BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339396
Length=2058
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:... 3027 0.0
> AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:26990525-26994259
REVERSE LENGTH=2576
Length=2576
Score = 3027 bits (1639), Expect = 0.0
Identities = 1926/2064 (93%), Gaps = 21/2064 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGCGGCGGTTGCATCTGGAATTGCCCCGACGACGGCCATGGTTGATCAAGT--TC 58
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 276 ATGGCTGCGGCGGTTGCATCTGGAATTGCCCCGACGACGGCCATGGTTGATCAAGTGATC 335
Query 59 CC-AATCAACCGACGGTTGCTGCTGCTCCTCCTCCTCCTTTCCCTGCCGTGAGTCAGATT 117
|| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 336 CCTAATCAACCCACGGTTGCTGCTGCTGCTCCTCCTCCTTTCCCTGCCGTGAGTCAGGTT 395
Query 118 GCGGCGGTTGCGGCTGCTGCTGCTGCCGCGGAGGCTTTGCAAACGCATCCAAACTCGTCT 177
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 396 GCGGCGGTTGCTGCTGCTGCTGCTGCCGCGGAGGCTTTGCAAACCCATCCAAACTCGTCT 455
Query 178 CTCTATGTCGGAGATTTAGATCCGAGTGTCGATGAGCCACAACTGTTGGATCTCTTTAAT 237
|||||||||||||||||||||||||||||| ||||| |||| || |||||||||||||||
Sbjct 456 CTCTATGTCGGAGATTTAGATCCGAGTGTCAATGAGTCACATCTCTTGGATCTCTTTAAT 515
Query 238 CAAGTTGCTCCAGTTCAGACTGTTAGGGTTTGTCGTGATTTGACTCGTCGTTCTCTTGGT 297
||||||||||||||||| | | ||||||||||||||||| |||||| |||||||||||||
Sbjct 516 CAAGTTGCTCCAGTTCACAATCTTAGGGTTTGTCGTGATCTGACTCATCGTTCTCTTGGT 575
Query 298 TACGCTTACGTCAATTTCGCTAACCCTGAAGATGCGAGTCGTGCGATGGATAGTCTCAAC 357
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 576 TACGCTTACGTCAATTTCGCTAACCCTGAAGATGCGAGTCGTGCGATGGAAAGTCTCAAC 635
Query 358 TATGCTCCGATCAGGGACAGGCCTATAAGGATCATGCTCTCGAATCGTGATCCGAGCACT 417
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 636 TATGCTCCGATCAGAGACAGGCCTATAAGGATCATGCTCTCTAATCGTGATCCGAGCACT 695
Query 418 CGATTGAGTGGAAAAGGCAATGTTTTCATCAAAAACCTCGATCCATCGATCGATAACAAA 477
|||||||||| |||||||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct 696 AGATTGAGTGGGAAAGGCAATGTTTTCATCAAAAACCTTGATGCATCGATTGATAACAAA 755
Query 478 GCTTTGTATGAAACATTCTCGGCTTTCGGGACTATCCTCTCTTGCAAGGTTGCAATGGAT 537
|||||||||||||| |||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 756 GCTTTGTATGAAACTTTCTCGTCTTTCGGGACGATTCTCTCTTGCAAGGTTGCAATGGAT 815
Query 538 GCGGTGGGACGTTCGAAAGGATATGGCTTTGTCCAGTTTGAGAAAGAGGAAACCGCTCAG 597
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 GTGGTGGGACGTTCGAAAGGATATGGCTTTGTCCAGTTTGAGAAAGAGGAAACCGCTCAG 875
Query 598 GCTGCTATTGACAAGCTTAATGGCATGTTGCTTAATGATAAGCAAGTCTTTGTTGGCCAT 657
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 876 GCTGCTATTGACAAGCTTAATGGTATGTTGCTTAATGATAAGCAAGTCTTTGTTGGCCAT 935
Query 658 TTTGTTCGTCGTCAGGACAGGTCTCGTAGTGAGAGCGGTGCGGTGCCGCGTTTCACTAAT 717
||||| |||||||| |||||| | ||||||||||| |||||||||||| | ||||||||
Sbjct 936 TTTGTCCGTCGTCAAGACAGGGCACGTAGTGAGAGTGGTGCGGTGCCGAGCTTCACTAAC 995
Query 718 GTTTATGTTAAGAATCTTCCTAAGGAGATTACTGATGATGAGCTTAAGAAGACTTTTGGG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 GTTTATGTTAAGAATCTTCCTAAGGAGATTACTGATGATGAGCTTAAGAAGACTTTTGGG 1055
Query 778 AAATATGGAGATATCTCTAGTGCGGTTGTGATGAAAGATCAGAGTGGGAACTCGAGGTCT 837
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1056 AAATATGGAGATATTTCTAGTGCGGTTGTGATGAAGGATCAGAGTGGGAACTCGAGGTCT 1115
Query 838 TTCGGGTTTGTGAACTTTGAGAGCCCTGAAGCTGCTGCCGTTGCGGTTGAAAAGATGAAC 897
||||||||||| ||||||| |||||||||||||||||| ||||| |||||||||||||||
Sbjct 1116 TTCGGGTTTGTCAACTTTGTGAGCCCTGAAGCTGCTGCAGTTGCTGTTGAAAAGATGAAC 1175
Query 898 GGTATCAGCCTTGGGGAGGATGTGTTGTATGTTGGGAGGGCACAGAAGAAGTCTGAGAGG 957
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1176 GGTATCAGCCTTGGGGAGGATGTGTTGTATGTTGGTAGGGCACAGAAGAAGTCTGATAGG 1235
Query 958 GAAGAGGAATTGAGGAGAAAGTTTGAGCAAGAGAGGATAAGCAGGTTTGAGAAATTACAA 1017
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1236 GAAGAGGAATTGAGGAGGAAGTTTGAGCAAGAGAGGATAAGCAGGTTTGAGAAATTGCAA 1295
Query 1018 GGATCAAATCTGTATTTGAAGAACCTTGATGATAGCGTGAATGATGAGAAGCTCAAGGAG 1077
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1296 GGATCGAATCTGTATTTGAAGAACCTTGATGATAGTGTGAATGATGAGAAGCTCAAGGAG 1355
Query 1078 ATGTTCTCTGAGTATGGGAACGTGACCTCCTGCAAGGTTATGATGAATTCACAAGGTTTG 1137
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1356 ATGTTCTCTGAGTATGGGAATGTGACTTCCTGCAAGGTTATGATGAATTCACAAGGTTTA 1415
Query 1138 AGCAGAGGCTTTGGTTTTGTTGCTTACTCCAGTCCTGAAGAAGCTTCGAG-AGCTTTGAG 1196
|||||||| |||||||||||||||||||||| |||||||||||||| | |||| |||
Sbjct 1416 AGCAGAGGTTTTGGTTTTGTTGCTTACTCCAATCCTGAAGAAGCTTT-ATTAGCTATGAA 1474
Query 1197 TGAAATGAATGGGAAGATGATAGGAAGGAAACCTCTTTACGTTGCTTTTGCTCAACGCAA 1256
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 1475 AGAAATGAATGGGAAGATGATAGGAAGGAAACCTCTTTACGTTGCTTTGGCACAACGTAA 1534
Query 1257 AGAAGAAAGACGGGCTCACCTTCAGACTCTATTTACTCATATCAGATCACCTGGGACAAT 1316
|||||||||| |||||||||||||| |||||||||||| |||||||||||||| |||||
Sbjct 1535 GGAAGAAAGACAGGCTCACCTTCAGAGTCTATTTACTCAAATCAGATCACCTGGAACAAT 1594
Query 1317 GTCGCCAATTCCATCACCAATGCCTGGGTTCCATCATCACCCACCAGGAGGGCCAATGTC 1376
||| ||| |||||||||| ||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1595 GTCACCAGTTCCATCACCGATGTCTGGGTTCCATCATCACCCACCAGGTGGGCCAATGTC 1654
Query 1377 AGGACCACACCACCCAACAATGTACATAGGTCAGAATGGTCAAGGTCTGGTACCCCCACA 1436
|||||||||||| |||| ||| |||||| || || ||||||||| ||||||| ||||
Sbjct 1655 AGGACCACACCATCCAA---TGTTCATAGGCCATAACGGTCAAGGTTTGGTACCTTCACA 1711
Query 1437 ACCTATGGGGTATGGGTACCAAGTTCAGTTCATGCCCGGGGTGCGTCCAGGTGCAGGCCC 1496
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1712 GCCTATGGGGTATGGGTACCAAGTTCAGTTCATGCCTGGGATGCGTCCAGGTGCAGGCCC 1771
Query 1497 GGCTAACTACATGATGCCTTTCCCTCTTCAAAGGCAAACTCAGCCTGGTCCTCGTGTTGG 1556
| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1772 GCCTAACTTCATGATGCCTTTCCCTCTTCAAAGGCAAACTCAGCCTGGCCCTCGTGTTGG 1831
Query 1557 GTTCAGGCGTGGTGCTAATAACATGCAGCAGCACTTCCAACAACAACAAATTCTGCAGCA 1616
||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||
Sbjct 1832 GTTCAGGCGTGGTGCTAATAACATGCAGCAGCAGTTTCAGCAACAACAAATGCTGCAGCA 1891
Query 1617 AAATGCAAGCCCGGGAATGCGATACATGGGAGGCGCAGGCAACAGGAGGAATGGAATGGA 1676
|||||||||| | | | | ||||||||||||||||||||||||||||||||||||
Sbjct 1892 AAATGCAAGCA-G--A-T----T-CATGGGAGGCGCAGGCAACAGGAGGAATGGAATGGA 1942
Query 1677 AGCATCTGCTCCACAAGGCATCATCCCTTTGCCATTGAATGCGTCTGCAATCTCTCACAA 1736
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1943 AGCATCTGCTCCACAAGGCATCATCCCTTTGCCATTGAATGCATCTGCAAACTCTCACAA 2002
Query 1737 TGCTCCTCAACACCCGCATAAGCCACCTCTCCTCACCATTTCCAAGCTTGCATCTGATTT 1796
|||||| |||| | | || |||||| ||| |||||||||||| ||||| |||||||||||
Sbjct 2003 TGCTCCGCAACGCTCTCACAAGCCAACTCCCCTCACCATTTCTAAGCTCGCATCTGATTT 2062
Query 1797 GGCTTTGGCTC-CCCCGGAGAAACACCCACAGATGCTTGGGGAGAACCTTTACCCACTTG 1855
|||||||||| ||||| | |||||||||| |||||||||||| | |||||||||||||
Sbjct 2063 GGCTTTGGCTAGCCCCG-ACAAACACCCACGGATGCTTGGGGATCATCTTTACCCACTTG 2121
Query 1856 TGGCGCAGCAGGAGCCAG-AATATGCGGCCAAAGTTACTGGGATGTTGCTGGAGATGGAT 1914
||| |||||||||||||| || |||| || |||||||| |||||||||||||||||||||
Sbjct 2122 TGGAGCAGCAGGAGCCAGCAA-ATGCTGCTAAAGTTACCGGGATGTTGCTGGAGATGGAT 2180
Query 1915 CAAGCTGAGATTTTGCACCTTCTTGAGTCACCTGAAGCTCTTAAGGCTAAAGTTTCCGAG 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2181 CAAGCTGAGATTTTGCACCTTCTTGAGTCACCTGAAGCTCTTAAGGCTAAAGTGTCCGAG 2240
Query 1975 GCTCTGGATGTTCTCAGACTCTCTGCTAATGCACCAGCTGTGTCATCTGTTGATGACCAG 2034
||||||||||||||||||| ||||||| || || ||||||||||||||||||||||||||
Sbjct 2241 GCTCTGGATGTTCTCAGACGCTCTGCTGATCCAGCAGCTGTGTCATCTGTTGATGACCAG 2300
Query 2035 TTTGCTCTATCCTCAACCGAGTGA 2058
||||||||||||||| ||||||||
Sbjct 2301 TTTGCTCTATCCTCATCCGAGTGA 2324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102007507440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5