BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339407
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71870.1 | Symbols: | MATE efflux family protein | chr1:270... 2244 0.0
AT2G16905.1 | Symbols: | pseudogene, similar to putative MATE ... 449 3e-125
> AT1G71870.1 | Symbols: | MATE efflux family protein | chr1:27032456-27034895
REVERSE LENGTH=1533
Length=1533
Score = 2244 bits (1215), Expect = 0.0
Identities = 1416/1511 (94%), Gaps = 22/1511 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGACAAAACT-CAATCAGATGAATTCATTTCCCATAAAAACCCAACTCTTCCTCA 59
|||| |||||||| | || |||||||| |||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAAGACAAAA-TCCAGTCAGATGATTTCACTTCCCATAAAAACCCAACTCTTCCTCA 59
Query 60 AGTTATAGAAGAGCTAAAAGAGCTCTGGGCTATGGTTTTACCAATCACAGCAATGAACTG 119
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGTCATTGAAGAGCTAAAAGAGCTCTGGGCTATGGTTTTACCAATCACAGCAATGAACTG 119
Query 120 TCTTGTCTACGTACGCGCCGTCGTGTCTGTTCTCTTCCTCGGCCGGCTTGGCAGCCTTGA 179
|||||||||||| |||||||||||||||||||||||||||||||| || || ||||| ||
Sbjct 120 TCTTGTCTACGTGCGCGCCGTCGTGTCTGTTCTCTTCCTCGGCCGTCTCGGTAGCCTCGA 179
Query 180 GCTAGCCGGAGGAGCTCTCTCCATCGGATTCACCAACATCACAGGCTACTCTGTTCTCGT 239
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 180 GTTAGCCGGAGGAGCTCTCTCCATCGGATTCACCAACATCACAGGATACTCTGTTATGGT 239
Query 240 TGGACTCGCCTCGGGTCTCGAGCCAGTGTGTAGCCAAGCCTACGGTAGCAAAAACTGGGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGGACTCGCCTCGGGTCTCGAGCCAGTGTGTAGCCAAGCCTACGGTAGCAAAAACTGGGA 299
Query 300 TCTCCTTACGCTCTCTCTCCATCGTATGGTCGTGATTCTCTTAATCGCCTCTGTTCCCAT 359
|||||| ||||||||||| || ||||||||||||||||||||||| |||||| | |||||
Sbjct 300 TCTCCTCACGCTCTCTCTTCACCGTATGGTCGTGATTCTCTTAATGGCCTCTCTGCCCAT 359
Query 360 TAGCCTCCTCTGGATCAACCTTGGACCCATCATGCTTTTCATGGGTCAAAACCCAGAGAT 419
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 AAGCCTCCTTTGGATCAACCTTGGACCCATCATGCTTTTCATGGGTCAAAACCCGGAGAT 419
Query 420 AACGGCTACGGCCGCTGAGTATTGTCTCTACGCCCTTCCTGATCTTTTGAACAATACTCT 479
||| ||||| || ||||| |||||||||||||| |||||||||||||||| |||||||||
Sbjct 420 AACCGCTACAGCGGCTGAATATTGTCTCTACGCGCTTCCTGATCTTTTGACCAATACTCT 479
Query 480 GCTTCAGCCGTTAAGAGTTTATCTAAGGTCGCAGCGAGTGACGAAACCGATGATGTGGTG 539
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CCTTCAGCCGTTACGTGTTTATCTAAGGTCGCAGCGAGTGACGAAACCGATGATGTGGTG 539
Query 540 TACGTTAGCAGCGGTGGCGTTTCACGTGCCGTTGAATTATTGGCTTGTGATGGTGAAGCG 599
|||| ||||||| |||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 540 TACGCTAGCAGCAGTGGCGTTCCATGTGCCATTGAATTATTGGCTTGTGATGGTGAAGCA 599
Query 600 TTGGGGTGTTCCTGGTGTGGCTATTGCGTCTGTTGTGACGAATTTGATCATGGTTGTGCT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGGGGTGTTCCTGGTGTGGCTATTGCGTCTGTTGTGACGAATTTGATCATGGTTGTGCT 659
Query 660 TTTGGTTGGATATGTTTGGTTTAGTGGGATGTTGCAG-A-AGA--CA---GTGA----G- 707
||||||||| ||||||||| ||||||||||||||||| | ||| | |||| |
Sbjct 660 TTTGGTTGGTTATGTTTGGGTTAGTGGGATGTTGCAGAAGAGAGTGAGTGGTGATGGTGA 719
Query 708 TGGTGGG--T-CTACGGTGGTGGC---GGTGGCTCAGTCGTCGTCTGT-ATTGGAGTTGG 760
||||||| | ||||| ||||||| ||||||||||||||||||||| | |||||||||
Sbjct 720 TGGTGGGTCTACTACGATGGTGGCGGTGGTGGCTCAGTCGTCGTCTGTGA-TGGAGTTGG 778
Query 761 TTGGAGGGTTGGGACCGTTGATGAGAGTGGCGGTTCCGAGTTGTTTGGGGATATGTTTGG 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTGGAGGGTTGGGACCGTTGATGAGAGTGGCGGTTCCGAGTTGTTTGGGGATATGTTTGG 838
Query 821 AGTGGTGGTGGTATGAGATTGTGATTGTGATGGGTGGTTACTTGGAGAATCCTAAACTTG 880
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 839 AATGGTGGTGGTATGAGATTGTGATTGTGATGGGTGGTTACTTGGAGAATCCTAAGCTTG 898
Query 881 CGGTGGCTGCCACTGGGATTTTGATTCAGACTACGAGTCTTATGTATACTGTTCCTATGG 940
| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 899 CTGTGGCTGCCACTGGGATTTTGATTCAGACTACTAGTCTTATGTATACGGTTCCTATGG 958
Query 941 CTTTAGCTGGATGCGTCTCTGCTCGGGTTGGAAACGAGCTCGGTGCAGGTAGACCGTACA 1000
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 959 CTTTAGCTGGATGCGTCTCTGCTCGGGTTGGGAACGAGCTCGGTGCAGGTAGACCTTACA 1018
Query 1001 AAGCGAGACTAGCAGCGAACGTGGCTCTAGCTTGCGCGTTTGTAGTAGGAGCATTGAATG 1060
| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGGCCAGACTAGCCGCGAACGTGGCTCTAGCTTGCGCGTTTGTAGTAGGAGCATTGAATG 1078
Query 1061 TGACTTGGACGGTTGTTCTTAAAGAGCGTTGGGCTGGACTATTCACTGGCTACGAGCCAC 1120
|| ||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1079 TGGCTTGGACGGTTATTCTAAAAGAGCGTTGGGCTGGACTATTCACTGGCTATGAGCCAC 1138
Query 1121 TCAAGGTATTGGTTGCTTCGGTTATGCCAATCGTCGGGCTATGCGAGCTAGGGAATTGCC 1180
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1139 TCAAGGTCTTGGTTGCTTCGGTTATGCCAATTGTCGGGCTATGCGAGCTAGGGAATTGTC 1198
Query 1181 CGCAAACCACGGGCTGCGGGATTCTTAGGGGGACAGGTCGGCCTGCGGTTGGGGCACATG 1240
| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1199 CACAGACCACGGGCTGCGGGATTCTTAGAGGGACAGGTCGGCCTGCGGTTGGGGCACATG 1258
Query 1241 TGAATCTCGGGTCGTTTTATTTCGTTGGGACTCCCGTGGCGGTTGGACTAGCGTTTTGGT 1300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1259 TGAATCTCGGGTCGTTTTATTTCGTTGGGACTCCCGTGGCAGTTGGACTAGCGTTTTGGT 1318
Query 1301 TGAAAATTGGGTTTAGTGGGTTGTGGTTTGGATTGCTTTCGGCTCAAGCGGCTTGCGTGG 1360
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1319 TGAAAATTGGGTTTAGTGGGTTGTGGTTTGGGTTGCTTTCAGCTCAAGCGGCTTGCGTGG 1378
Query 1361 TTTCGATATTGTATGCGGTTTTGGCAAGGACTGATTGGGAAGGGGAAGCAGTGAGGGCAA 1420
||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||
Sbjct 1379 TTTCGATATTGTATGCGGTTTTGGCGAGGACGGATTGGGAAGGGGAAGCCGTGAAGGCAA 1438
Query 1421 TGAGACTGACGAGTTTGGAGATGAGGAAAGTTGGAAAAGATGAAGAGTCGTCATTGTTGT 1480
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
Sbjct 1439 TGAGACTGACGAGTTTGGAGATGAGGAAAGTTGGACAAGATGAAGAGTCTTCATTGTTAT 1498
Query 1481 TGTTGGATGAT 1491
|||||||||||
Sbjct 1499 TGTTGGATGAT 1509
> AT2G16905.1 | Symbols: | pseudogene, similar to putative MATE
efflux membrane protein, blastp match of 50% identity and
7.3e-40 P-value to GP|28376699|gb|AAO41129.1||AC104487 putative
MATE efflux membrane protein {Oryza sativa (japonica cultivar-group)}
| chr2:7327323-7328985 REVERSE LENGTH=1663
Length=1663
Score = 449 bits (243), Expect = 3e-125
Identities = 315/350 (90%), Gaps = 4/350 (1%)
Strand=Plus/Plus
Query 365 TCCTCTGGATCAACCTTGGACCCATCATGCTTTTCATGGGTCAAAACCCAGAGATAACGG 424
|||| ||||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct 488 TCCTTTGGATTAACCTTGGACCCATCATGCTCTTCGTGGGTCAAAACCCGGAGATAACGG 547
Query 425 CTACGGCCGCTGAGTATTGTCTCTACGCCCTTCCTGA-TCTTTTGAACAATACTCTGCTT 483
|||| ||||||||||| ||||| || || |||||| | | |||| | |||||||||||||
Sbjct 548 CTACAGCCGCTGAGTACTGTCTTTATGCACTTCCT-ATTTTTTTTACCAATACTCTGCTT 606
Query 484 CAGCCGTTAAGAGTTTATCTAAGGTCGC-AGCGAGTGACGAAACCGATGATGTGGTGTAC 542
||||||||| |||||||||||||||| | |||||||||| ||||| ||||||||||||||
Sbjct 607 CAGCCGTTACGAGTTTATCTAAGGTC-CTAGCGAGTGACTAAACCAATGATGTGGTGTAC 665
Query 543 GTTAGCAGCGGTGGCGTTTCACGTGCCGTTGAATTATTGGCTTGTGATGGTGAAGCGTTG 602
|||| ||| ||| ||| || |||||||||||||||||||||||||||||||||| |||
Sbjct 666 TTTAGTAGCTATGGTGTTCCATGTGCCGTTGAATTATTGGCTTGTGATGGTGAAGCATTG 725
Query 603 GGGTGTTCCTGGTGTGGCTATTGCGTCTGTTGTGACGAATTTGATCATGGTTGTGCTTTT 662
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 726 GGGTGTTCTTGGTGTGGCTATTGCATCTGTTGTGACGAATTTGATCATGGTTGTGCTTTT 785
Query 663 GGTTGGATATGTTTGGTTTAGTGGGATGTTGCAGAAGACAGTGAGTGGTG 712
|||||| ||||||||| | ||||||||||||| ||||| |||||||||||
Sbjct 786 GGTTGGTTATGTTTGGATGAGTGGGATGTTGCGGAAGAGAGTGAGTGGTG 835
Score = 272 bits (147), Expect = 7e-72
Identities = 163/171 (95%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 798 GAGTTGTTTGGGGATATGTTTGGAGTGGTGGTGGTATGAGATTGTGATTGTGATGGGTGG 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GAGTTGTTTGGGGATATGTTTGGAGTGGTGGTGGTATGAGATTGTGATTGTGATGGGTGG 945
Query 858 TTACTTGGAGAATCCTAAACTTGCGGTGGCTGCCACTGGGATTTTGATTCAGACTACGAG 917
||||||||||||||||| |||| |||||||||||||| ||||||||||||||||| ||
Sbjct 946 ATACTTGGAGAATCCTAAGCTTGTTGTGGCTGCCACTGGAATTTTGATTCAGACTACTAG 1005
Query 918 TCTTATGTATACTGTTCCTATGGCTTTAGCTGGATGCGTCTCTGCTCGGGT 968
|||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1006 TCTTATGTATACTGTTCCTACGGCTTTAGCTGAATGCGTCTCTGCTCGGGT 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75501619680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5