BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339406
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71860.1 | Symbols: PTP1, ATPTP1 | protein tyrosine phosphat... 1552 0.0
> AT1G71860.1 | Symbols: PTP1, ATPTP1 | protein tyrosine phosphatase
1 | chr1:27026711-27029092 FORWARD LENGTH=1510
Length=1510
Score = 1552 bits (840), Expect = 0.0
Identities = 969/1031 (94%), Gaps = 10/1031 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACGGGGACAA-CTCCTTCCGCCGCTAATCTTTTCACCAACTCGACGCGTTTCGA 59
|||||||| || | || || |||||||||| ||||||||||| |||||||||||| ||
Sbjct 156 ATGGCGACCGGTAAAACCT-CTTCCGCCGCGAATCTTTTCACTGGCTCGACGCGTTTTGA 214
Query 60 TTTCTCAGCCGCTGATGCGCCTCCTACAAAACTCTCTCTCTCCCCCGATCAGCTCAATCA 119
||| ||| |||||||| |||||||| ||||||||||||||||| ||||||||||||| ||
Sbjct 215 TTTATCATCCGCTGATTCGCCTCCTTCAAAACTCTCTCTCTCCTCCGATCAGCTCAACCA 274
Query 120 CTGCCACCAAGCTCTCGGCGTTTTCCGGGGAAAGATCCAAGATCCCGACTCGATCGCTCA 179
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 275 CTGCCACCAAGCTCTCGGCGTTTTCCGGGGAAAGATCCAAAATCCTGACTCGATCGCTCA 334
Query 180 TGAGTTTTCCGGTTTACAGGCTAATAGGATGTGGCCATCGGAGATGCTGCTAAATTGTAC 239
||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 335 TGAGTTTACCGGTTTACAGGCTAATAGGATGTGGCCATCGGAGCTGCTGCTAAACAGTAC 394
Query 240 AGTGGCTATGAACAGTGTCAATATTGAGAAAAACAGATATAGTGATGTTGTTCCATTTGA 299
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 395 AGTGGCTATGAACAGTGTCAATGTTGAGAAAAACAGATACAGTGATGTTGTTCCATTTGA 454
Query 300 CAAGAACAGGATTGTTCTGAATCCATGTAAAGACTATAGATCATCTGCAAAAGGATATGT 359
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 455 CAAGAACAGGATTGTTCTGAATCCATGTAAAGAC------TCATCTGCAAAAGGATATGT 508
Query 360 GAATGCAAGCTTAATTAAGACGTCGGATTCTGAGAGTATTTCTCAGTTCATAGCTACGCA 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 509 GAATGCAAGCTTAATTAAGACGTCGGAGTCTGAGAGTATTTCTCAGTTCATAGCTACGCA 568
Query 420 AGGTCCTTTACCACACACGATGGAGGACTTCTGGGAGATGGTTATTCAGCAGCATTGCCC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 AGGTCCTTTACCACACACGATGGAGGACTTCTGGGAGATGGTTATTCAGCAGCATTGCCC 628
Query 480 AATCATTGTCATGCTCACTCGATTGGTTGACAATAATCTGACTGTTAAATGCGGGGACTA 539
|||||| || |||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 629 AATCATAGTGATGCTCACTCGATTGGTTGATAATAATAGGACTGTTAAATGCGGGGACTA 688
Query 540 TTTTCAAGCCGAAGATGGACCTAGAGAATTTGGCAACATATCTGTTACGACAAAATGGAC 599
|||||||| |||||||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 689 TTTTCAAGACGAAGATGGACCTAGAGAATTTGGCAACATATCTCTTACAACAAAGTGGAT 748
Query 600 AAAGTCTACTGACACTTCATTGATGTTACGGAATCTTGAGGTTAACTACAAGGAGACAGA 659
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 AAAGACTACTGACACTTCATTGATGTTACGGAATCTTGAGGTTAACTACAAGGAGACAGA 808
Query 660 GAATCAGCCCATGTCCGTTTTGCATATTCAGTATCCAGAGTGGCCTGATCATGGAGTTCC 719
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 809 GGATCAGCCCATGTCCGTTTTGCATATTCAGTATCCAGAATGGCCTGATCATGGAGTTCC 868
Query 720 CAGGGATACTTTGGCTGTCCGTGAAATTCTAAAAAGATTATATCAAGTACCTCCTAGTCT 779
|| |||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 869 CAAGGATACAGTGGCTGTCCGTGAAATTCTAAAAAGACTATATCAAGTACCACCTAGTCT 928
Query 780 CGGCCCAATCATTGTGCACTGCAGTGCAGGCATAGGAAGAACCGGAACATACTGTGCCAT 839
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 929 CGGCCCAATCATTGTGCACTGCAGTGCAGGTATAGGAAGAACTGGAACATACTGTGCGAT 988
Query 840 ACATAACACAATCCAGAGAATTCTTGCTGGCGATATGACTGCGTTGGATCTTGCTAAAAC 899
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 989 ACATAACACAATCCAAAGAATTCTTGCTGGCGATATGTCTGCGTTGGATCTTGCTAAAAC 1048
Query 900 CGTGGCAATATTCCG-AAGCCAACGCATTGGCATGGTTCAAACCATGGATCAATACTTCT 958
||||||| |||| || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1049 CGTGGCACTATTTCGCAAGC-AACGCATTGGCATGGTTCAAACCATGGATCAATACTTCT 1107
Query 959 TTTGCTACACCGCTATTGTTGATGAATTAGAAGATCTAACCGCGGGGACAGATGCTGGAA 1018
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1108 TTTGCTACAATGCTATTGTTGATGAATTAGAAGATCTAACCGCGGGGACAAATGCTGGAA 1167
Query 1019 CGAGTTCTTAA 1029
||||||| |||
Sbjct 1168 CGAGTTCCTAA 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5