAGATTCAAAGTTATGAGGC 401
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 362 GGAGTCAAAAGATAAAAGATCTGCACTGGGTTTTGGATTTCAGATTCAAAGCTATGAAGC 421
Query 402 CTTGAAATTAGATGATCTTTGTAGACAGGTTAAGAATGCAAACGCAGAGAATAAGTGTTT 461
|| |||| |||||||||||||||| ||||||||| ||||||||| || ||||| ||| |
Sbjct 422 CTCGAAACTAGATGATCTTTGTAGGCAGGTTAAGCTTGCAAACGCTGAAAATAAATGTGT 481
Query 462 ATCTTCGAGGAAAGATGTCAAAACAGTTAGAAATGAAAATCACCATCAAGATGTTTTGGA 521
|||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||
Sbjct 482 ATCTTCGAGGAAAGATGTCAAATCAGTTAGAAATG-AAA--ACCATCAAGATGTTTTGGA 538
Query 522 AGAGCATGGGCAAGCAGGTTTGAAGAAAACTAGGGTTTGTGTTAAAGCATCATGTGAAGA 581
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GGAGCATGAACAAACAGGTTTGAAGAAAACTAGGGTTTGTGTTAAAGCATCATGTGAAGA 598
Query 582 CCCATCAATAAACGACGGTTGCCAGTGGAGGAAATATGGTCAAAAGACTGCGAAAACCAA 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CCCATCAATAAACGACGGTTGCCAGTGGAGGAAATATGGTCAAAAGACTGCGAAAACCAA 658
Query 642 TCCTCTCCCACGAGCCTATTACCGTTGCTCCATGTCGTCAAATTGTCCCGTTAGAAAACA 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCCTCTCCCACGAGCCTATTACCGTTGCTCCATGTCGTCAAATTGTCCCGTTAGAAAACA 718
Query 702 GGTGCAAAGATGCGGAGAAGAAGAAACATCCGCTTTTATGACAACATACGAAGGAAACCA 761
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 719 GGTGCAAAGATGTGGAGAAGAAGAAACCTCCGCTTTTATGACAACGTACGAAGGAAACCA 778
Query 762 TGACCATCCTCTTCCCATGGAAGCAACCCACATGGCAGCTGGAACTTCCGCGGCTGCCTC 821
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 779 TGACCATCCTCTCCCCATGGAAGCAAGCCACATGGCAGCTGGAACTTCCGCGGCTGCCTC 838
Query 822 CTTATTACAATCTGGctcctcctcctcctcctcATCCACCTCCGCGAGTCTAAGCTATTT 881
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 839 CTTATTACAATCTGGCTCCTCCTCTTCCTCCTCCTCCACCTCAGCGAGTCTAAGCTATTT 898
Query 882 CTTCCCTTTTCACCACTTCTCTATCTCCACAACTAACTCCCACCCGACCGTAACATTGGA 941
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 899 CTTCCCTTTTCACCACTTCTCTATCTCCACCACTAACTCGCACCCGACTGTAACATTGGA 958
Query 942 CCTCACACGACCAAACTATCCCAATCAGTTACCAGACGACTATCCTCTATCGTCCTCTTC 1001
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 959 CCTCACACGACCAAACTATCCCAATCAGTTACCAGACGACTACCCTCTATCGTCCTCCTC 1018
Query 1002 TTTCAGTCTCAACTTCTCCTCTCCTGATCCTCCACCTCAATCATCGCACGATAACACCTT 1061
||||||||||||||| |||||||| ||||||||||||| ||||||||| || |||||||
Sbjct 1019 TTTCAGTCTCAACTTTTCCTCTCCAGATCCTCCACCTCCATCATCGCATGACCACACCTT 1078
Query 1062 GAACTTTAGTGGCTTGCGAACACAAGCTCCTTTGAGTACAGATTCCTTATTGGCCCGTTA 1121
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1079 GAACTTTAGTGGCTTGCGAACACAAGCTCCGTTGAGTACAGATTCATTATTGGCCCGTTA 1138
Query 1122 TCGAACGAGACTTTCCGGACAGCAGTAA 1149
|||||||||||||||||||||||| |||
Sbjct 1139 TCGAACGAGACTTTCCGGACAGCAATAA 1166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56375212035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5