BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339621
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74240.1 | Symbols: | Mitochondrial substrate carrier famil... 1807 0.0
> AT1G74240.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr1:27917396-27920139 FORWARD LENGTH=1288
Length=1288
Score = 1807 bits (978), Expect = 0.0
Identities = 1057/1096 (96%), Gaps = 2/1096 (0%)
Strand=Plus/Plus
Query 1 ATGGCGACGAAGAGCCCGGATTCGAGCCATGAGCAACCTCCTCTGAGTTACCGTAAGAGA 60
||||||||||||||| |||||||||||||| ||||| |||||| ||||| ||||||||
Sbjct 42 ATGGCGACGAAGAGCTCGGATTCGAGCCATAAGCAATCTCCTCCGAGTTTTCGTAAGAGC 101
Query 61 GTCGAAATCAAAGCCACGCATGATCAATTTTTCGTGTGGAGAGAGTTCTTATGGGGAGGT 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 102 GTCGAAATCAAAGCCACGCATGATCAATTTTTCGTTTGGAGAGAGTTCTTATGGGGAGGT 161
Query 121 ATAGCTGGAGCTTTTGGAGAAGGAATGATGCATCCCGTGGATACTCTCAAAACCAGACTT 180
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 162 ATTGCTGGAGCTTTTGGAGAAGGAATGATGCATCCCGTTGATACTCTCAAAACTAGACTT 221
Query 181 CAGAGTCAAATTATCATGAATGCAACTCAGAGACAAAAGAGTATTCCACAAATGCTCCGA 240
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 222 CAAAGTCAAATTATCATGAATGCAACTCAGAGACAAAAGAGTATTCTACAAATGCTCCGA 281
Query 241 ACGGTCTGGGTTGGTGATGGATTAAAAGGCTTTTATAGGGGCATTGCTCCTGGAGTCACT 300
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 282 ACTGTCTGGGTTGGTGATGGCTTAAAAGGCTTTTATAGGGGCATTGCTCCTGGAGTCACT 341
Query 301 GGATCTCTTGCCACTGGAGCAACCTACTTTGGTTTTATTGAGTCCACAAAGAAATGGATT 360
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 342 GGATCTCTTGCCACTGGAGCAACTTACTTTGGTTTTATTGAGTCAACAAAGAAATGGATT 401
Query 361 GAAGAGTCTCATCCCAGCCTAG-GGGGCCACTGGGCGCATTTTATAGCTGGAGCAGTTGG 419
|||||||||||||||||| ||| ||| |||||||||||||||||||| |||||||||||
Sbjct 402 GAAGAGTCTCATCCCAGCTTAGCAGGG-CACTGGGCGCATTTTATAGCAGGAGCAGTTGG 460
Query 420 CGATACACTTGGTTCTTTCGTATATGTTCCTTGTGAAGTCATAAAGCAGCGAATGCAAAT 479
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 461 CGATACACTTGGTTCTTTCATATATGTTCCTTGTGAAGTCATAAAGCAGCGAATGCAAAT 520
Query 480 TCAAGGCACTAGTAGCTCCTGGAGCTCTTTTATTTCGAGGAACAGCGTTCCGGTGAAACC 539
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 521 TCAAGGCACTAGTAGCTCCTGGAGCTCTTATATTTCGAGGAACAGCGTTCCGGTGCAACC 580
Query 540 AAGAGGTGACATGTATGGTTATTACACTGGAATGTTCCAGGCTGGATGCTCAATATGGAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 AAGAGGTGACATGTATGGTTATTACACTGGAATGTTCCAGGCTGGATGCTCAATATGGAA 640
Query 600 AGAGCAAGGGCCAAAAGGACTGTATGCTGGATATTGGTCTACACTAGCGAGGGACGTGCC 659
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 641 AGAGCAAGGGCCAAAAGGACTATATGCTGGATATTGGTCTACACTAGCGAGGGATGTGCC 700
Query 660 TTTTGCTGGTCTTATGGTAGTGTTTTACGAAGCATTAAAGGATCTAACAGATCAGGGAAA 719
||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||
Sbjct 701 TTTTGCTGGTCTTATGGTAGTGTTTTATGAAGGATTAAAGGATCTAACAGATCAAGGAAA 760
Query 720 GAAAAAGTTTCCACAATATGGAGTCAACAGTTCGATAGAGGGTCTCGTATTGGGAGGATT 779
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 GAAAAAGTTTCCACAGTATGGAGTCAACAGTTCGATAGAGGGTCTCGTATTGGGAGGATT 820
Query 780 AGCTGGTGGACTAAGCGCTTATCTCACAACTCCTCTGGATGTTGTAAAAACAAGACTGCA 839
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 821 AGCTGGTGGACTAAGTGCTTATCTCACAACTCCACTGGATGTTGTAAAAACAAGACTGCA 880
Query 840 AGTGCAAGGATCAACGATCAAGTACAAGGGATGGTTGGATGCAGTTGGGCAGATATGGAG 899
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 881 AGTGCAAGGATCAACGATCAAGTACAAGGGATGGTTGGATGCAGTTGGACAGATATGGAG 940
Query 900 GAAGGAAGGTCCAGAAGGGTTTTTCCGGGGAAGCGTCCCAAGGGTCATGTGGTATCTTCC 959
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 941 GAAGGAAGGTCCACAAGGGTTTTTCCGAGGAAGCGTCCCAAGGGTCATGTGGTATCTTCC 1000
Query 960 GGCCTCGGCACTCACCTTCATGGCCGTTGAATTCCTTAGAGATAATTTCAGAGAGAAAGG 1019
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
Sbjct 1001 GGCCTCGGCACTCACCTTCATGGCCGTTGAGTTCCTTAGAGATAACTTCAGAGAGAAAAG 1060
Query 1020 TAATAATAATAACAATGTCGTCTCAAATTTGAGCATAGAGAGGAAAACATCTTCTACTTC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 TAATAATAATAACAATGTCGTCTCAAATTTGAGCATAGAGAGGAAAACATCTTCTACTTC 1120
Query 1080 AGTGCATGAAGGTTAG 1095
||||||||||||||||
Sbjct 1121 AGTGCATGAAGGTTAG 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53664382605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5