BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339589
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73890.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 845 0.0
> AT1G73890.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr1:27787903-27788658
REVERSE LENGTH=582
Length=582
Score = 845 bits (457), Expect = 0.0
Identities = 549/592 (93%), Gaps = 11/592 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCTACTC-TCTTTATTATTCTCTTAATCTCATTGTCACCATTCTTTCTCCC 59
|||||||||||||||| || | || | ||| |||||||| || ||| ||||||||||||
Sbjct 1 ATGGCTTCTTCTACTCTTC-TCATCACTCTTTTAATCTCCTTATCAGCATTCTTTCTCCG 59
Query 60 ACTAGTTCTCGCTCAAGTACCAGCTACATGTGCCTCCAGACTGCTTTCCCTGGCTCCATG 119
| | ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 60 AATGGTTCTCGCTCAAGTACCAGCTACATGTGCCTCCAGACTGCTTTCCTTAGCTCCATG 119
Query 120 TGGTCCATTCGTTCAAGGCTTTGCCCAGCTTCCGGCTCAGCCATGCTGTGACAGCTTAAA 179
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 120 TGGTCCATTCGTTCAAGGCTTTGCCCAACTTCCGGCTCAGCCATGTTGTGACAGCTTAAA 179
Query 180 CCAGATCTATAGCCAAGAAGCAACTTGTCTCTGTCTCTTCCTCAACAACACTTCTACTTT 239
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 180 CCAGATCTATAGCCAAGAAGCAACCTGTCTCTGTCTCTTCCTCAACAACACCTCTACTTT 239
Query 240 GTCCCCTGCTTTTCCAATTAATCAAACTCTTGCTCTACAATTGCCTCCGCTTTGCAACAT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTCCCCTGCTTTTCCAATTAATCAAACTCTTGCTCTACAATTGCCTCCGCTTTGCAACAT 299
Query 300 TCCAGCTAATTCATCCTCTTGCTCCTCCGCTTCCTCCGCCCCAGGAGGAGAGGCGCCTAG 359
|||||| ||||||||| ||||||||||| | ||| | || |||| || | |||||||
Sbjct 300 TCCAGCCAATTCATCCACTTGCTCCTCC--T-CCTTC-CCT--GGAG-AG-G-CGCCTAG 350
Query 360 TGATTCCTCCTCTGTTGCTCCACCACCTTCTAGCTCAACTAGTCCTCAAATCTCTCTAGG 419
|||||||||||||||||||||||||||||| ||||||||| || |||||||||||| |||
Sbjct 351 TGATTCCTCCTCTGTTGCTCCACCACCTTCAAGCTCAACTGGTTCTCAAATCTCTCAAGG 410
Query 420 TGCAAAGAACAACTCTCGTGTCGCGGCTACTCCGGTGGCTCAAATGGCACCAAGACCCAC 479
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 411 TGCAAAGAACAACTCTCGTGTCGCTGCTACTCCAGTGGCTCAAATGGCACCAAGACCCAC 470
Query 480 CAGTTTTATGGGATTAGGTTATGGTGTGAGATCCTCTGGCTCCAAGTCTGAGATTAAGCT 539
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||
Sbjct 471 CAGTTTTATGGGATTAGGTTATGGTTTGAAATCCTCTGGCTCCAAGTCTGAGATTCAGCT 530
Query 540 AACCATCCTTGCACTCGCAGCGATCCTACCCGCCACTCTCCTCCTCATCTGA 591
||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 531 AACCATCTTTGCACTCGCAGCGATCTTACCCGCCGCTCTCCTCCTCATCTGA 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28432527202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5