BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339306
Length=1836
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family... 1184 0.0
AT5G52640.1 | Symbols: HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90... 649 0.0
AT3G49990.1 | Symbols: | unknown protein; Has 1524 Blast hits ... 169 1e-40
AT1G10580.1 | Symbols: | Transducin/WD40 repeat-like superfami... 152 1e-35
> AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family
protein | chr1:11479866-11482890 FORWARD LENGTH=1852
Length=1852
Score = 1184 bits (641), Expect = 0.0
Identities = 869/973 (89%), Gaps = 39/973 (4%)
Strand=Plus/Plus
Query 11 agaagacgaataaaagtaagagagaggagaaactgag--tgagaagaataagaagaagga 68
|||||| ||| ||| ||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 234 AGAAGAAGAAGAAACGTAAGAGAGAGGAGAAA--GAGTCTGAGAAGAATAAGAAGAAGGA 291
Query 69 tgtcccggagaagaagctagaagCTGAGGAGTTAAGTGTTACCAATGGAGGAGAAAGTGA 128
|||||||||||||||||| ||||||||||| || || | | || ||| ||| |||||
Sbjct 292 TGTCCCGGAGAAGAAGCTTGAAGCTGAGGA-TTTAG-G--A-GAA-GGA-GAG--AGTGA 342
Query 129 GCAACCGAAGGTTGTTATGACTGGGAAAGATGTGGAAGAAGCAAAGTACGCAACTTTGAA 188
|||| |||||||||| |||||||||||| |||||||||||||||||||||| |||||||
Sbjct 343 ACAACAGAAGGTTGTTGTGACTGGGAAAGGTGTGGAAGAAGCAAAGTACGCAGCTTTGAA 402
Query 189 GACTTTTGCTGAATCGAATTTGACGGAGAA-----T-G--T-TT-T-AGA------A-AA 230
|||||||||||||||||||||| ||||||| | | | || | ||| | ||
Sbjct 403 GACTTTTGCTGAATCGAATTTGCCGGAGAATGTTTTAGATTGTTGTAAGACTTTCGAGAA 462
Query 231 GCCATCTCCGATTCAGTCACATAAGTGGCCAG-TTTTGTTAGATGGTCGTGATCTTATCG 289
||| ||||||||||||||||||| |||||| | ||||||||||||| |||||||||||||
Sbjct 463 GCCGTCTCCGATTCAGTCACATACGTGGCC-GTTTTTGTTAGATGGGCGTGATCTTATCG 521
Query 290 GGATTGCAAAAACTGGGTCAGGTAAGACATTGGCTTCTGGGATTCTTGCGATTATGCATG 349
||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 522 GGATTGCGAAAACTGGGTCAGGTAAGACATTGGCTTTTGGGATTCCTGCGATTATGCATG 581
Query 350 TGTTAAAGAAGAATAAGAAGATTGGTGGAGGATCAAAGAATGTCAATCCTACTTGTTTGG 409
|||| ||||| ||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 582 TGTTGAAGAAAAATAAGAAGATTGGTGGAGGATCAAAGAAGGTTAATCCTACTTGTTTAG 641
Query 410 TTCTTTCTCCTACACGAGAATTGGATGTTCAGATTTCTGATGTTTTGAGTGAAGCTGGAG 469
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 642 TTCTTTCTCCTACACGAGAATTGGCTGTTCAGATTTCTGATGTTTTGCGTGAAGCTGGAG 701
Query 470 AACCTTGTGGTGTGAAATCAATATGTGTATATGGTGGAAGCTCTAAAAGGCGTCAAATAA 529
|||| |||||| ||||||| || ||||| |||||||||||||||||| ||| ||||||||
Sbjct 702 AACCGTGTGGTTTGAAATCGATTTGTGTGTATGGTGGAAGCTCTAAAGGGCCTCAAATAA 761
Query 530 ATGCTATTCGATTTGGAGTTGATATTGTCATTGGTATGCATGGTCGTTTGAGAGACTTGA 589
||| ||||||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 762 GTGCAATTCGATCTGGAGTTGATATTGTCATTGGTACGCCTGGTCGTTTGAGAGACTTGA 821
Query 590 TTGAGTCTAATGAGCTTCGTCCCTCGAAAGTTTCCTTTGTGGTATTGGATGAAGCAGATC 649
|||||||||||| |||||||| |||| | ||||||||||| |||||||||||||||||||
Sbjct 822 TTGAGTCTAATGTGCTTCGTCTCTCGGATGTTTCCTTTGTCGTATTGGATGAAGCAGATC 881
Query 650 AAATGCTTGATATGAGTTTCGAAGAACCTGTTCGGTTTACATTGAGCAAGACAAATAAAG 709
||||||||||||| ||||||| |||||||| ||||||| |||||| || ||||||||||
Sbjct 882 GAATGCTTGATATGGGTTTCGAGGAACCTGTCCGGTTTATATTGAGTAACACAAATAAAG 941
Query 710 TTCGTGAGATGGTTATGTTCAGTGCAACTTGGCCTTTGGATGTTCACAAATTGGCGCAGG 769
||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 942 TTCGTCAAATGGTTATGTTCAGTGCAACTTGGCCTTTGGATGTTCACAAATTGGCCCAGG 1001
Query 770 AATTCATGGATCCAAACCCAATCAAGGT-AGTCATAGGCTCCGTAGACTTAGCCGCCAAC 828
|||||||||||||||| ||||||||||| | ||||||| || ||||||||||| ||||||
Sbjct 1002 AATTCATGGATCCAAATCCAATCAAGGTGA-TCATAGGTTCTGTAGACTTAGCTGCCAAC 1060
Query 829 CACGACGTTACGCAAATCATTGAGGTCTTGGATGAACGTGCGCG-GAAGCAGCGACTTGT 887
|||||||||| ||||||||||||||||||||||||||||||||| || ||||| || |
Sbjct 1061 CACGACGTTATGCAAATCATTGAGGTCTTGGATGAACGTGCGCGTGAT-CAGCGTCTCAT 1119
Query 888 TGCCTTACTAGAAAAATACCATAAATCTCAAAAGAACAGGTTTTTGGTACTTGCTTTACA 947
||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 1120 TGCATTACTAGAAAAATACCATAAATCTCAAAAGAACAGGGTTTTGGTATTTGCTTTATA 1179
Query 948 ACAAGGTG-AAGC 959
||||||| ||||
Sbjct 1180 -CAAGGTGGAAGC 1191
> AT5G52640.1 | Symbols: HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90.1,
AtHsp90-1, HSP90.1 | heat shock protein 90.1 | chr5:21352399-21355361
FORWARD LENGTH=2475
Length=2475
Score = 649 bits (351), Expect = 0.0
Identities = 430/468 (92%), Gaps = 5/468 (1%)
Strand=Plus/Plus
Query 1288 aaagaaggactgaaacttgaagatgagaccgaagaagagaaaaaaaaGAGGGAAGAGAAG 1347
|||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1710 AAAGAAGGCCTCAAACTTGAAGATGAGACCGAAGAAGAGAAGAAAAAGAGGGAAGAGAA- 1768
Query 1348 GAAGAA-TCTTTCGAGAATCTCTGCAAGACGATTAAGGAAATTCTTGGAGACAAAGTTGA 1406
|||||| || ||||||||||| ||||||||||||||||||||||| || ||||| |||||
Sbjct 1769 GAAGAAGTCCTTCGAGAATCTGTGCAAGACGATTAAGGAAATTCTCGGGGACAAGGTTGA 1828
Query 1407 GAAGGTTGTGGTCTCAGACAGGATTGTGGACTCTCCTTGCTGTCTAGTAACTGGTGAATA 1466
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1829 GAAGGTTGTGGTCTCAGACAGGATTGTGGACTCTCCCTGCTGTCTAGTAACTGGTGAATA 1888
Query 1467 CAGATGGACTGCGAACATGGAGAGGATTATGAAGACAGAGGCGTTGAGAGATAGCAGCAT 1526
|||||||||| || |||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1889 TGGATGGACTGCAAATATGGAGAGGATTATGAAGGCACAGGCGTTGAGAGATAGCAGCAT 1948
Query 1527 GAGTGGTTACATGTCGAGCAAGAAAACAATGGAGATCAACCCCGACAATGGTATCATGGA 1586
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1949 GAGTGGTTACATGTCGAGCAAGAAAACAATGGAGATCAACCCCGACAACGGTATAATGGA 2008
Query 1587 GGAGCTTAGGAAGAGAGCTGAAGTTGACAAGAATGGCAAGTCCGTTAAAGATCTCGTCAT 1646
|||||| |||||||||||||||| |||||||||| |||||| ||||||||||| |||||
Sbjct 2009 GGAGCTCAGGAAGAGAGCTGAAGCAGACAAGAATGACAAGTCTGTTAAAGATCTTGTCAT 2068
Query 1647 GAAGCTGT-TCGTGACAGCTTTGTTGACTTCTGGATTCAGTCTTGATGAACCAAATACGT 1705
| ||||| | | ||||||||||||||| ||||||||||||||||||||||| || || |
Sbjct 2069 GTTGCTGTAT-GAGACAGCTTTGTTGACGTCTGGATTCAGTCTTGATGAACCGAACACTT 2127
Query 1706 TTGCTGCTAGGATTCACACAATGTTGAAGTTGGGTCTGAC-ATTGATG 1752
|||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 2128 TTGCTGCTAGGATTCACAGGATGTTGAAGTTGGGTCTGAGTATTGATG 2175
> AT3G49990.1 | Symbols: | unknown protein; Has 1524 Blast hits
to 1298 proteins in 225 species: Archae - 9; Bacteria - 84;
Metazoa - 474; Fungi - 184; Plants - 98; Viruses - 17; Other
Eukaryotes - 658 (source: NCBI BLink). | chr3:18532323-18534274
REVERSE LENGTH=1762
Length=1762
Score = 169 bits (91), Expect = 1e-40
Identities = 118/131 (90%), Gaps = 1/131 (1%)
Strand=Plus/Plus
Query 1043 TGAGGAAGGAGATTTTGGAGTTAGGATATCTTGATGACGGTTATAATTACTTGGAGCATT 1102
|||||||||||||||| |||||||| |||| |||||| ||||||||||||||||||||||
Sbjct 350 TGAGGAAGGAGATTTTAGAGTTAGGGTATCCTGATGATGGTTATAATTACTTGGAGCATT 409
Query 1103 TGAGAGAGATTAAGAATCCTGGTGGTGGTTCTACTTTCTATGCGGATTCTAAGTTTGAAG 1162
||||||||||||||||| ||||||||||||||| |||||||| | || |||||| ||| |
Sbjct 410 TGAGAGAGATTAAGAATACTGGTGGTGGTTCTAATTTCTATGTGAATCCTAAGTATGAGG 469
Query 1163 TTGATCACGTT 1173
||| ||| |||
Sbjct 470 TTGCTCA-GTT 479
> AT1G10580.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:3491281-3493737 REVERSE LENGTH=2073
Length=2073
Score = 152 bits (82), Expect = 1e-35
Identities = 92/97 (95%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 945 ACAACAAGGTGAAGCCAAAGGGGAGCATTATGCAGATAAGAGTACATTCCATGGCAAAGA 1004
||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 747 ACAACAAGGTGAAACCAAAGGAGAGCATTATGCGGATAAGAGTACCTTCCATGGCAAAGA 806
Query 1005 GGAGAAAGATTATCAAGGAAGGTCTTGGATTAAGGCT 1041
||||||||||||||||||||||||||||||| |||||
Sbjct 807 GGAGAAAGATTATCAAGGAAGGTCTTGGATTGAGGCT 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90862986450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5