BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg339529

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G73230.1 | Symbols:  | Nascent polypeptide-associated comple...   876    0.0  


> AT1G73230.1 | Symbols:  | Nascent polypeptide-associated complex 
NAC | chr1:27540228-27541944 REVERSE LENGTH=901
Length=901

 Score =  876 bits (474),  Expect = 0.0
 Identities = 490/498 (98%), Gaps = 0/498 (0%)
 Strand=Plus/Plus

Query  1    ATGAATAGGGAAAAGTTGATGAAGATGGCTAACACTGTCCGCACTGGCGGAAAGGGGACA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  126  ATGAATAGGGAAAAGTTGATGAAGATGGCTAACACTGTCCGCACTGGCGGAAAGGGGACA  185

Query  61   GTAAGAAGAAAGAAGAAGGCTGTTCACAAGACCACTACAACCGATGACAAGAGGCTCCAG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  186  GTAAGAAGAAAGAAGAAGGCTGTTCACAAGACCACTACAACCGATGACAAGAGGCTCCAG  245

Query  121  AGCACTCTTAAAAGAGTTGGAGTCAATTCCATTCCCGCCATTGAAGAAGTTAACATTTTT  180
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  246  AGCACTCTTAAGAGAGTTGGAGTCAATTCCATTCCCGCCATTGAAGAAGTTAACATTTTT  305

Query  181  AAGGATGATGTAGTGATTCAGTTCATTAACCCTAAAGTTCAAGCTTCTATTGCTGCTAAC  240
            |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  306  AAGGATGATGTAGTCATTCAGTTCATTAACCCTAAAGTTCAAGCTTCAATTGCTGCTAAC  365

Query  241  ACATGGGTTGTGAGTGGTACACCACAGACGAAAAAGTTGCAAGACATTCTTCCTCAGATT  300
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  366  ACATGGGTTGTGAGTGGTACACCACAGACGAAAAAATTGCAAGACATTCTTCCTCAGATT  425

Query  301  ATTAGCCAACTTGGACCAGATAACTTGGACAACCTGAAGAAGCTAGCAGAGCAATTCCAG  360
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  426  ATCAGCCAACTTGGACCAGATAACTTGGACAACCTGAAGAAGCTAGCAGAGCAATTCCAG  485

Query  361  AAACAAGCTCCAGGTGCAGGTGATGTCCCAGCAACTATCCAAGAAGAGGACGATGATGAT  420
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  486  AAACAAGCTCCAGGTGCAGGTGATGTCCCAGCAACAATCCAAGAAGAGGACGATGATGAT  545

Query  421  GATGTCCCAGATCTTGTAGTTGGAGAGACTTTCGAGACTCCTGCTACTGAAGAGGCTCCC  480
            |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  546  GATGTCCCAGATCTTGTAGTGGGAGAGACTTTCGAGACCCCTGCTACTGAAGAGGCTCCC  605

Query  481  AAAGCTGCTGCTTCTTAG  498
            ||||||||||||||||||
Sbjct  606  AAAGCTGCTGCTTCTTAG  623



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23760751531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5