BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339268
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70400.3 | Symbols: | FUNCTIONS IN: molecular_function unkn... 763 0.0
AT1G70960.1 | Symbols: | F-box and associated interaction doma... 723 0.0
AT3G60610.1 | Symbols: | pseudogene, putative pre-mRNA process... 351 9e-96
AT1G60170.1 | Symbols: emb1220 | pre-mRNA processing ribonucleo... 333 3e-90
> AT1G70400.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: egg cell; CONTAINS
InterPro DOMAIN/s: NOSIC (InterPro:IPR012976); BEST Arabidopsis
thaliana protein match is: pre-mRNA processing ribonucleoprotein
binding region-containing protein (TAIR:AT1G60170.1);
Has 484 Blast hits to 484 proteins in 190 species: Archae
- 0; Bacteria - 0; Metazoa - 149; Fungi - 134; Plants - 124;
Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
| chr1:26531399-26533460 REVERSE LENGTH=910
Length=910
Score = 763 bits (413), Expect = 0.0
Identities = 518/568 (91%), Gaps = 9/568 (2%)
Strand=Plus/Plus
Query 1123 GCAAATCTTGAAGATATTGGTATGGACATGGCAGACTTAAAGACACTTAACTACGATGAT 1182
|||| ||||||||||||||||||||||||| |||| ||||| || |||| ||||||||||
Sbjct 65 GCAACTCTTGAAGATATTGGTATGGACATGACAGAATTAAATACCCTTACCTACGATGAT 124
Query 1183 CTCGATAATTTTTCAAAGCTACAAAAAAGTCAGAGATATGCTGATATAATACAAAAAGTG 1242
||||||| | ||||||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 125 CTCGATAGTGTTTCAAAGCTACAAAAAAGTCGGAGATATGCTGATATAATGCAGCAAGTG 184
Query 1243 GAAGAGGCTCTTGAGAAAGGAACTGTATTAGAGTACAAGAAGCTAATCGAGGATTGTAAT 1302
|||||||||||| | ||||| ||||||||||||||||||||||||||| ||| || ||
Sbjct 185 GAAGAGGCTCTT--G-AAGGATCTGTATTAGAGTACAAGAAGCTAATCGTGGACTGCAAG 241
Query 1303 CAGCTCTTAGTTGATATTGAGAATGAAATAGTCATCGTTCACAACTTTATCCGTGAGAAG 1362
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 242 CAGCTCTTAGTTGATATTGAGAATGAAATAGTCATCGTCCAAAACTTTATCCGTGACAAG 301
Query 1363 TATAGACTTAAGTTTCAAGAGCTTGAGTCG-TTGGTTCATCACCCAATCGATTATGTTCG 1421
|||||| ||||||||||||||||||||| | || |||| ||||||||||||||||| |||
Sbjct 302 TATAGAGTTAAGTTTCAAGAGCTTGAGTTGCTT-GTTCCTCACCCAATCGATTATGCTCG 360
Query 1422 TGTTGTGAAAAGAATTGGCAATGAGATGGACTTAACCCTTGTTGATCTTGAAGGCCTTCT 1481
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 361 TGTTGTGAAAAGAATTGGCAATGAGATGGATTTAAAACTTGTTGATCTTGAAGGCCTTCT 420
Query 1482 TCCATCAGCTATGATCATGGTTGTTTCAGTTACTGCTTCAACCACGAAAGGTAACCAACT 1541
|||||| ||||||||||||||| ||| ||||||||||| |||||| ||||| ||||||||
Sbjct 421 TCCATCTGCTATGATCATGGTTCTTTTAGTTACTGCTTTAACCACAAAAGGGAACCAACT 480
Query 1542 GCCTA-AGGATGTTCTGCTAAAAACGATAGATGCTTGTAATCGGGCTCTAGATCTTGATT 1600
||| | |||||||||||||||| |||||||| |||||| |||||||||| ||||||||||
Sbjct 481 GCC-AGAGGATGTTCTGCTAAAGACGATAGACGCTTGTGATCGGGCTCTGGATCTTGATT 539
Query 1601 CCGCAAGGAAGAAGCCATCTCATGCTTCGGAAACACCGTCCTCCTCTGCATCTGGAT-CG 1659
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 540 CCGCAAGGAAGAAGCCATCTCATGCTTCGGAAACACCCTCCTCCTCTGCATCTGGATAC- 598
Query 1660 AAGTCTGTGGAAAACATAAAGCCTATCA 1687
|||||| |||||||| |||||| |||||
Sbjct 599 AAGTCTCTGGAAAACGTAAAGCATATCA 626
> AT1G70960.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:26756253-26757362 FORWARD LENGTH=1110
Length=1110
Score = 723 bits (391), Expect = 0.0
Identities = 912/1150 (79%), Gaps = 90/1150 (8%)
Strand=Plus/Plus
Query 1 ATGGTGAACACAAGTTTCGAAACACCTCCT-GA-A-ATGCATGTGGAGATTCTGGCACGG 57
||||||||||||||||||||||||| |||| || | ||||| ||||||||||| |||||
Sbjct 1 ATGGTGAACACAAGTTTCGAAACACTTCCTAGACATATGCAAATGGAGATTCTGTCACGG 60
Query 58 TTGCCTCTGAAATCCTTAATGAAATTCATGTCCGTCTCAAAGAAATGGGAATCTATCATA 117
|||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 61 GTGCCTCTGAAATTTTTAATGAAATTCATGTGCGTCTCAAAGAAATGGGCATCTATCATT 120
Query 118 CGTGGGGAACAATTCAGACG-TGATTACTTGATCCAATCAATGACAAGGCCTCGAGTGTT 176
||||||||| |||||||| | ||||||||| |||||||||||| |||||||||||||||
Sbjct 121 CGTGGGGAAGAATTCAGA-GAAGATTACTTGTTCCAATCAATGAAAAGGCCTCGAGTGTT 179
Query 177 GTTCGTCGCCAATCGTAGATACTTCCACAATTTCAAACCCGAAGCGCTCTTTCATTCTGT 236
||||||| | ||| |||| | | || | | |||||||||||||| ||||||| |||||
Sbjct 180 GTTCGTCATCGATCATAGAGAATACCTCCCTATCAAACCCGAAGCGTTCTTTCACTCTGT 239
Query 237 TTATCAAG-AG--GAACCATCGTCGTTATCTAGTGTACAGCAG-ATGCGTACATACGAAA 292
|||||||| || |||||| || ||| ||| || ||||| | |||||||||| |||||
Sbjct 240 TTATCAAGAAGATCAACCATTGTTGTTGTCTGGTAAACAGC-GTATGCGTACATTCGAAA 298
Query 293 CACCACTT-TAT-AAGGTTTCTCAACCCGTCCGTGGTTTGATATGTCATCAAGGAGATAC 350
|||||||| | | || |||| ||||||| ||||||||||||| ||||| |||||| ||
Sbjct 299 CACCACTTGT-TCAA-GTTTTTCAACCCATCCGTGGTTTGATCTGTCAACAAGGATATGG 356
Query 351 TAATATTGTGATTTGCAATCCGGGTTTGAAAAAGTTTCGGAACTTACCGCAGATCGAAGT 410
||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 357 TAAGATTGTGATTTGCAATCCGGGTTTAAAAAAGTTTCGGAGTTTACCGCAGATCAAAGT 416
Query 411 GCCTGAATTTGCATCCATGAGAAGTTTTTTCGGATATGATGAAGTTAAGAATGTATTCAA 470
| | || ||| ||||||||| |||||| ||||| ||||||| |||| ||||||||||
Sbjct 417 TCATAAAGGAGCACCCATGAGAACTTTTTTTGGATACGATGAAGATAAGGATGTATTCAA 476
Query 471 GGTGTTATGTATAACACAGTTAGTAAAATATCAGACAACTACTGAAGGTGATATACACAA 530
|||||||||||| | ||| | | || || || | | || | | || || ||
Sbjct 477 GGTGTTATGTAT-A-ACA--T-G-----GCTCCGA-AA-TGGT-AA-GCG--AT-CAGAA 519
Query 531 GGTGAGATCGGATGTAGG-ACATCAGGTATACACGGTGAGATCGGATGTGGAATCTTCTT 589
|| | | | | ||| | ||| ||||||||| || ||||||||| ||||||||||
Sbjct 520 -GT-A-A---G-T-AAGGAATATCTTGTATACACGATGGGATCGGATGAAGAATCTTCTT 571
Query 590 CTTGGAAAGG--GATCGCATGTAATTATGATTATTCAGCAGTTACTGAAGGACTATTTAA 647
||||| ||| |||| ||||| | |||| || || ||||||| |||||||| |||||
Sbjct 572 CTTGG--AGGCTGATCACATGTGAGCATGACCATGCACCAGTTACCGAAGGACTTTTTAA 629
Query 648 AGGAGGTTTCTTGTACTATGGAGCTCAGTCCAATAATGACCAATCTGTGGTAATGAGTTT 707
|||||| | ||||||||||||||| | |||||||||| | |||| ||||||||||| ||
Sbjct 630 AGGAGGAGTGTTGTACTATGGAGCTAAATCCAATAATGGCAAATCAGTGGTAATGAGCTT 689
Query 708 CAACGTGAGTTCTGAAGATTTTAGTGTCATTGAGTTGCCTAACGAAGTCGACTTT-GATA 766
|||||||| |||||||||||||||||||||||||||| |||||||| || | |
Sbjct 690 CAACGTGAATTCTGAAGATTTTAGTGTCATTGAGTTG------GAAGTCGAAATTAG-TC 742
Query 767 ATAATTGGAAATTGGTGAATTACAAAGGGGG-TATTGCCTTGGTGGATGAGGACAACTTT 825
| |||||| ||||||||||||||| ||||| ||||||| | |||| ||||| ||
Sbjct 743 CTTATTGGAGATTGGTGAATTACAA-GGGGGATATTGCCCTA----ATGA--ACAACATT 795
Query 826 GAC-ATTCACTTGAATGGCAATAGAGTTTTTAAAATTTTGTTTAGGAACGAAGTTGCTGG 884
|| || |||| || || | ||| ||| |||| | | |||||||||| ||| ||||
Sbjct 796 GAGGATAG-CTTGTATCACAGTCGAGAATTTGAAATGTGGGTTAGGAACGAGGTTACTGG 854
Query 885 AAATTGGGAGATAGAG-ACCATTGAGATTCCTCGTTGGAAAGAAACGGTTGAT---AACG 940
||||||||| | | | | |||| ||||| ||| |||||| | ||| |||||| || |
Sbjct 855 AAATTGGGACAGA-ACTAGCATTAAGATTTCTCATTGGAATGGAACTGTTGATGGTAA-G 912
Query 941 AGGATTATCATTTTAAAGGTACCATTGGAACAGGAGAACTTCTTGTTTTCGCACCA-ACT 999
| | || | |||| |||||||| ||||||||| ||||||| | |||||||||| |||
Sbjct 913 ACGTTT-T-ATTTCAAAGGTACTATTGGAACAAAAGAACTT---GCTTTCGCACCAGACT 967
Query 1000 CAT-GGTACTCGGTTCGGGAGAAGAGT--GT-T-GTATTGCGATGA-AGCCACAAAGAAC 1053
|| ||| | || || | || | | || | ||||| |||| | || |||||||||
Sbjct 968 -ATTGGTT-T-GG---GGAACAACATTTTGTGTCGTATTACGAT-ACAGAAACAAAGAAC 1020
Query 1054 CTCAGAAGATTTGATATTGAAGAAAGAATGATTGATGAAGATCATATTGTTCGAACCTTC 1113
|||||||||||||||||||||| ||||| ||||| ||||| || ||||||||||||||
Sbjct 1021 CTCAGAAGATTTGATATTGAAG---GAATGGTTGATCAAGATGATTTTGTTCGAACCTTC 1077
Query 1114 TTTGATCATG 1123
||||||||||
Sbjct 1078 TTTGATCATG 1087
> AT3G60610.1 | Symbols: | pseudogene, putative pre-mRNA processing
ribonucleoprotein, similar to U4/U6 snRNP-associated 61
kDa protein (Homo sapiens) GI:18249847; contains Pfam profile
PF01798: Putative snoRNA binding domain; blastp match of
63% identity and 1.9e-143 P-value to GP|24059931|dbj|BAC21394.1||AP004010
putative U4/U6 snRNP-associated 61 kDa protein
{Oryza sativa (japonica cultivar-group)} | chr3:22403237-22405048
REVERSE LENGTH=1812
Length=1812
Score = 351 bits (190), Expect = 9e-96
Identities = 402/500 (80%), Gaps = 31/500 (6%)
Strand=Plus/Plus
Query 1132 GAAGATATTGG-TATGGACATGGCAGACTTAAAGACACTTAACTACGATGATCTCGATAA 1190
|||||| ||| |||||| ||||| || ||| ||||||||||||| |||||||||||||
Sbjct 287 GAAGAT-GTGGATATGGATATGGCGGATTTAGAGACACTTAACTATGATGATCTCGATAG 345
Query 1191 TTTTTCAAAGCTACAAAAAAGTCAGAGATATGCTGATATAATACAAAAAGTGGAAGAGGC 1250
| |||| ||||| || || | ||||||||||| |||||| || || ||||| || |||||
Sbjct 346 TGTTTCTAAGCTTCAGAAGACTCAGAGATATGATGATATTATGCACAAAGTAGAGGAGGC 405
Query 1251 TCTTGAGAAAGGA-ACTG-T-ATTA-GAGTACAAGAAGCTAATCGAGGATTGTAATCAGC 1306
||||| |||| || ||| | || | |||| | ||||| || | |||||||||| |||
Sbjct 406 TCTTGGGAAA-GATTCTGATGATCATGAGT---ATAAGCTTATTGTGGATTGTAATAAGC 461
Query 1307 TCTT-AGTTGATATTGAGAATGAAATAGTCATCGTTCACAACTTTATCCGTGAGAAGTA- 1364
| || |||||||||||| ||||||| || || || |||||||||||| || |||||
Sbjct 462 T-TTCGGTTGATATTGAGGATGAAATCGTTATTGTCCACAACTTTATCAAAGAAAAGTAC 520
Query 1365 TAGACTTAAGTTTCAAGAGCTTGAGTCGTTGGTTCATCACCCAATCGATTATGT-TCGTG 1423
|| |||| ||||||||||||||||||||||||||||||||| || || |||| | |||
Sbjct 521 AAG-CTTAGGTTTCAAGAGCTTGAGTCGTTGGTTCATCACCCTATTGACTATGCAT-GTG 578
Query 1424 TTGTGAA-AAGAATTGGCAATGAGATGGACTTAACCCTTGTTGATCTTGAAGGCCTT--- 1479
|||| || |||| |||||||||||| ||| || || ||||||||| ||| ||||||
Sbjct 579 TTGTCAAGAAGA-TTGGCAATGAGACGGATTTGACTCTTGTTGATTTTGCTGGCCTTGAT 637
Query 1480 CTTCCATC-AGCTATGATCATGGTTGTTTCAGTTACTGCTTCAACCACGAAAGGTAAC-C 1537
||| | || |||||| ||||||| | ||||||||||||||||||| |||||||| | |
Sbjct 638 CTTAC-TCCAGCTATTATCATGGCTATTTCAGTTACTGCTTCAACTACGAAAGGGAGTGC 696
Query 1538 AACTGCCTA-AGGATGTTCT-GCTAAAAAC-GATAGATGCTTGTAATCGGGCTCTAGATC 1594
| ||||| | |||||||| | || |||| | |||| |||||| |||||| | ||||||
Sbjct 697 A-CTGCC-AGAGGATGTT-TAGC-AAAAGGTGTTAGAGGCTTGTGATCGGGATTTAGATC 752
Query 1595 TTGATTCCGCAAGGAAGAAG 1614
||||||||||||| ||||||
Sbjct 753 TTGATTCCGCAAGAAAGAAG 772
> AT1G60170.1 | Symbols: emb1220 | pre-mRNA processing ribonucleoprotein
binding region-containing protein | chr1:22192773-22195400
FORWARD LENGTH=1819
Length=1819
Score = 333 bits (180), Expect = 3e-90
Identities = 415/521 (80%), Gaps = 46/521 (9%)
Strand=Plus/Plus
Query 1132 GAAGATATTGGTATGGACATGGCAGACTTAAAGACACTTAACTACGATGATCTCGATAAT 1191
|||||| ||| |||||| ||||| || ||| ||||||||||||| |||||||||||||||
Sbjct 238 GAAGATGTTGATATGGATATGGCTGATTTAGAGACACTTAACTATGATGATCTCGATAAT 297
Query 1192 TTTTCAAAGCTACAAAAAAGTCAGAGATATGCTGATA-TA---ATACAA--A-A--A-G- 1240
|||| ||||| || || ||||||||||||||||||| || ||| || | | | |
Sbjct 298 GTTTCTAAGCTGCAGAAGAGTCAGAGATATGCTGATATTATGCATA-AAGTAGAGGAGGC 356
Query 1241 ---T-GG-AAGAGGCT-CT-----TGAGAAAGGAACTGTATT---AGA-G-TAC--A--A 1280
| || |||| || | ||||||||||||||| || ||| | | | | |
Sbjct 357 TCTTGGGAAAGATTCTGATGGAGCTGAGAAAGGAACTGTCTTGGAAGATGATCCTGAGTA 416
Query 1281 GAAGCTAATCGAGGATTGTAATCAGCTCTT-AGTTGATATTGAGAATGAAATAGTCATCG 1339
||||| || | ||||||||||||||| || || ||||||||||||||||| || || |
Sbjct 417 TAAGCTTATTGTGGATTGTAATCAGCT-TTCGGTCGATATTGAGAATGAAATCGTTATTG 475
Query 1340 TTCACAACTTTATCCGTGAGAAGTA-TAGACTTAAGTTTCAAGAGCTTGAGTCGTTGGTT 1398
| |||||||||||| || ||||| || ||||||||||||||||||||||||||||||
Sbjct 476 TCCACAACTTTATCAAAGACAAGTACAAG-CTTAAGTTTCAAGAGCTTGAGTCGTTGGTT 534
Query 1399 CATCACCCAATCGATTATGT-TCGTGTTGTGAA-AAGAATTGGCAATGAGATGGACTTAA 1456
|||||||| || || |||| | |||||||||| |||| |||| ||||||| ||| ||
Sbjct 535 CATCACCCTATTGACTATGCAT-GTGTTGTGAAGAAGA-TTGGGAATGAGACGGATTTGG 592
Query 1457 CCCTTGTTGATCTTGAAGGCCTTCTTCCATCAGCTATGATCATGGTTGTTTCAGTTACTG 1516
| ||||||||||| | | ||||||||| |||||||| ||||||||||||||||||||||
Sbjct 593 CTCTTGTTGATCTCGCTGACCTTCTTCCTTCAGCTATTATCATGGTTGTTTCAGTTACTG 652
Query 1517 CTTCAACCACGAAAGGTAAC-CAACTGCCTA-AGGATGTTCTGCTAAAAAC-GATAGATG 1573
||| ||| |||||||| | || ||||| | |||||||| ||| |||| | |||| |
Sbjct 653 CTTTAACTACGAAAGGGAGTGCA-CTGCC-AGAGGATGTTTTGC-AAAAGGTGTTAGAGG 709
Query 1574 CTTGTAATCGGGCTCTAGATCTTGATTCCGCAAGGAAGAAG 1614
||||| |||||||| ||||||||||||||||||||||||||
Sbjct 710 CTTGTGATCGGGCTTTAGATCTTGATTCCGCAAGGAAGAAG 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84688319415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5