BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339543
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73400.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2207 0.0
> AT1G73400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:27598106-27599812 FORWARD LENGTH=1707
Length=1707
Score = 2207 bits (1195), Expect = 0.0
Identities = 1334/1402 (95%), Gaps = 6/1402 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAATTTGAATGCGTATGATGATATGGAGAAAGCCCTTGATGATTCT-GTTGTCGA 59
|||||||||||||||||||||||||||||||| |||||||||||||| ||| | ||| ||
Sbjct 307 ATGGCGAATTTGAATGCGTATGATGATATGGAAAAAGCCCTTGATGAATCTAG-TGTAGA 365
Query 60 TTTGACAACTCCTGTGGTATGCAAGATCTTACAAAGGCTTCAATACGAGGAAAAGACGGC 119
||| |||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 366 TTTAACAACTCCTGTGGTGTGTAAGATCTTACAAAGGCTTCAATACGAAGAAAAGACGGC 425
Query 120 TTTTCGGTTCTTTACTTGGGCTGGACATCAAGAACATTACTCACATGAGCCTATTGCTTA 179
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TTTTCGGTTCTTCACTTGGGCTGGACATCAAGAACATTACTCACATGAGCCTATTGCTTA 485
Query 180 CAATGAGATGATTGATATATTGTCAAGTACGAAGTATAAGAATAAGCAGTTTAGGATTGT 239
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 486 TAATGAGATGATTGATATATTGTCAAGTACTAAGTATAAGAATAAGCAGTTTAGGATTGT 545
Query 240 GATTGATATGCTTGATTACATGAAGAGAAACAAGAAAACCGTTGTTCCTGCGGATATTCT 299
||||||||||||||||||||||||||||||||| ||||||||||||| || ||| ||||
Sbjct 546 GATTGATATGCTTGATTACATGAAGAGAAACAACAAAACCGTTGTTCTTGTTGATGTTCT 605
Query 300 GTTGGAGATTCTGAGGAAGTATTGTGAGAGGTACTTGACTCATGTTCAGAAATTTGCCAA 359
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 ATTGGAGATTCTCAGGAAGTATTGTGAGAGGTACTTGACTCATGTTCAGAAATTTGCCAA 665
Query 360 GAGGAAACGGATTAGAGTGAAGACGCAGCCGGAGATTAATGCTTTCAATATGCTTCTTGA 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 666 GAGGAAACGGATTAGAGTGAAGACGCAGCCTGAGATTAATGCTTTCAATATGCTTCTTGA 725
Query 420 TGCTCTGTGTAAGTGTGGTTTGGTAAAGGAGGGTGAAGCTTTGCTTAGAAGGATGAGGCA 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 726 TGCTCTGTGTAAGTGTGGTTTGGTTAAGGAGGGTGAAGCTTTGCTTAGAAGGATGAGGCA 785
Query 480 TAGAGTTAAACCTGATGC-AACTACGTTCAATGTCTTGTTCTTTGGGTGGTGTAGAGTGA 538
|||||||||||||||||| || |||||| |||||||||||||||||||||||||| ||||
Sbjct 786 TAGAGTTAAACCTGATGCGAA-TACGTTTAATGTCTTGTTCTTTGGGTGGTGTAGGGTGA 844
Query 539 GAGACCCTAAAAAGGCAATGAAGCTGCTTGAAGAGATGATCCAAGCTGGTCATAAACCGG 598
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 845 GAGACCCTAAAAAGGCAATGAAGCTGCTTGAAGAGATGATTGAAGCTGGACATAAGCCGG 904
Query 599 AAAATTTCACTTATTGTGCTGCCATTGATACTTTTTGCCAAGCTGGAATGGTGGATGAGG 658
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 905 AAAATTTCACTTATTGTGCTGCTATTGATACTTTCTGTCAAGCTGGAATGGTGGATGAGG 964
Query 659 CAGCTGATTTGTTTGACTTTATGATAACCAAAGGCTCTGCTGTTTCTGCTCCAACAGCAA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 965 CAGCTGATTTGTTTGACTTTATGATAACCAAAGGCTCTGCTGTTTCTGCTCCAACCGCAA 1024
Query 719 AGACGTTTGCTTTAATGATTGTGGCATTGGCAAAGAATGATAAGGCAGAAGAATGCTTTG 778
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1025 AGACTTTTGCTTTAATGATTGTGGCGTTGGCAAAGAATGATAAGGCAGAAGAATGCTTTG 1084
Query 779 AGCTAATTGGGCGTATGATAAGCACGGGTTGCCTTCCTGATGTGTCAACATACAAGGACG 838
||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
Sbjct 1085 AGCTAATTGGGCGTATGATAAGCACGGGTTGCCTTCCTGATGTCTCGACATATAAGGATG 1144
Query 839 TAATTGAAGGTATGTGTATGGCTGGAAAGGTTGAGGAAGCGTACAAGTTCTTGGATGAGA 898
|||||||||||||||||||||||| |||||| || ||||||||||||||| |||||||||
Sbjct 1145 TAATTGAAGGTATGTGTATGGCTGAAAAGGTAGATGAAGCGTACAAGTTCCTGGATGAGA 1204
Query 899 TGAGCAATAAAGGTTACCCGCCTGATATAGTAACTTACAATTGCTTTCTTAGGGTATTGT 958
|||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1205 TGAGTAATAAAGGTTACCCGCCTGATATAGTCACATACAATTGCTTTCTTAGGGTATTGT 1264
Query 959 GTGAGAATAGAAAGAGCGATGAAGCGCTGAAACTTTATGGAAGAATGGTAGAGTCGCGAT 1018
||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 1265 GTGAGAATAGAAAGACCGATGAAGCACTTAAACTTTATGGAAGAATGGTAGAGTCGCGTT 1324
Query 1019 GTGCTCCTAGCGTCCAAACGTACAACATGCTGATATCTATGTTTTTCGAGATGGATGATC 1078
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1325 GTGCTCCTAGCGTCCAAACATACAACATGCTGATATCTATGTTTTTCGAAATGGATGATC 1384
Query 1079 CTGATGGAGCATTCAATACATGGAAAGAAATGGACGAAAGAGACTGTGTTCAGGACATTG 1138
|||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 1385 CTGATGGAGCATTCAATACATGGACTGAAATGGATAAAAGAGACTGTGTTCAGGACGTTG 1444
Query 1139 AAACGTACTGTGCTATGATCAATGGGCTTTTCGACTGTCACAGAGCTAAAGAGGCGTGTT 1198
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 AAACATACTGTGCTATGATCAATGGGCTTTTCGACTGTCACAGAGCTAAAGAGGCGTGTT 1504
Query 1199 TTCTACTGGAAGAGGTTGTGAACAAAGGACTCAAACTGCCATATCGAGCGTTTGACTCTT 1258
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1505 TTCTACTGGAAGAGGTTGTGAACAAAGGACTCAAACTGCCATATCGAGTGTTTGACTCTT 1564
Query 1259 TCTTGATGCGTTTGTCT-ACTGTTGGTAACCTCAAGGCAATCCATAAGCTTTCTGAACAT 1317
||||||||||| | || | |||||||||||||||||||| |||||| |||||||||||
Sbjct 1565 TCTTGATGCGTCTATCGGAA-GTTGGTAACCTCAAGGCAATTCATAAGGTTTCTGAACAT 1623
Query 1318 ATGAAAAAGTTTTACAACCATAGTATGGCTAGGCGTTTTGCACTCAGTGAGAAGAGAAAA 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 ATGAAAAAGTTTTACAACCATAGTATGGCTAGGCGTTTTGCACTCAGTGAGAAGAGAAAG 1683
Query 1378 AGTACAAAACTCAGAGGGAAGT 1399
||||||||||||||||||||||
Sbjct 1684 AGTACAAAACTCAGAGGGAAGT 1705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72640188615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5