BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339433
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72130.1 | Symbols: | Major facilitator superfamily protein... 695 0.0
> AT1G72130.1 | Symbols: | Major facilitator superfamily protein
| chr1:27137181-27139384 FORWARD LENGTH=1798
Length=1798
Score = 695 bits (376), Expect = 0.0
Identities = 539/617 (87%), Gaps = 14/617 (2%)
Strand=Plus/Plus
Query 741 CAGTTCAATTTCATCAGGACTCTTAGTCCCTGCAGCTACACTCCAAAGTATCTC-T-AGT 798
||| ||||| ||| ||||||||||||| |||||||||||||| |||||| | || | |
Sbjct 1028 CAGGTCAATCTCACCAGGACTCTTAGTTCCTGCAGCTACACTTCAAAGT-T-TCATAAAC 1085
Query 799 CTATCAATGGTCGTTTTCATCCCAATCTACGACCGTCTT-CTTGTCCCTA-TCGCAAGAT 856
|| ||| | |||||||||||||||||||||||||| ||| || ||||| | ||||||| |
Sbjct 1086 CTCTCAGTAGTCGTTTTCATCCCAATCTACGACCG-CTTACTCGTCCC-ATTCGCAAGGT 1143
Query 857 CCTTAACTCAAAAAC-CATCAGGAATCACAATGCTTCAAAGGATCGACACAGGGATTTTC 915
|||| |||| ||||| ||||||| ||||||| ||| |||||||| | ||||||||||||
Sbjct 1144 CCTTCACTC-AAAACTCATCAGGTATCACAACGCTACAAAGGATTGGTACAGGGATTTTC 1202
Query 916 CTCTCCATTCTTGCTATGGTAGTAGCCGCCTTGGTCGAGACCAAAAGGCTACAAACCGCT 975
||||||||||||||||||||| ||||||| ||||||||||| |||||||| ||| ||||
Sbjct 1203 CTCTCCATTCTTGCTATGGTATTAGCCGCATTGGTCGAGACAAAAAGGCTCCAAGCCGCC 1262
Query 976 CATGATGATGTCACAATTCTAATGAGTGTGTGGTGGCTGGTTCCGCAGTATGTTATCTAT 1035
| ||||| || | || | ||||| |||||||||||| |||| ||||||||||||| |
Sbjct 1263 CGGGATGAACTCTCCATACCGATGAGCGTGTGGTGGCTGATTCCACAGTATGTTATCTTT 1322
Query 1036 GGAGTCTCGA-ACGTCTTCACAATGGTGGGTTTGCAAGAGTTCTTCTACGACCAAGTTCC 1094
|||||||| | | | ||||||||||||||||| |||||||||||||||| |||||| ||
Sbjct 1323 GGAGTCTC-AGATATGTTCACAATGGTGGGTTTACAAGAGTTCTTCTACGGCCAAGTCCC 1381
Query 1095 TAGTGAGCTTAGGAGCGTTGGTATGGCTCTGAATCTAAGCATATACGGGACCGGAAACTT 1154
|||||||||||||||||||||||||||| |||| ||||||||||||||| | |||||||
Sbjct 1382 TAGTGAGCTTAGGAGCGTTGGTATGGCTTTGAACCTAAGCATATACGGGGCGGGAAACTA 1441
Query 1155 CGTAAGCAGCTTCATGATATCAGTCATTGATAAAGTCACAAACCAAG-CTGGTCAAACGA 1213
| |||||||||| ||||||||||||||||||||| |||| |||| || |||||||| ||
Sbjct 1442 CCTAAGCAGCTTTATGATATCAGTCATTGATAAAATCACGAACC-AGTATGGTCAAAGGA 1500
Query 1214 GCTGGTTCAATAATGACTTGAACCAAGCTCATCTAGATTACTTCTACTGGCTACTCGCTT 1273
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1501 GCTGGTTCGATAATGACTTGGACCAAGCTCATCTAGATTACTTCTACTGGCTACTGGCTT 1560
Query 1274 GTCTCAGCTTCATTGGTTTAGCCTCCTATTTATGGTTCGCCAAGTCATATGTCTACAACA 1333
||||| ||||||||||||| |||| ||| |||||||||||||||||||||||||||| ||
Sbjct 1561 GTCTCGGCTTCATTGGTTTCGCCTTCTACTTATGGTTCGCCAAGTCATATGTCTACAGCA 1620
Query 1334 GACCAAACACCTTTTAA 1350
|| ||||||||||||||
Sbjct 1621 GATCAAACACCTTTTAA 1637
Score = 385 bits (208), Expect = 7e-106
Identities = 244/261 (93%), Gaps = 4/261 (2%)
Strand=Plus/Plus
Query 387 TCAGCTCCAAGTGACTCTCTTCTTCTGCTCTCTGTATCTTGTAGCAATAGGACAAGGCGG 446
|||||| |||| |||| ||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 407 TCAGCTGCAAGAGACTATCTTCTTCTTCTCTCTTTATCTTGTAGCAATAGGACAAGGCGG 466
Query 447 TTACACCCCGTGTATTAAGGTATTTGGAGCGGATCAATTCGATGGAAATGATCTA-AAAG 505
||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 467 TTACAACCCGTGTATTAAGGTATTTGGAGCGGATCAATTCGATGGAAATGATC-ATAAAG 525
Query 506 AGGCAAAG-GACAAGAGTTCTTTCTTCAACTGGTTGATGTTTGGAAACTGTATTAGCATA 564
|||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 526 AGGC-AAGAGACAAGAGTTCATTCTTCAACTGGTTGATGTTTGGAAACTGTATTAGCATA 584
Query 565 TTGACGACTCGTTTGGTCTCTACCTACATTCAAGAGAACTTAAGCTGGTCATTAGGATTT 624
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||
Sbjct 585 TTGACGACTCGTTTGGTCTCTACCTACATTCAAGAGAACCTAAGCTGGTCACTAGGGTTT 644
Query 625 GGTATCCCAAGTGTTTTCATG 645
||||| || ||||||| ||||
Sbjct 645 GGTATTCCTAGTGTTTCCATG 665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5