BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339218
Length=2649
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69830.1 | Symbols: ATAMY3, AMY3 | alpha-amylase-like 3 | ch... 2492 0.0
> AT1G69830.1 | Symbols: ATAMY3, AMY3 | alpha-amylase-like 3 |
chr1:26288278-26293053 REVERSE LENGTH=2954
Length=2954
Score = 2492 bits (1349), Expect = 0.0
Identities = 1483/1546 (96%), Gaps = 16/1546 (1%)
Strand=Plus/Plus
Query 1109 ggggggAAGACTTCTATGTCCCTTTCCTTACTTCAAGTAGCTCGCTCGTTGGAACTGAAG 1168
||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 1180 GGGGGGAAGACTTCTATGTCCCTTTCCTTACTTCAAGTAGCTCGCCCG-T-----TGAA- 1232
Query 1169 CTACTGAAGCTGCCCAAGTGAGTAAACACACGCCAAAAACAGATAAAGAAGTGTCTGCTA 1228
||||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 1233 --ACTGAAGCTGCCCAAGTGAGTAAACCCAAACGAAAAACAGATAAAGAAGTGTCTGCTA 1290
Query 1229 GTGGATTTACTGATGAAATCATCACTGAGATAAGGAACTTGGCAATTGACA-TTCACTCT 1287
||||||||||| | ||||||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 1291 GTGGATTTACTAAAGAAATCATCACGGAGATAAGGAACTTGGCAATTGACATTTC-CTCT 1349
Query 1288 CACAAGAATCAGAAGACAAACGTAAAAGAGGTGCAGGAAAACATTCTACAAGAAATCGAG 1347
|| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 1350 CATAAGAATCAGAAGACAAACGTCAAAGAAGTGCAGGAAAACATTCTACAAGAAATTGAG 1409
Query 1348 AAACTGGCTGCGGAGGCATATAGCATATTTAGAAGCACAACTCCGA-CTTTTTCTGAGGA 1406
|||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||
Sbjct 1410 AAACTGGCTGCGGAGGCATATAGCATATTTAGAAGCACAACTCC-AGCTTTTTCCGAGGA 1468
Query 1407 AAGTATTTT---AGCAGAGGCTGAAAAGCCTGACATTAAAATCTCCTCAGGAACCGGCTC 1463
| || |||| |||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1469 AGGTGTTTTAGAAGCAGAAGCTGACAAGCCTGACATTAAAATCTCCTCAGGAACCGGCTC 1528
Query 1464 TGGATTTGAGATATTATGCCAGGGATTCAACTGGGAGTCCCATAAATCTGGGAGATGGTA 1523
|||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct 1529 GGGATTTGAGATATTATGCCAAGGTTTCAACTGGGAGTCCAATAAATCTGGGAGATGGTA 1588
Query 1524 CTTGGAACTTCAAGAAAAAGCCGATGAGTTAGCTTCACTTGGATTCACTGTTCTGTGGTT 1583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1589 CTTGGAACTTCAAGAAAAAGCCGATGAGTTAGCTTCACTTGGATTCACTGTTCTGTGGTT 1648
Query 1584 ACCTCCACCGACAGAATCTGTGTCACCTGAAGGGTACATGCCTAAAGACCTGTATAACTT 1643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1649 ACCTCCACCGACAGAATCTGTGTCACCTGAAGGGTACATGCCTAAAGACCTGTATAACTT 1708
Query 1644 GAATTCCAGATATGGAACTATTGATGAGCTAAAAGATACGGTGAGGAAATTTCACAAGGT 1703
|||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||
Sbjct 1709 GAATTCCAGATATGGAACAATTGATGAGCTAAAAGATACAGTGAAGAAATTTCACAAGGT 1768
Query 1704 TGGGATCAAAGTTTTAGGCGATGCTGTTCTGAATCACCGCTGTGCACACTTCAAGAATCA 1763
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1769 CGGGATCAAAGTTTTAGGCGATGCTGTTCTGAATCACCGCTGTGCACACTTCAAAAATCA 1828
Query 1764 AAATGGTGTATGGAATCTATTTGGAGGACGTCTAAACTGGGACGATAGGGCAGTAGTTGC 1823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1829 AAATGGTGTATGGAATCTATTTGGAGGACGTCTAAACTGGGACGATAGGGCAGTAGTTGC 1888
Query 1824 AGATGACCCTCATTTCCAGGGTAGAGGAAACAAGAGCAGTGGAGATAATTTCCATGCTGC 1883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1889 AGATGACCCTCATTTCCAGGGTAGAGGAAACAAGAGCAGTGGAGATAATTTCCATGCTGC 1948
Query 1884 TCCAAACATAGATCACTCGCAAGACTTTGTTAGGAAGGATATCAAGGAATGGCTATGCTG 1943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1949 TCCAAACATAGATCACTCGCAAGACTTTGTTAGGAAGGATATCAAGGAATGGCTATGCTG 2008
Query 1944 GATGATGGAAGAAGTTGGGTATGATGGATGGAGGCTTGATTTTGTAAGAGGGTTCTGGGG 2003
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2009 GATGATGGAAGAAGTTGGGTATGATGGATGGAGGCTTGACTTTGTAAGAGGGTTCTGGGG 2068
Query 2004 AGGTTATGTGAAAGACTATATGGATGCTAGCAAACCGTACTTTGCGGTTGGTGAATATTG 2063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2069 AGGTTATGTGAAAGACTATATGGATGCTAGCAAACCGTACTTTGCGGTTGGTGAATATTG 2128
Query 2064 GGATTCCCTAAGTTACACGTATGGAGAAATGGACTACAATCAAGACGCACATCGTCAAAG 2123
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2129 GGATTCGTTAAGTTACACGTACGGAGAAATGGACTACAATCAAGACGCACATCGTCAAAG 2188
Query 2124 GATTGTTGACTGGATCAATGCAACCAGTGGAGCTACTGGTGCATTTGATGTCACTACCAA 2183
|| ||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 2189 AATAGTTGACTGGATTAATGCAACTAGTGGAGCTGCTGGTGCATTTGATGTCACTACCAA 2248
Query 2184 AGGAATTCTTCATACGGCGCTTCAAAAATGTGAATATTGGAGACTCTCAGACCCAAAAGG 2243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2249 AGGAATTCTTCATACGGCGCTTCAAAAATGTGAATATTGGAGACTCTCAGACCCAAAAGG 2308
Query 2244 GAAGCCTCCAGGTGTAGTTGGATGGTGGCCTTCTCGTGCTGTAACATTCATTGAGAATCA 2303
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2309 GAAGCCTCCAGGTGTAGTTGGTTGGTGGCCTTCTCGTGCTGTAACATTCATCGAGAATCA 2368
Query 2304 TGACACTGGCTCTACTCAGGGTCATTGGAGATTTCCGGAGGGGAAGGAAATGCAAGGATA 2363
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 TGACACTGGCTCTACACAGGGTCATTGGAGATTTCCGGAGGGGAAGGAAATGCAAGGATA 2428
Query 2364 TGCTTACATCCTGACTCATCCAGGAACACCAGCGGTTTTCTTCGACCATATCTTCTCGGA 2423
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2429 TGCTTACATCCTAACTCATCCAGGAACACCAGCGGTCTTCTTCGACCATATCTTCTCGGA 2488
Query 2424 TTATCATCCCGAGATTGCTGCACTTCTCTCTCTCAGGAACAGACAGAAACTCCACTGTCG 2483
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2489 TTATCATTCCGAGATTGCTGCACTTCTCTCTCTCAGGAACAGACAGAAACTCCACTGTCG 2548
Query 2484 AAGCGAGGTGAATATAGACAAGAGTGAGAGAGATGTGTACGCGGCTATAATAGATGACAA 2543
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2549 GAGTGAGGTGAATATAGACAAGAGTGAGAGAGATGTGTATGCGGCTATAATAGATGAAAA 2608
Query 2544 GGTTGCAATGAAGATCGGACCAGGGCATTATGAACCACCAAACGGATCTAAAAACTGGTC 2603
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2609 GGTTGCAATGAAGATCGGACCAGGGCATTATGAACCACCAAACGGATCGCAAAACTGGTC 2668
Query 2604 TGTAGCCGTTGAAGGCAGAGACTACAAGGTGTGGGAAACATCTTAA 2649
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2669 TGTAGCCGTTGAAGGCAGAGACTACAAGGTGTGGGAAACATCTTAA 2714
Score = 1526 bits (826), Expect = 0.0
Identities = 1026/1116 (92%), Gaps = 39/1116 (3%)
Strand=Plus/Plus
Query 1 ATGTCCACCGTTCCCATTGAGTCTCTTCTCCACCATTCTCGTCTTCGTCACAACTCAAAA 60
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 51 ATGTCCACTGTTCCCATTGAGTCTCTTCTCCACCATTCTTATCTTCGTCACAACTCAAAA 110
Query 61 ATCTATCGCGGAACTAGAAGCTTCTTCATACCT-TGCTCGTTGAATCTCCCTTCTCATTT 119
|| ||||||||| |||||| |||||||||| | |||||||||||||| |||||||||
Sbjct 111 GTCAATCGCGGAAATAGAAG---CTTCATACCTAT-CTCGTTGAATCTCCGTTCTCATTT 166
Query 120 TACTTCCAACAAACTACTACACTCAATTAGAACAAGCGTCGGTGCTAGCTCGA--AACAT 177
||||| ||||||||||||||||||||| ||| ||| ||||||| |||||||| ||||
Sbjct 167 CACTTCTAACAAACTACTACACTCAATTGGAAAAAGTGTCGGTGTTAGCTCGATGAACA- 225
Query 178 AGAAGGT-CCGTCGCGATTCGCGCTAGCTC-TCCCGATACTGCCGTCGTGGAAACCTCTC 235
| || || ||||||| ||||| |||| ||| | | ||||||||||||||||||||| |||
Sbjct 226 A-AA-GTCCCGTCGCCATTCGTGCTACCTCAT-CGGATACTGCCGTCGTGGAAACCGCTC 282
Query 236 AATCGGATGATGTCATCTTCAAACAAAATTTCCCTGTTCAGCGAATCGAAAAGGCAGAAG 295
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 283 AATCGGATGATGTCATCTTCAAGGAAATTTTCCCTGTTCAGCGAATCGAAAAGGCAGAAG 342
Query 296 GAAAGATATATGTTCGATTGAAGCAAGTGAAGGAGAAGAATTGGGAGCTGAGTGTTGGAA 355
||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 343 GAAAGATTTATGTTCGATTAAAGGAAGTGAAGGAGAAGAATTGGGAGCTGAGTGTTGGAT 402
Query 356 GTAGTATTCCTGGAAAATGGATTTTGCATTGGGGAGTTTCATATGTGGGTGATACTGGCA 415
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GTAGTATACCTGGAAAATGGATTTTGCATTGGGGAGTTTCATATGTGGGTGATACTGGCA 462
Query 416 GTGAATGGGATCAACCTCCGGAAGATATGAGACCTCCTGGTTCAGTTGCCATTAAGGACT 475
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 463 GTGAATGGGATCAACCTCCGGAAGATATGAGACCTCCTGGCTCAATTGCCATTAAGGACT 522
Query 476 ATGCTATAGAGACACCGTTAAAGAAGTTATCCGAAGGAGATTCATTTTTTGAAGTTGCTA 535
|||| ||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 523 ATGCCATAGAGACACCTTTGAAGAAGTTATCTGAAGGAGATTCTTTTTTTGAAGTTGCTA 582
Query 536 TTAATCTAAATCTGGAGAGTTCAGTTGCAGCTCTCAATTTTGTTTTGAAGGACGAAGAAA 595
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 583 TTAATCTAAATCTGGAGAGTTCTGTAGCAGCTCTCAATTTTGTTTTGAAGGACGAAGAAA 642
Query 596 CTGGGGCGTGGTATCAGCACAAAGGGAGAGATTTTAAGGTTCCTCTTGTGGACGATGTTC 655
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 643 CTGGGGCGTGGTATCAGCACAAAGGGAGAGACTTTAAGGTTCCTCTTGTAGACGATGTTC 702
Query 656 CTGATAATGGAAATTTGATTGGAGCAAAGAAAGGATTTGGTGCCATTGGGCAGCTTTCAA 715
||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||
Sbjct 703 CTGATAATGGAAATTTGATCGGAGCTAAGAAAGGATTTGGTGCCCTTGGGCAGCTTTCAA 762
Query 716 ACATCCCTCTCAAACAAGATGAGTCCAGTGCAGAAGTTCaaaaaaaGAGCAAGAGTTCAT 775
|||||||||||||||||||| ||||||||||||| | | | || ||| |
Sbjct 763 ACATCCCTCTCAAACAAGATAAGTCCAGTGCAGA-G---A---------CT-GA-TTC-T 806
Query 776 CTGATTCTACGAAAGAAAGAAAAAGTCTTCAAGAGTTTTACGAGGAGATGCCAATAAGTA 835
||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 807 ---ATT----GAA-GAAAGAAAAGGTCTTCAAGAGTTTTACGAGGAGATGCCAATAAGTA 858
Query 836 AATGTGTTGCCGATGATAATTCAGTCAGTGTCACTGCAAGGAAATGCCCTGAAACATCTA 895
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 859 AACGTGTTGCCGATGATAACTCAGTCAGTGTCACTGCAAGGAAATGCCCTGAAACATCTA 918
Query 896 AGAACATTGTATCAATTGAAACTGATTTACCGGGTGACGTTACTGTCCACTGGGGAGTTT 955
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 919 AGAACATTGTATCAATTGAAACCGATTTACCGGGTGACGTTACTGTCCACTGGGGAGTTT 978
Query 956 GCAAAAACGGCAGTAA-AAGATGGGAAATTCCATCTGAACCTTACCCTGAAGAGACATCT 1014
|||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 979 GCAAAAACGGCACTAAGAA-ATGGGAAATTCCATCTGAACCTTACCCTGAAGAGACATCT 1037
Query 1015 CTGTTCAAGAACAAGGCATTACGCACTCGTTTACAGCGAAAAGACGACGGAAATGGATCG 1074
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1038 TTGTTTAAGAACAAGGCATTACGCACTCGTTTACAGCGAAAAGACGATGGAAATGGATCG 1097
Query 1075 TTTGGATTATTCTCTCTGGATGGAAACCTTGAAggg 1110
|||||||||||||||||||||||||| |||||||||
Sbjct 1098 TTTGGATTATTCTCTCTGGATGGAAAGCTTGAAGGG 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131537724546
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5