BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg339481

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G72630.1 | Symbols: ELF4-L2 | ELF4-like 2 | chr1:27344270-27...   553    6e-157


> AT1G72630.1 | Symbols: ELF4-L2 | ELF4-like 2 | chr1:27344270-27345576 
FORWARD LENGTH=896
Length=896

 Score =  553 bits (299),  Expect = 6e-157
 Identities = 329/344 (96%), Gaps = 0/344 (0%)
 Strand=Plus/Plus

Query  1    ATGGAAGGAGATGTGTATTCTGGATTTGGAGAGAGATACCAAATGGATGGTAAATTGTTG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  320  ATGGAAGGAGATGTGTATTCTGGATTTGGAGAGAGATACCAAATGGATGGTAAGTTGTTG  379

Query  61   CAGAATTTCCAGAAGAGCTTTGTTCAAGTTCAAGACATTCTTGATCAAAACCGGCTTTTG  120
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  380  CAGAATTTCCAGAAGAGCTTTGTTCAAGTTCAAGACATTCTTGATCAGAACCGGCTTTTG  439

Query  121  ATCAACGAGATCAATCAGAACCACGAGTCCAAACAAGCTGATAACTTGGGAAGAAATGTG  180
            ||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| 
Sbjct  440  ATCAACGAGATCAATCAGAACCATGAGTCGAAACAAGCTGATCACTTGGGAAGAAATGTT  499

Query  181  GGTTTGATAAGAGAGCTCAATAACAATATCAGAACAGTGGCAAGTCTTTATGGAGATCTC  240
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  500  GGTTTGATAAGAGAGCTCAATAACAATATCAGAACTGTTGCAAGTCTTTATGGAGATCTC  559

Query  241  TCTCATTCTTTCGCTAGATCGATCGATGCTTCATCTGAAGGGGAATCTACCGGGACATTG  300
            ||||||||||| ||||||||| | ||||||||||| ||||| ||||||||||||||||||
Sbjct  560  TCTCATTCTTTTGCTAGATCGGTTGATGCTTCATCGGAAGGCGAATCTACCGGGACATTG  619

Query  301  AAATCTGATGGCAAGGCCAACAACCAGAAGAGATTTAGATCCGG  344
            |||||||| || ||||||||||||||||||||||||||||||||
Sbjct  620  AAATCTGACGGTAAGGCCAACAACCAGAAGAGATTTAGATCCGG  663



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20207635098


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5