BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339520
Length=1863
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73130.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 706 0.0
> AT1G73130.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G17780.2);
Has 1447 Blast hits to 774 proteins in 215 species: Archae
- 0; Bacteria - 679; Metazoa - 377; Fungi - 171; Plants - 42;
Viruses - 6; Other Eukaryotes - 172 (source: NCBI BLink).
| chr1:27499035-27502055 FORWARD LENGTH=2532
Length=2532
Score = 706 bits (382), Expect = 0.0
Identities = 515/577 (89%), Gaps = 18/577 (3%)
Strand=Plus/Plus
Query 1 ATGGGACCAGAATCTAAAGGAAGAGCATGGTTTGGTAAAATCTACAACAAGTTGGAAACT 60
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
Sbjct 433 ATGGGACCAGAATCTAAAGGACGAGCATGGTTTAGTAAAATCTACAACAAGTTGGAAAAT 492
Query 61 ATACTTGTTGAGGTTGATTCTTTCACTTCTCAGACCACGCTTTGTTTGAAATCAAGTGAA 120
| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 493 TTGCTTGTTGAGGTTGACTCTTTCACTTCTCAGAGCACGCTTTGTTTGAAATCAAGTGAA 552
Query 121 CCTCCGGGATTCGAATCTGTTAGAGGTGACTCAAAGGAAGTCGCAGAGGACCGTTCTTAC 180
|||||| ||||||||| |||||||||||| ||||||||||| |||||||||| |||||
Sbjct 553 CCTCCGAGATTCGAATATGTTAGAGGTGAATCAAAGGAAGTTGCAGAGGACCATTCTT-- 610
Query 181 GGAACTTATAGTGTGCAAGGACATCATAATCGTGTTGATTCACCGAGTTTTAAAAGTCCT 240
| || | ||| ||||||| |||| ||||||||| ||||||| | | ||||||||
Sbjct 611 ----C-TA-A-TGTACAAGGACGTCATGATCGTGTTGCTTCACCGCGAAGTGAAAGTCCT 663
Query 241 TTTGATCCACCGTCACATCAGAACTTTGACATTCCAGGACATGTTCTGGTTGAGAAGCGA 300
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 664 TCTGATCCACCGTCACATCAGAACTTTGACATTCCAGGACATGTTTTGGTTGAGAAACGA 723
Query 301 GTTCAAGGCGATATTTTGAAGGAGAATGTAGTTCAAAGAGATAGTTTTGAGGAGAATTCA 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 724 GTTCAAGGCGATATTTTGAAAGAGAATGTAGTTCAAAGAGATAGTTTTGAGGATAATTCA 783
Query 361 TCAGCAGCCTCCTT-GTCTAACGGAGAAACAGACTCTACATCTCCACTGC-TCGAAGAGT 418
||||| |||| || |||| | ||||||| ||| |||||||||||||||| | |||||||
Sbjct 784 TCAGCTTCCTC-TTCGTCTGATGGAGAAATAGAATCTACATCTCCACTGCAT-GAAGAGT 841
Query 419 ACTGTGATGCTAATATGACATCAATCACTAGTCTTGGTGCTGAAGAACAATTTA-TTTCT 477
||||||||||| |||||||||||| ||||| |||| ||| |||||||||||| | |||||
Sbjct 842 ACTGTGATGCTTATATGACATCAACCACTACTCTTAGTGATGAAGAACAATT-AGTTTCT 900
Query 478 GATGAAGAAGAGTCTCAGATCTTACCTGATGAAGAAATACTCTCTACATCTCCATTGCTT 537
|||||||| | |||||||| || ||||||| ||||| |||||||||||| |||||||||
Sbjct 901 GATGAAGA-G--TCTCAGATATTTCCTGATGGAGAAAGACTCTCTACATCCCCATTGCTT 957
Query 538 GAAGAGTATCATGATGCTAATCTGACATCACCCACTA 574
|||||||||||||||||||||||||||||| || |||
Sbjct 958 GAAGAGTATCATGATGCTAATCTGACATCAGCCGCTA 994
Score = 497 bits (269), Expect = 1e-139
Identities = 400/458 (87%), Gaps = 29/458 (6%)
Strand=Plus/Plus
Query 1413 AAACATGAGATCCTCTAATGCAGATAACCCAGATGATGTGA-T--TAATGGCAAATCTGA 1469
||||||||||||||||||||| ||||| ||||||||||||| | |||| ||||||||||
Sbjct 1938 AAACATGAGATCCTCTAATGCGGATAATCCAGATGATGTGATTAATAATTGCAAATCTGA 1997
Query 1470 TGTTACTCCATTAGATACCAATGCATTGTATGGCATAGAATTTCAAAAAGACCCCTCGTA 1529
||||||||||| |||||||| | | | ||| | |||||||||||| ||||||||
Sbjct 1998 CGTTACTCCATTGGATACCAA-G----G-A---CATTGCATTTCAAAAAGAACCCTCGTA 2048
Query 1530 TGTTGATGACAGTGTGCTTTATGCAGTGCGTGCTAGGATCATTGCTGAGCTGTGCGGCAT 1589
|| | | | | || | | ||||||||| ||||||||| ||||| |||||||||||
Sbjct 2049 TG-T--T-A-A-TG-AC---A--CAGTGCGTGTTAGGATCATGGCTGAACTGTGCGGCAT 2096
Query 1590 GGAATCTCGAGAAGACCCCT---ATGTTGAGGACAGTGTGCTTTATGCCATTCATCTTAG 1646
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 2097 GGAATCTCGAGAAGACCCCTTGTATGTTGAGGACAGTGAGCTTTATGCCATTCATCTTAG 2156
Query 1647 GACCGAGAAACTCAGATCCTTCAAGAGAAAAATCTTGGATGCTTTAACTTCAAAGAGAAG 1706
|||| ||||||||||||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 2157 GACCAAGAAACTCAGATCCTTCAAGAGAAAGGTCTTGGACGTTTTAACTTCAAAGAGAAG 2216
Query 1707 AAGAGAGAAAGAGTATGAGCAGCTTCCAATTTGGTTCGGAGATGCGG-ATATGGGTTCTG 1765
||||||||| || |||||||||||||| ||||||| ||||||||||| | ||||||||||
Sbjct 2217 AAGAGAGAAGGAATATGAGCAGCTTCCGATTTGGTACGGAGATGCGGGA-ATGGGTTCTG 2275
Query 1766 ATCTGGCCACTAAGGAAGACTCTAAACAAGTGGAAGCCATAGACTCCAAAAGCTCACAGC 1825
||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||
Sbjct 2276 ATCTGGCCACTAAGGAAGAGTCTCAACAAGTGGAAGCCACAGACTCCAAAAGCTCACTTT 2335
Query 1826 TACTTGAATCAGACGATTCCCAGTGGGAGCTATTGTGA 1863
||||||||||||| ||||||||||||||||||||||||
Sbjct 2336 TACTTGAATCAGAAGATTCCCAGTGGGAGCTATTGTGA 2373
Score = 344 bits (186), Expect = 2e-93
Identities = 232/254 (91%), Gaps = 4/254 (2%)
Strand=Plus/Plus
Query 1073 CTGATGGAGAAATATTCTCTACA-TCTTCATTGTTTGAAGAGTACTGTGATG-TGAATTT 1130
|||| | ||||||| |||||| | ||| ||||| | |||||| | ||||||| | ||| |
Sbjct 1568 CTGAAGAAGAAATACTCTCTA-AGTCTCCATTGCTCGAAGAGCATTGTGATGCT-AATCT 1625
Query 1131 GACACCAGCCACTACTCTTGGTGATGAAGAACCAATAATTACCGATGATGAGTCTTGGAT 1190
|||| ||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1626 GACATCAGACACTACTCTTGGTGATGAAAAACCAATAATTACGGATGATGAGTCTTGGAT 1685
Query 1191 CACTAACAGTTTAACCTCTCAGAAATCTTCTGCTGGAAACTCTTGGGTTGTTTCAGGCGA 1250
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1686 CAGTAACAGTTTAACCTCTCAGAAATCTTCTGCTGGAAACTCTTGGGTTTTTTCAGGCGA 1745
Query 1251 GGAAAATGTAGAAGAAGTTAAAGTTAAATCGTGCAGAGATGTTGTTTCCACAGAACCTCA 1310
||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1746 GGATAGTGTAGAAGAAGTTAAAGTTAAATCGTGCAGAGATGTTGTTTCCACAGAATCTCA 1805
Query 1311 ATCTACTCAAAGTT 1324
||||||||||||||
Sbjct 1806 ATCTACTCAAAGTT 1819
Score = 195 bits (105), Expect = 2e-48
Identities = 177/211 (84%), Gaps = 8/211 (4%)
Strand=Plus/Plus
Query 858 TGATGAAGAAATACTCTCCACA-T-TGCGGTTGCTTGAAGAG-AGTTATGATGCTAATCT 914
||| |||||||||||||| | | | | | ||||| |||||| | || ||||||||||||
Sbjct 1569 TGAAGAAGAAATACTCTCTA-AGTCT-CCATTGCTCGAAGAGCA-TTGTGATGCTAATCT 1625
Query 915 GACATCAGACACTACTCTTGGTGATGAAGAACCAATAATTAACG-ATGCTGAGTCTCAGA 973
|||||||||||||||||||||||||||| |||||||||||| || ||| ||||||| ||
Sbjct 1626 GACATCAGACACTACTCTTGGTGATGAAAAACCAATAATTA-CGGATGATGAGTCTTGGA 1684
Query 974 TCACTAACACTTTAACCACTCAGAAGTTTTCTGCTGGAAGCTCTTCTGTTTTTCCAGACG 1033
||| ||||| ||||||| ||||||| | ||||||||||| ||||| |||||| ||| ||
Sbjct 1685 TCAGTAACAGTTTAACCTCTCAGAAATCTTCTGCTGGAAACTCTTGGGTTTTTTCAGGCG 1744
Query 1034 GGGAAAGTGTACAAGACGTTAGAGTTGAATC 1064
||| |||||| |||| |||| |||| ||||
Sbjct 1745 AGGATAGTGTAGAAGAAGTTAAAGTTAAATC 1775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92218401165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5