BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg339423

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G72020.1 | Symbols:  | unknown protein; Has 52 Blast hits to...   333    7e-91


> AT1G72020.1 | Symbols:  | unknown protein; Has 52 Blast hits 
to 52 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:27109291-27110431 REVERSE 
LENGTH=628
Length=628

 Score =  333 bits (180),  Expect = 7e-91
 Identities = 200/209 (96%), Gaps = 3/209 (1%)
 Strand=Plus/Plus

Query  166  GTGAGTAGAAGCTTCCACTCGACTGGAGTTAAGAAGATGAGCGGAGGAGGACA---TGAT  222
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||   || |
Sbjct  177  GTGACTAGAAGCTTCCACTCGACTGGAGTTAAGAAGATGAGCGGAGGAGGACATGGTGGT  236

Query  223  TACGACGAATACTACCTCCACGCAAAACACATGTACAATTTGGACCGCATGAAGTACCAA  282
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  237  TACGATGAATACTACCTCCACGCAAAACACATGTACAATTTGGACCGCATGAAGTACCAA  296

Query  283  GCTCTCAAGATGTCTCTCGGTGTCTTTACCGCTTTCAGCATCGGTGTCGGGGTTCCTATC  342
            ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct  297  GCTCTCAAGATGTCTCTCGGTGTATTCACCGCTTTCAGCATCGGTGTTGGGGTTCCTATC  356

Query  343  TTCGCAGTCGTTTTCCAGCAGAGGAAGAC  371
            |||||||||||||||||||||||||||||
Sbjct  357  TTCGCAGTCGTTTTCCAGCAGAGGAAGAC  385


 Score =  119 bits (64),  Expect = 2e-26
 Identities = 70/73 (96%), Gaps = 0/73 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGTTGAGCACCAGCATCAGATCTGTCTCTAAGATCATTGCTTCATCCGAAGCATCA  60
            ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  105  ATGGCGTTGAGCACCAGCATCAGATCTGTATCTAAGATCATTGCTTCTTCCGAAGCATCA  164

Query  61   GTTTCCAGATCTG  73
            || ||||||||||
Sbjct  165  GTCTCCAGATCTG  177



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18096389640


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5