BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339434
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72130.1 | Symbols: | Major facilitator superfamily protein... 1463 0.0
AT1G72131.1 | Symbols: | pseudogene of proton-dependent oligop... 1251 0.0
> AT1G72130.1 | Symbols: | Major facilitator superfamily protein
| chr1:27137181-27139384 FORWARD LENGTH=1798
Length=1798
Score = 1463 bits (792), Expect = 0.0
Identities = 1300/1541 (84%), Gaps = 52/1541 (3%)
Strand=Plus/Plus
Query 86 CCTCTGGAGGATGGAAATCGGCCAGGCTAATCATCGGTGT-CGAAATGGCGGAACAG-TT 143
|||| || ||||||||||| || ||||| ||||||| ||| | |||||||||| | | ||
Sbjct 94 CCTCCGGTGGATGGAAATCAGCGAGGCTCATCATCGTTGTAC-AAATGGCGGAGC-GATT 151
Query 144 CGCCTT--TTACGGGATTTCCTCGAACTTGATAACGTATC-TGACCGGACCACTGGGGGA 200
|| ||| || || || | || ||| | |||| ||| | |||| ||||| | || ||
Sbjct 152 CG-CTTACTT-TGGTATAGCGTCAAACCTAATAATGTA-CTTGACGGGACCGTTAGGTGA 208
Query 201 GTCAACAGCTGCCGCTGCAGCCAATGTCAACGCATGGACTGGAACGGTGTCGTTTCTGCC 260
|||||||||||| || ||||| |||||||| || ||||||||||||||| ||||||||||
Sbjct 209 GTCAACAGCTGCAGCGGCAGCGAATGTCAATGCTTGGACTGGAACGGTGGCGTTTCTGCC 268
Query 261 CCTTCTCTGGGGCTTTATCGCTGACTCGTTTCTTGGACGTTTCCGTACAATCGTGATCGC 320
|||||| |||||||| |||||||||||| ||| || ||||||||||| || | ||| |
Sbjct 269 GCTTCTCGGGGGCTTTCTCGCTGACTCGTATCTCGGTCGTTTCCGTACTATAATCATCTC 328
Query 321 GTCTTCTCTCTATATCTTGGGACTTGGGTTGCTGTCTTTTTCAGCCATGGCTCCTTCTAA 380
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 329 ATCTTCTCTCTATATCTTGGGACTTGGGTTGCTGTCTTTTTCAACCATGATTCCTTCTCA 388
Query 381 -C--TCTAAAGATCCAAATCAACTCCAAGTGATTCTCTTCTTCTGCTCTCTGTATCTTAT 437
| || |||||| | ||||| || |||| || | ||||||||| |||||| |||||| |
Sbjct 389 TCAGTCCAAAGATTCGAATCAGCTGCAAGAGACTATCTTCTTCTTCTCTCTTTATCTTGT 448
Query 438 AGCAATAGGACAAGGCGGTTACAAACCGTGTATTAAGGTATTTGGAGCAGATCAATTCGA 497
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 449 AGCAATAGGACAAGGCGGTTACAACCCGTGTATTAAGGTATTTGGAGCGGATCAATTCGA 508
Query 498 TGGAAATGATC-TCAAAGAGGCAAAAGCCAAGAGTTCTTTCTTTAACTGGTTAATGTTTG 556
||||||||||| | |||||||||| || ||||||||| ||||| |||||||| |||||||
Sbjct 509 TGGAAATGATCAT-AAAGAGGCAAGAGACAAGAGTTCATTCTTCAACTGGTTGATGTTTG 567
Query 557 GAAGTTGTGTTAGCATATTGACCACTCGATTGGTCTCTAGCTACATTCAAGA-ATACCTA 615
||| ||| ||||||||||||| ||||| |||||||||| |||||||||||| | |||||
Sbjct 568 GAAACTGTATTAGCATATTGACGACTCGTTTGGTCTCTACCTACATTCAAGAGA-ACCTA 626
Query 616 AGTTGGTC-CTTAGGATTTGGTATTCCAAGTGTTTCCATGCTACTTGCTCTGCTTCTCTT 674
|| ||||| || ||| ||||||||||| |||||||||||| | ||| ||||| |||||||
Sbjct 627 AGCTGGTCACT-AGGGTTTGGTATTCCTAGTGTTTCCATGTTGCTTTCTCTGTTTCTCTT 685
Query 675 CCTTCTTGGCACTAAGACTTACCGCTTTAGTGCT-ACAAGAGGAGGAAAGAAAAATCCGT 733
||| ||||| |||| ||||||| |||||| || | | ||| |||||||||||| || |
Sbjct 686 CCTCCTTGGAACTACCTCTTACCGTTTTAGTACTGAGA-GAGTAGGAAAGAAAAACCCTT 744
Query 734 TTGCTAGAATCAGTCGTGTTTTCATGGTTGCTTTAAAGAATAGAACG-CAACCAGATTCA 792
|||| |||||||||||||| ||||||| ||||||||||| |||| | ||||| |||| |
Sbjct 745 TTGCCAGAATCAGTCGTGTATTCATGGAGGCTTTAAAGAACAGAA-GACAACCCGATTTA 803
Query 793 TATATAGCTAAC-C---CG--AACGAGAC-C-C-TTCTCATT--T-ACCAGAGTTCCAAG 840
|||| |||||| | || |||||||| | | ||||| | | |||||||||||||
Sbjct 804 GATATTGCTAACGCGAACGCCAACGAGACTCTCCTTCTCCTGGCTCACCAGAGTTCCAAA 863
Query 841 CAATTCAGGTTCCTCGACAAGGCAGCGATTTCGTGTAGTTTTG-CTGAAATTGAAGAAGC 899
|| ||||| ||||| |||| |||||| ||||| ||| | ||| ||||||||||||||||
Sbjct 864 CAGTTCAGATTCCTAGACAGGGCAGCTATTTCTTGT-GAATTGGCTGAAATTGAAGAAGC 922
Query 900 AAAAGCGGTGCTTAAGCTTGTTCCCATATGGCTGACTTGTTTAGTCTACGCTATTGTATG 959
||| ||||| |||| |||| ||||||||||| | |||| | |||||||| | ||||||
Sbjct 923 AAAGGCGGTTCTTAGGCTTATTCCCATATGGATAACTTCTGTAGTCTACACCATTGTACA 982
Query 960 TGCACAATCCCATACTTTCTTCACAAAGCAAGGAGCCAAAATGGACAGATCAATCTCTCC 1019
||||||||||| |||||| || |||||||||||||||| ||||||||| |||||||| ||
Sbjct 983 TGCACAATCCCCTACTTTTTTTACAAAGCAAGGAGCCACAATGGACAGGTCAATCTCACC 1042
Query 1020 AGGACTCTTAGTCCCTGCGGCTACACTCCAATGTTTCATAAGCCT-TACAATGGTCATTT 1078
|||||||||||| ||||| |||||||| ||| ||||||||| ||| | || | ||| |||
Sbjct 1043 AGGACTCTTAGTTCCTGCAGCTACACTTCAAAGTTTCATAAACCTCT-CAGTAGTCGTTT 1101
Query 1079 TTATCCCAATCTACGACCGTCTC-CTCGTCCCAATCGCAAGATCTTTCACTCATAACCCT 1137
| ||||||||||||||||| || ||||||||| ||||||| || |||||||| ||| |
Sbjct 1102 TCATCCCAATCTACGACCG-CTTACTCGTCCCATTCGCAAGGTCCTTCACTCAAAACTCA 1160
Query 1138 TCAGGAATCACAATGCTACAAAGGATTGGCACAGGGATTTTTCTCTCCATCCTTGCTATG 1197
||||| ||||||| ||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 1161 TCAGGTATCACAACGCTACAAAGGATTGGTACAGGGATTTTCCTCTCCATTCTTGCTATG 1220
Query 1198 GTAGTAGCCGCCTTGGTAGAGAGAAAAAGGCTCCAAATCGCTCATGAT-AA-TGTCACAA 1255
||| ||||||| ||||| |||| ||||||||||||| ||| | ||| || | || ||
Sbjct 1221 GTATTAGCCGCATTGGTCGAGACAAAAAGGCTCCAAGCCGCCCGGGATGAACTCTC-CA- 1278
Query 1256 TACTAATGAGCGTGTGGTGGTTGGTTCCACAGTACGTTCT-TTATGGAGTCTCGGACGTG 1314
||| ||||||||||||||| || |||||||||| ||| | || ||||||||| || ||
Sbjct 1279 TACCGATGAGCGTGTGGTGGCTGATTCCACAGTATGTTATCTT-TGGAGTCTCAGATATG 1337
Query 1315 TTCA---TGGTGGGTTTGCAAGAGTTCTTCTACGACCAAGTCCCTAGTGAGCTTAGGAGT 1371
|||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1338 TTCACAATGGTGGGTTTACAAGAGTTCTTCTACGGCCAAGTCCCTAGTGAGCTTAGGAGC 1397
Query 1372 GTTGGTATGGCTCTGAATCTAAGCATATACGGGGTCGG-AAACTTTCTAAGCAGCTTCAT 1430
|||||||||||| |||| |||||||||||||||| ||| ||||| ||||||||||| ||
Sbjct 1398 GTTGGTATGGCTTTGAACCTAAGCATATACGGGG-CGGGAAACTACCTAAGCAGCTTTAT 1456
Query 1431 GATATCAATCATTGATAAAATCACGAGCCAGTCTGGTCAAACGAGCTGGTTCGATAATGA 1490
||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 1457 GATATCAGTCATTGATAAAATCACGAACCAGTATGGTCAAAGGAGCTGGTTCGATAATGA 1516
Query 1491 CTTAAACCATGCTCATCTAGATTATTTCTACTGGCTACTCGCTTGTCTCAGCTCCATTGG 1550
||| |||| |||||||||||||| |||||||||||||| ||||||||| ||| ||||||
Sbjct 1517 CTTGGACCAAGCTCATCTAGATTACTTCTACTGGCTACTGGCTTGTCTCGGCTTCATTGG 1576
Query 1551 TTTAGTCTCCTACTTGTGGTTCGCCAAGTCGTATCTTTACA 1591
||| | || |||||| |||||||||||||| ||| | ||||
Sbjct 1577 TTTCGCCTTCTACTTATGGTTCGCCAAGTCATATGTCTACA 1617
> AT1G72131.1 | Symbols: | pseudogene of proton-dependent oligopeptide
transporter | chr1:27139395-27140536 FORWARD LENGTH=926
Length=926
Score = 1251 bits (677), Expect = 0.0
Identities = 799/859 (93%), Gaps = 4/859 (0%)
Strand=Plus/Plus
Query 149 TTTACGGGATTTCCTCGAACTTGATAACGTATCTGACCGGACCACTGGGGGAGTCAACAG 208
|||| |||||||||| |||||||||||| ||||||||||||||| | |||||||||||||
Sbjct 47 TTTATGGGATTTCCTTGAACTTGATAACATATCTGACCGGACCATTAGGGGAGTCAACAG 106
Query 209 CTGCCGCTGCAGCCAATGTCAACGCATGGACTGGAACGGTGTCGTTTCTGCCCCTTCTCT 268
|||| ||||||||||||||||||||||||| ||| |||||||||||| |||||||||
Sbjct 107 CTGCAGCTGCAGCCAATGTCAACGCATGGAGTGG---GGTGTCGTTTCTTCCCCTTCTCG 163
Query 269 GGGGCTTTATCGCTGACTCGTTTCTTGGACGTTTCCGTACAATCGTGATCGCGTCTTCTC 328
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 164 GGGGCTTTATCGCTGACTCGTTTCTTGGACGTTTTCGTACAATCGTGATCGCGTATTCTC 223
Query 329 TCTATATCTTGGGACTTGGGTTGCTGTCTTTTTCAGCCATGGCTCCTTCTAACTCTAAAG 388
| |||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 224 TTTATATCATGGGACTTGGGTTGCTGTCTTTTTCAGCCATGACTTCTTCTAACTCTAAAG 283
Query 389 ATCCAAATCAACTCCAAGTGATTCTCTTCTTCTGCTCTCTGTATCTTATAGCAATAGGAC 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 ATCCAAATCAACTCCAAGTGATTCTCTTCTTCTGCTCTCTGTATCTTATAGCAATAGGAC 343
Query 449 AAGGCGGTTACAAACCGTGTATTAAGGTATTTGGAGCAGATCAATTCGATGGAAATGATC 508
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 344 AAGGCGGTTACAAACCATGTATTAAGGTATTTGGAGCAGATCAATTTGATGGAAATGATA 403
Query 509 TCAAAGAGGCAAAAGCCAAGAGTTCTTTCTTTAACTGGTTAATGTTTGGAAGTTGTGTTA 568
| ||||| ||||||| ||||||||||| |||||| ||||| |||||||||||||||||||
Sbjct 404 TAAAAGATGCAAAAGACAAGAGTTCTTACTTTAATTGGTTGATGTTTGGAAGTTGTGTTA 463
Query 569 GCATATTGACCACTCGATTGGTCTCTAGCTACATTCAAGAATACCTAAGTTGGTCCTTAG 628
||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 464 GCATATTGACCTTTCGTTTGGTCTCTAGCTACATACAAGAGGACCTAAGTTGGTCCTTAG 523
Query 629 GATTTGGTATTCCAAGTGTTTCCATGCTACTTGCTCTGCTTCTCTTCCTTCTTGGCACTA 688
||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||
Sbjct 524 GATTTGGTATTCCAAGTGTTTTCATGCTACTTGCTCTGTTTCTCTTCCTTCTCGGCACTA 583
Query 689 AGACTTACCGCTTTAGTGCTACAAGAGGAGGAAAGAAAAATCCGTTTGCTAGAATCAGTC 748
|||||||||| ||||| || |||||| ||| ||||||||||| ||||||||||||||||
Sbjct 584 AGACTTACCGTTTTAGCACTGCAAGAGAAGGGAAGAAAAATCCTTTTGCTAGAATCAGTC 643
Query 749 GTGTTTTCATGGTTGCTTTAAAGAATAGAACGCAACCAGATTCATATATAGCTAACCCGA 808
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 644 ATGTTTTCATGGCGGCTTTAAAGAATAGAACACAACCAGATTCATATATAGCTAACCCCA 703
Query 809 ACGAGACCCTTCTCATTTACCAGAGTTCCAAGCAATTCAGGTTCCTCGACAAGGCAGCGA 868
||||||||||||||| | | |||||||||||||| ||||| |||||| ||||||||||||
Sbjct 704 ACGAGACCCTTCTCACTCATCAGAGTTCCAAGCAGTTCAGATTCCTCAACAAGGCAGCGA 763
Query 869 TTTCGTGTAGTTTTGCTGAAATTGAAGAAGCAAAAGCGGTGCTTAAGCTTGTTCCCATAT 928
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 764 TTTCTTGTAGTTTTGCTGAAATTGAAGAAGCAAAAGCGGTGCTTAAGCTTGT-CCCATGT 822
Query 929 GGCTGACTTGTTTAGTCTACGCTATTGTATGTGCACAATCCCATACTTTCTTCACAAAGC 988
|||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 823 GGCTGACTTGCTTAGTCTATGCTATTGTATGTGCACAATCTCATACTTTCTTCACAAAGC 882
Query 989 AAGGAGCCAAAATGGACAG 1007
|||||||||||||||||||
Sbjct 883 AAGGAGCCAAAATGGACAG 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5