BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339541
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06110.2 | Symbols: MKP2, DSPTP1B | MAPK phosphatase 2 | chr... 244 1e-63
AT3G55340.1 | Symbols: PHIP1 | phragmoplastin interacting prote... 233 2e-60
> AT3G06110.2 | Symbols: MKP2, DSPTP1B | MAPK phosphatase 2 | chr3:1843479-1844776
FORWARD LENGTH=741
Length=741
Score = 244 bits (132), Expect = 1e-63
Identities = 216/251 (86%), Gaps = 28/251 (11%)
Strand=Plus/Plus
Query 744 GTGTTTTAGCTTCATCGACCAAGCTATTCAATCTGGTGGTGGTGTTTTGGTTCATTGCTT 803
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GTGTTATAGCTTCATCGACCAAGCTATTCAATCTGGTGGTGGTGTTTTGGTTCATTGCTT 367
Query 804 CATGGGAATGTCTAGGAGCTTGTTGATTCTGGTATCATTGGGGACTGTGGTAAGAGTGGT 863
|||||||||||||||||| | || || || || | | || | | | |
Sbjct 368 CATGGGAATGTCTAGGAG-T-GT-GA--CT---AT-A--G-----TG-G-T--G-G---- 402
Query 864 GGCTTATCTGATGAAAAAGCATGGAATGGGATTCTCTAAAGCTATGGAACTCATAAGGAG 923
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 403 --CTTACCTGATGAAAAAGCATGGAATGGGATTCTCTAAAGCTATGGAACTTGTAAGGAG 460
Query 924 CCGACGACATCAGGCATATCCTAATTCCGGTTTCATTT-GCAGCTCCAACAATTTGAAAA 982
||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 461 CCGACGACATCAGGCATATCCTAATCCCGGTTTCATTTCGCAGCTCCAGCAATTTGAAAA 520
Query 983 ATCCATCTAAG 993
||||||| |||
Sbjct 521 ATCCATCCAAG 531
> AT3G55340.1 | Symbols: PHIP1 | phragmoplastin interacting protein
1 | chr3:20515647-20518059 FORWARD LENGTH=2046
Length=2046
Score = 233 bits (126), Expect = 2e-60
Identities = 157/171 (92%), Gaps = 6/171 (4%)
Strand=Plus/Plus
Query 555 AGAAGAAGATGGGGTTGTTCCTAAAAAGTTATATGTTAGGGGTATTCCTTATCAGAGTAC 614
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 484 AGAAGAAGATGGGGTTGTTCCTAACAAGTTATATGTTGGGGGTATTCCTTATCAGAGTAC 543
Query 615 AGAAGATGAGATTCGTAGCTACTTCAGAAGCTGTGGAGTCATCACTAAATTTGACTGCAA 674
|||||||||||||||||||||||| ||||||||||||||||||| |||| |||| |||||
Sbjct 544 AGAAGATGAGATTCGTAGCTACTTTAGAAGCTGTGGAGTCATCATTAAAGTTGATTGCAA 603
Query 675 GATGCGTCCTGAGGATGGTGCTTTCAGTG------CCTTCATCACTTTTGA 719
|||||||||||| ||||| |||||||||| ||||||||||||||||
Sbjct 604 GATGCGTCCTGAAGATGGGGCTTTCAGTGGTATTGCCTTCATCACTTTTGA 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5