BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339498
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72830.2 | Symbols: HAP2C, ATHAP2C, NF-YA3 | nuclear factor ... 1485 0.0
> AT1G72830.2 | Symbols: HAP2C, ATHAP2C, NF-YA3 | nuclear factor
Y, subunit A3 | chr1:27405461-27407969 REVERSE LENGTH=1689
Length=1689
Score = 1485 bits (804), Expect = 0.0
Identities = 949/1017 (93%), Gaps = 17/1017 (2%)
Strand=Plus/Plus
Query 2 TGAATAAGAAAGATTCAGCTACTCATTCCACTTTGCCATACCTTAATACTAGCATCTCTT 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 TGAATAAGAAAGATTCAGCTACTCATTCCACTTTGCCATACCTTAATACTAGCATCTCTT 501
Query 62 GGGGAGTGGTTCCAACTGATTCCATTGTTAATCGTCGCGTTACTACTACTGAATCATCAC 121
||||||||||||||||||||||| ||| ||||||||||| | | || |||||||| |
Sbjct 502 GGGGAGTGGTTCCAACTGATTCCGTTGCTAATCGTCGCGGT--T-CTGCTGAATCA-C-- 555
Query 122 TAAGCTTGAAGATGGATGCAAGGCCTGAACTTTTACAAACCACTAAGCAAATCAGTTTTC 181
||||||||||| | ||| |||| |||| | | ||||||| || ||||||||||||||||
Sbjct 556 TAAGCTTGAAGGTTGATTCAAGACCTGGGCATATACAAACTACAAAGCAAATCAGTTTTC 615
Query 182 AGGACCAGGATTCATCTTCAACGCAGTCCACTGGCCAATCTTATACTGAAGTTGCTAGTA 241
||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 616 AGGACCAAGATTCATCTTCAACACAGTCCACTGGTCAATCTTATACTGAAGTTGCTAGTA 675
Query 242 GTGAAGATGATAATCCTTCCAGACAAATCTCGTTTTCTGCTAAATCAGGATCTGAAGTAA 301
||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 676 GTGGTGATGATAATCCTTCCAGACAAATCTCCTTTTCGGCTAAATCAGGATCTGAAATAA 735
Query 302 CTCAACGGAAGGGGTTTGCAAGTAATCCTAAACCAGGCTTGATGACAGGATTTCCGAATA 361
||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||
Sbjct 736 CTCAACGGAAGGGGTTTGCAAGTAATCCTAAACAAGGCTCGATGACTGGATTTCCGAATA 795
Query 362 TTCACTTTGCTCCTGCACAGGCTAATTTCTCATTTCACTATGCTGATCCACATTATGGTG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 TTCACTTTGCTCCTGCACAGGCTAATTTCTCATTTCACTATGCTGATCCACATTATGGTG 855
Query 422 GTTTATTAGCTGCTACTTACCTACCACAGGCACCGACATGCAATCCCCAAATGATGAGTA 481
||||||||||||| |||||||||||||||||||| ||||||||||| |||||| ||||||
Sbjct 856 GTTTATTAGCTGCAACTTACCTACCACAGGCACCAACATGCAATCCTCAAATGGTGAGTA 915
Query 482 TGATTCCTGGTCGTGTTCCTTTACCAGCGGAGCTCACTGAAACTGAGCCAGTCTTTGTCA 541
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 916 TGATTCCTGGTCGTGTTCCTTTACCAGCAGAGCTCACAGAAACTGATCCAGTCTTTGTCA 975
Query 542 ATGCGAAGCAATACCACGCAATTATGAGGAGGAGACAGCAACGTGCTAAGCTCGAGGCTC 601
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 976 ATGCGAAGCAATACCACGCAATTATGAGGAGGAGACAGCAACGTGCTAAGCTTGAGGCTC 1035
Query 602 AAAACAAACTAATCAGAGCCCGTAA---ACCTTATCTTCATGAGTCGCGACATGTTCATG 658
||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||
Sbjct 1036 AAAACAAACTAATCAGAGCCCGTAAGGTACCCTATCTTCATGAGTCTCGACATGTTCATG 1095
Query 659 CTCTTAAAAGGCCAAGAGGATCCGGTGGAAGATTCCTAAACACCAAAAAACTTCTTCAAG 718
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1096 CTCTTAAAAGGCCAAGAGGATCTGGTGGAAGATTCCTAAACACCAAAAAACTTCTTCAAG 1155
Query 719 AAGCCGAACAAGCTGCT---AGAGAACAAGAAAATGACAAGTC-GGACCAACAGGAAAAC 774
|| ||||||| |||||| |||||||||||| | ||||||| || |||||||| ||||
Sbjct 1156 AATCCGAACAGGCTGCTGCTAGAGAACAAGAACAGGACAAGTTAGG-CCAACAGGTAAAC 1214
Query 775 AGAAAGACAAACATGTCTAGATTCGAAGCTCATATGCTGCA---CAGCAAAGACCGTGGT 831
|||||||| |||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 1215 AGAAAGACCAACATGTCTAGATTCGAAGCTCATATGCTGCAGAACAACAAAGACCGCAGC 1274
Query 832 TCAACCACTTCTGGCTCTGACATCACCTCTATTTCCGACGGTGCTGATATCTTTGGACAC 891
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1275 TCAACCACTTCTGGCTCAGACATCACCTCTGTTTCCGACGGTGCTGATATCTTTGGACAC 1334
Query 892 ACTGAATTCCAGTTTTCAGGTTTCCCAAATCCGACAAACCGAGCCATGCTTGTTCATGGT 951
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1335 ACTGAATTCCAGTTTTCAGGTTTCCCAACTCCGATAAACCGAGCCATGCTTGTTCATGGT 1394
Query 952 CAGTCTAATGACATGCATGGAGGTGGAGACATGCACCATTTCTCTGTCCATATCTGA 1008
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 CAGTCTAATGACATGCATGGAGGTGGAGACATGCACCATTTCTCTGTCCATATCTGA 1451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5