BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339394
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71750.2 | Symbols: HGPT | Hypoxanthine-guanine phosphoribos... 612 1e-174
> AT1G71750.2 | Symbols: HGPT | Hypoxanthine-guanine phosphoribosyltransferase
| chr1:26987775-26989199 REVERSE LENGTH=831
Length=831
Score = 612 bits (331), Expect = 1e-174
Identities = 426/471 (90%), Gaps = 9/471 (2%)
Strand=Plus/Plus
Query 1 ATGGCGCAAGAGAAGCACATAGAGAAGGTGCTTTTCAGCGATGAAGTAATCGCTG-AGCG 59
|||||| ||||||||||||||||||||| || ||||||||||||||||| || | | ||
Sbjct 56 ATGGCGTTAGAGAAGCACATAGAGAAGGTACTCTTCAGCGATGAAGTAATTGC-GCACCG 114
Query 60 TGTTG-GTCAACTTGG-ATCTGAGATTACTTCTGATTTCTCCGGTGACTC---GGAATCG 114
| || ||| ||||| ||| || |||||||||||||||||||||||||| |||| |
Sbjct 115 -GGTGAATCAGCTTGGAATC-GATATTACTTCTGATTTCTCCGGTGACTCGGAGGAAACT 172
Query 115 CCTGTTTTCGTCGGCGTAGCCACCGGTGCTTGCCTTTTCTTGGCCGATCTCGTTAGGCGA 174
||| |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 173 CCTATTTTTGTCGGCGTAGCCACTGGTGCTTGCCTCTTCTTGGCCGATCTCGTTAGGCGA 232
Query 175 ATTGACTTGCCCATCGCTATTGATTACATCAGAGCTGAGTCTTACGGCTCTGGTACTGTA 234
||||||||||| || ||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 233 ATTGACTTGCCAATAGCTATAGATTTCATTAGAGCTGAGTCTTACGGCTCTGGTACTGTA 292
Query 235 TCCAATGGACTTCCCAGAATATCGTTTGACTTAAAGCTTGACATCACGAACAAGCACGTT 294
|||| |||| |||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 293 TCCAGTGGAGTTCCCAGAGTATCATTTGACTTAAAGCTTGACATCACGAACAAGCACGTT 352
Query 295 GTCTTGGTCGAGGACATTGTGGATACTGGCAATACACTTAGCTGCCTGATTGAGCACCTA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 353 GTCTTGGTCGAGGACATTGTGGATACTGGCAATACACTTAGCTGCCTGATTGAGCACATG 412
Query 355 AAATTGAAAAAGGCATCATCTGTTTCGGTTTGTACTCTCCTCGACAAGCCATCGAGAAGA 414
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 413 AAAGCAAAAAAGGCGTCATCTGTTTCGGTTTGCACTCTCCTCGACAAGCCATCGAGAAGA 472
Query 415 AAGGTTCATTTTAAGCTGTTTGGGAATGGGAAATTCTACAGTGGTTTTGAA 465
|||||||||| ||||||| |||| || ||||||||||||||||||||||||
Sbjct 473 AAGGTTCATTATAAGCTGGTTGGAAAGGGGAAATTCTACAGTGGTTTTGAA 523
Score = 163 bits (88), Expect = 2e-39
Identities = 94/97 (97%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 466 TGTCCAGATGAATTTGTTGTGGGCTATGGCATGGACTTTGCAGAGCAATACCGCAACCTA 525
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 554 TGTCCAGATGAATTTGTCGTGGGCTATGGCATGGATTTTGCAGAACAATACCGCAACCTA 613
Query 526 TCTTACATTGGCGTATTGAAGCCTGAATATTACATGT 562
|||||||||||||||||||||||||||||||||||||
Sbjct 614 TCTTACATTGGCGTATTGAAGCCTGAATATTACATGT 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27076205233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5