BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg339406 Length=1029 Score E Sequences producing significant alignments: (Bits) Value AT1G71860.1 | Symbols: PTP1, ATPTP1 | protein tyrosine phosphat... 1552 0.0 > AT1G71860.1 | Symbols: PTP1, ATPTP1 | protein tyrosine phosphatase 1 | chr1:27026711-27029092 FORWARD LENGTH=1510 Length=1510 Score = 1552 bits (840), Expect = 0.0 Identities = 969/1031 (94%), Gaps = 10/1031 (1%) Strand=Plus/Plus Query 1 ATGGCGACGGGGACAA-CTCCTTCCGCCGCTAATCTTTTCACCAACTCGACGCGTTTCGA 59 |||||||| || | || || |||||||||| ||||||||||| |||||||||||| || Sbjct 156 ATGGCGACCGGTAAAACCT-CTTCCGCCGCGAATCTTTTCACTGGCTCGACGCGTTTTGA 214 Query 60 TTTCTCAGCCGCTGATGCGCCTCCTACAAAACTCTCTCTCTCCCCCGATCAGCTCAATCA 119 ||| ||| |||||||| |||||||| ||||||||||||||||| ||||||||||||| || Sbjct 215 TTTATCATCCGCTGATTCGCCTCCTTCAAAACTCTCTCTCTCCTCCGATCAGCTCAACCA 274 Query 120 CTGCCACCAAGCTCTCGGCGTTTTCCGGGGAAAGATCCAAGATCCCGACTCGATCGCTCA 179 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 275 CTGCCACCAAGCTCTCGGCGTTTTCCGGGGAAAGATCCAAAATCCTGACTCGATCGCTCA 334 Query 180 TGAGTTTTCCGGTTTACAGGCTAATAGGATGTGGCCATCGGAGATGCTGCTAAATTGTAC 239 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 335 TGAGTTTACCGGTTTACAGGCTAATAGGATGTGGCCATCGGAGCTGCTGCTAAACAGTAC 394 Query 240 AGTGGCTATGAACAGTGTCAATATTGAGAAAAACAGATATAGTGATGTTGTTCCATTTGA 299 |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 395 AGTGGCTATGAACAGTGTCAATGTTGAGAAAAACAGATACAGTGATGTTGTTCCATTTGA 454 Query 300 CAAGAACAGGATTGTTCTGAATCCATGTAAAGACTATAGATCATCTGCAAAAGGATATGT 359 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 455 CAAGAACAGGATTGTTCTGAATCCATGTAAAGAC------TCATCTGCAAAAGGATATGT 508 Query 360 GAATGCAAGCTTAATTAAGACGTCGGATTCTGAGAGTATTTCTCAGTTCATAGCTACGCA 419 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 509 GAATGCAAGCTTAATTAAGACGTCGGAGTCTGAGAGTATTTCTCAGTTCATAGCTACGCA 568 Query 420 AGGTCCTTTACCACACACGATGGAGGACTTCTGGGAGATGGTTATTCAGCAGCATTGCCC 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 569 AGGTCCTTTACCACACACGATGGAGGACTTCTGGGAGATGGTTATTCAGCAGCATTGCCC 628 Query 480 AATCATTGTCATGCTCACTCGATTGGTTGACAATAATCTGACTGTTAAATGCGGGGACTA 539 |||||| || |||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 629 AATCATAGTGATGCTCACTCGATTGGTTGATAATAATAGGACTGTTAAATGCGGGGACTA 688 Query 540 TTTTCAAGCCGAAGATGGACCTAGAGAATTTGGCAACATATCTGTTACGACAAAATGGAC 599 |||||||| |||||||||||||||||||||||||||||||||| |||| ||||| |||| Sbjct 689 TTTTCAAGACGAAGATGGACCTAGAGAATTTGGCAACATATCTCTTACAACAAAGTGGAT 748 Query 600 AAAGTCTACTGACACTTCATTGATGTTACGGAATCTTGAGGTTAACTACAAGGAGACAGA 659 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 749 AAAGACTACTGACACTTCATTGATGTTACGGAATCTTGAGGTTAACTACAAGGAGACAGA 808 Query 660 GAATCAGCCCATGTCCGTTTTGCATATTCAGTATCCAGAGTGGCCTGATCATGGAGTTCC 719 | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 809 GGATCAGCCCATGTCCGTTTTGCATATTCAGTATCCAGAATGGCCTGATCATGGAGTTCC 868 Query 720 CAGGGATACTTTGGCTGTCCGTGAAATTCTAAAAAGATTATATCAAGTACCTCCTAGTCT 779 || |||||| |||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 869 CAAGGATACAGTGGCTGTCCGTGAAATTCTAAAAAGACTATATCAAGTACCACCTAGTCT 928 Query 780 CGGCCCAATCATTGTGCACTGCAGTGCAGGCATAGGAAGAACCGGAACATACTGTGCCAT 839 |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || Sbjct 929 CGGCCCAATCATTGTGCACTGCAGTGCAGGTATAGGAAGAACTGGAACATACTGTGCGAT 988 Query 840 ACATAACACAATCCAGAGAATTCTTGCTGGCGATATGACTGCGTTGGATCTTGCTAAAAC 899 ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 989 ACATAACACAATCCAAAGAATTCTTGCTGGCGATATGTCTGCGTTGGATCTTGCTAAAAC 1048 Query 900 CGTGGCAATATTCCG-AAGCCAACGCATTGGCATGGTTCAAACCATGGATCAATACTTCT 958 ||||||| |||| || |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1049 CGTGGCACTATTTCGCAAGC-AACGCATTGGCATGGTTCAAACCATGGATCAATACTTCT 1107 Query 959 TTTGCTACACCGCTATTGTTGATGAATTAGAAGATCTAACCGCGGGGACAGATGCTGGAA 1018 ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1108 TTTGCTACAATGCTATTGTTGATGAATTAGAAGATCTAACCGCGGGGACAAATGCTGGAA 1167 Query 1019 CGAGTTCTTAA 1029 ||||||| ||| Sbjct 1168 CGAGTTCCTAA 1178 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50435083588 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5