BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339448
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72270.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ribosome ... 1770 0.0
> AT1G72270.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ribosome
60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G27010.1);
Has 772 Blast hits to 657 proteins in 120 species:
Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants
- 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
| chr1:27199733-27211161 REVERSE LENGTH=8577
Length=8577
Score = 1770 bits (958), Expect = 0.0
Identities = 1141/1227 (93%), Gaps = 21/1227 (2%)
Strand=Plus/Plus
Query 1 ATGGTCGCCGGAAAACGAAAATCCGACAGAAGCCCAACAAATGTATCCGAAAAACTTGGT 60
||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 40 ATGGTAGCCGGAAAACGAAAATCCGACAGAAACCCAACAAATGTATCCGACAAACTTGGT 99
Query 61 CTTAAAGACCCATTACTGCGCCGTCTCTCTTCCGCCGCCGCCGTCACTCACTCCTTTCTC 120
|| |||||||||||||||||||||||||||||||| |||||||| || |||| ||||||
Sbjct 100 CTAAAAGACCCATTACTGCGCCGTCTCTCTTCCGCTGCCGCCGTAACAAACTCTTTTCTC 159
Query 121 CAAGCCAACGATCTCTCCCTCTCACCATCACA-ATCTCTCCGCCTTGAATCCCTAATCTC 179
|||||||||||||||| ||||||||||||||| | | |||||||||||||||||||||||
Sbjct 160 CAAGCCAACGATCTCTTCCTCTCACCATCACAGA-CCCTCCGCCTTGAATCCCTAATCTC 218
Query 180 ATCTCTCCCAATCCCACCTTCCCCTTC-T-C-CCTCCTCCGCCGTCACCACCGCCACGTG 236
||||||||||||| ||||||||||||| | | ||||||||||| |||||||| |||||||
Sbjct 219 ATCTCTCCCAATCTCACCTTCCCCTTCTTCCTCCTCCTCCGCCATCACCACCACCACGTG 278
Query 237 GTTCAACCGCTTCTTAACCTCCGCCACAGAAGACGACGATGATCCTCGCTGGTGTCTTTG 296
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 279 GTTCAACCGCTTCTTAACCTCCGCCACAGAAGACGAAGATGATCCTCGCTGGTGTCTTTA 338
Query 297 TTTCCGAATGTCGAAATCCACCTTCTTCAATCTCTTCTCTATCCTCTCCCCTTCCTCGCT 356
|||||||||||| |||||||||||||||| ||||| |||||||||||||| ||| |||||
Sbjct 339 TTTCCGAATGTCAAAATCCACCTTCTTCAGTCTCTACTCTATCCTCTCCCATTCTTCGCT 398
Query 357 TCCTTCCTTCGCTGCCGCAATCTTCCGTCTCGCTCACGGTGCTTCTTACGAGTGTCTTGT 416
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 399 TCCTTCCTTCGCTGCCACAATCTTCCGTCTCGCTCACGGTGCTTCTTACGAGTGTCTCGT 458
Query 417 TCACAGATTCGGGTTTGATTCCACCTCCCAAGCTTCACGCTCTTTCTTCACTGTCTGCAA 476
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 459 TCACAGATTCGGGTTTGATTCCACTTCCCAAGCTTCACGCTCTTTCTTCACTGTCTGCAA 518
Query 477 ACTCATCAATGAGAAATTAAGTCAACAACTTGATGCTCC-AAACCCCGATTTTTCGCCTA 535
||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||
Sbjct 519 ACTCATCAATGAGAAATTAAGTCAACAACTTGATGATCCTAAACCC-GATTTTTCACCTA 577
Query 536 ATCTGCTCCCGAATTGCTGCGGTGTTGTCGGATTCGGGAGGTTTGAGGTTAAAGGAAAGC 595
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 578 ATCTGCTTCCGAATTGCTACGGTGTTGTCGGATTCGGGAGGTTTGAGGTTAAAGGAAAGC 637
Query 596 TTCTTGGTGCAAAAGGGTCAATTTTGGTTCAAGCATTGGTTGATTCCGATGGCAGATTTG 655
|||||||||| ||||| || || |||||||||||||||||||||||| |||||||||| |
Sbjct 638 TTCTTGGTGCTAAAGGTTCGATCTTGGTTCAAGCATTGGTTGATTCCAATGGCAGATTCG 697
Query 656 TTGATATCTCAGCGGGTTGGCCAAGTACGATGAAACCAGAAGCTATTTTCAGACAGACGA 715
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 698 TTGATATCTCAGCTGGTTGGCCAAGTACTATGAAACCAGAAGCTATTTTTAGACAGACGA 757
Query 716 AGCTTTTCTCAATTGCAGAGGAAGTTCTCAATGAAGCTCCGACCAAACTTGGGAATGGAG 775
||||||| |||||||||||||||||||||| || ||||||||| |||||||| |||||||
Sbjct 758 AGCTTTTTTCAATTGCAGAGGAAGTTCTCAGTGGAGCTCCGACTAAACTTGGAAATGGAG 817
Query 776 TATTGGTTCCTCGTTACATTTTGGGAGATTCTTGTCTTCCTTTATTGCCATGGCTTGTGA 835
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 818 TATTGGTTCCTCGTTACATATTGGGAGATTCTTGTCTTCCTTTATTGCCGTGGCTTGTTA 877
Query 836 CACCTTATGATTTGACTTCAAACGAAGAGGAAGAGGAGACTTTTAGAGAAGAATTCAACA 895
|||||||||||||||||||| |||| | | | ||| ||||||||||||||||||||
Sbjct 878 CACCTTATGATTTGACTTCAGACGA-G-G-A-GAG-----TTTTAGAGAAGAATTCAACA 928
Query 896 ATGTGGTTCACACTGGATTGCTTAGTGTTGAGATTGCGTTTGCTAAGGTTCGAGCTCGGT 955
|||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 929 ATGTAGTACACACTGGATTGCATAGTGTTGAGATTGCGTTTGCTAAGGTTCGAGCTCGGT 988
Query 956 GGCGGATTCTTGATAAGAAATGGAAACCAGAGACAATCGAGTTTATGCCGTTTGTTC-TA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 989 GGCGGATTCTTGATAAGAAATGGAAACCAGAGACAATCGAGTTTATGCCGTTTGT-CATA 1047
Query 1015 ACTACGGGTTGCTTGTTGCATAATTTTCTTGTGGATTCTGGAGATGATGATGATTCACTG 1074
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||
Sbjct 1048 ACTACGGGTTGCTTGTTGCATAATTTTCTTGTGAATTCTGGTGATGATGATGATTCAGTG 1107
Query 1075 GAGGAATGGGTGAATGGTTGTGCTGCTGGTTATAATGGTGAGACGAGGAAAGATGATGAT 1134
|||||||| ||||||||||||| |||||| |||||||||||| ||| ||||||||||||
Sbjct 1108 GAGGAATGTGTGAATGGTTGTGAAGCTGGTGATAATGGTGAGATGAGAAAAGATGATGAT 1167
Query 1135 GATGAG-A--AGACTCGGAGGTTCGAAGGAGAAGCATATATAGAGTCGAGGAGGATCAGA 1191
| ||| | |||||||||| ||||||||||||||||||| |||||||| ||||||||||
Sbjct 1168 AAGGAGGAGGAGACTCGGAGTTTCGAAGGAGAAGCATATAGAGAGTCGAAGAGGATCAGA 1227
Query 1192 GATGCTATCGCGGAGAACCTTAGCCGA 1218
||||||||||| |||||||| ||||||
Sbjct 1228 GATGCTATCGCTGAGAACCTAAGCCGA 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60441456180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5