BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg339443

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G72210.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bin...   765    0.0  


> AT1G72210.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding 
superfamily protein | chr1:27179790-27182430 FORWARD 
LENGTH=1401
Length=1401

 Score =  765 bits (414),  Expect = 0.0
 Identities = 471/499 (94%), Gaps = 1/499 (0%)
 Strand=Plus/Plus

Query  63    AAA-GGGAGATCAAGCGTCGATAGTAGGCGGAGCCATTAATTACTTAAAGGAGCTTGAGC  121
             ||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct  740   AAAGGGGAGATCAAGCATCGATAGTAGGCGGAGCCATTAACTACTTAAAGGAGCTTGAGC  799

Query  122   ATCATTTACAATCAATGGAGCCTCCGGTCAAGACCACCGTAGAAGACGCCGGAGCGGGCT  181
             ||||||||||||||||||| |||||||| |||||| ||  ||||||| ||||||| ||| 
Sbjct  800   ATCATTTACAATCAATGGAACCTCCGGTTAAGACCGCCACAGAAGACACCGGAGCCGGCC  859

Query  182   TCGACCAGATCAACACAACCGCAGCTAGCTCATCGGGACCATTCTCGGATTTCTTTGCAT  241
              |||||||| ||| |||||| | ||||| || ||||||||||||||||||||||||||||
Sbjct  860   ACGACCAGACCAAAACAACCTCGGCTAGTTCGTCGGGACCATTCTCGGATTTCTTTGCAT  919

Query  242   TTCCTCAGTACTCGAACCGGCCTACGTCTGCGGCGGCGGCTGAGGGGATGGCGGAGATAG  301
             ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  920   TTCCTCAGTACTCGAACCGGCCTACCTCTGCGGCGGCGGCTGAGGGGATGGCGGAGATAG  979

Query  302   AGGTGACGATGGTGGAGAGCCATGCGAGTCTGAAGATACTTGCTAAAAAGCGACCGAGAC  361
             |||| |||||||| |||||||||||||||||||| |||||||| |||||| |||||||||
Sbjct  980   AGGTAACGATGGTAGAGAGCCATGCGAGTCTGAAAATACTTGCGAAAAAGAGACCGAGAC  1039

Query  362   AGCTTCTTAAACTGGTCTCATCGATACAGAGCCTAAGGCTCACTCTTCTCCATCTCAACG  421
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  1040  AGCTTCTTAAACTGGTCTCATCGATACAGAGCCTAAGGCTCACTCTTCTCCATCTAAACG  1099

Query  422   TCACCACTCGAGACGACTCCGTCCTCTATTCCATCAGCGTCAAGGTTGAAGAAGGGAGCC  481
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1100  TCACAACTCGAGACGACTCCGTCCTCTATTCCATCAGCGTCAAGGTTGAAGAAGGGAGCC  1159

Query  482   AATTGAATACAGTGGAAGATATTGCAGCAGCTGTGAATCAAATCCTAAGGAGGATCGAAG  541
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1160  AATTGAATACAGTAGAAGATATTGCAGCAGCTGTGAATCAAATCCTAAGGAGGATCGAAG  1219

Query  542   AAGAATCATCCTTTAGCTA  560
             |||| ||||||||||||||
Sbjct  1220  AAGAGTCATCCTTTAGCTA  1238



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26925502792


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5