BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg339541 Length=1017 Score E Sequences producing significant alignments: (Bits) Value AT3G06110.2 | Symbols: MKP2, DSPTP1B | MAPK phosphatase 2 | chr... 244 1e-63 AT3G55340.1 | Symbols: PHIP1 | phragmoplastin interacting prote... 233 2e-60 > AT3G06110.2 | Symbols: MKP2, DSPTP1B | MAPK phosphatase 2 | chr3:1843479-1844776 FORWARD LENGTH=741 Length=741 Score = 244 bits (132), Expect = 1e-63 Identities = 216/251 (86%), Gaps = 28/251 (11%) Strand=Plus/Plus Query 744 GTGTTTTAGCTTCATCGACCAAGCTATTCAATCTGGTGGTGGTGTTTTGGTTCATTGCTT 803 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 308 GTGTTATAGCTTCATCGACCAAGCTATTCAATCTGGTGGTGGTGTTTTGGTTCATTGCTT 367 Query 804 CATGGGAATGTCTAGGAGCTTGTTGATTCTGGTATCATTGGGGACTGTGGTAAGAGTGGT 863 |||||||||||||||||| | || || || || | | || | | | | Sbjct 368 CATGGGAATGTCTAGGAG-T-GT-GA--CT---AT-A--G-----TG-G-T--G-G---- 402 Query 864 GGCTTATCTGATGAAAAAGCATGGAATGGGATTCTCTAAAGCTATGGAACTCATAAGGAG 923 |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 403 --CTTACCTGATGAAAAAGCATGGAATGGGATTCTCTAAAGCTATGGAACTTGTAAGGAG 460 Query 924 CCGACGACATCAGGCATATCCTAATTCCGGTTTCATTT-GCAGCTCCAACAATTTGAAAA 982 ||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| Sbjct 461 CCGACGACATCAGGCATATCCTAATCCCGGTTTCATTTCGCAGCTCCAGCAATTTGAAAA 520 Query 983 ATCCATCTAAG 993 ||||||| ||| Sbjct 521 ATCCATCCAAG 531 > AT3G55340.1 | Symbols: PHIP1 | phragmoplastin interacting protein 1 | chr3:20515647-20518059 FORWARD LENGTH=2046 Length=2046 Score = 233 bits (126), Expect = 2e-60 Identities = 157/171 (92%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 555 AGAAGAAGATGGGGTTGTTCCTAAAAAGTTATATGTTAGGGGTATTCCTTATCAGAGTAC 614 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 484 AGAAGAAGATGGGGTTGTTCCTAACAAGTTATATGTTGGGGGTATTCCTTATCAGAGTAC 543 Query 615 AGAAGATGAGATTCGTAGCTACTTCAGAAGCTGTGGAGTCATCACTAAATTTGACTGCAA 674 |||||||||||||||||||||||| ||||||||||||||||||| |||| |||| ||||| Sbjct 544 AGAAGATGAGATTCGTAGCTACTTTAGAAGCTGTGGAGTCATCATTAAAGTTGATTGCAA 603 Query 675 GATGCGTCCTGAGGATGGTGCTTTCAGTG------CCTTCATCACTTTTGA 719 |||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct 604 GATGCGTCCTGAAGATGGGGCTTTCAGTGGTATTGCCTTCATCACTTTTGA 654 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49832273824 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5