BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339622
Length=1899
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74250.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 2843 0.0
> AT1G74250.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr1:27920328-27922414 FORWARD LENGTH=1893
Length=1893
Score = 2843 bits (1539), Expect = 0.0
Identities = 1792/1911 (94%), Gaps = 30/1911 (2%)
Strand=Plus/Plus
Query 1 ATGGCGTCTTCATCTCGCTCGGAGAAACGATGCCACTACGAGGTTCTCGGTATCAGCAAG 60
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCTTCGTCTCGTTCGGAGAAACGATGTCACTACGAGGTTCTCGGTATCAGCAAG 60
Query 61 GAATCCTCGCCGGACGAGATTCGATCCTCTTACCGGCGTTTAGCTTTGCAGCGTCATCCC 120
||||| |||||||||||||||||||||||||| |||||||||||| |||||||||| |||
Sbjct 61 GAATCTTCGCCGGACGAGATTCGATCCTCTTATCGGCGTTTAGCTCTGCAGCGTCACCCC 120
Query 121 GACAAGCTTATGAAAGCCGGTGGATTATCTGAGGCTGAAGCCACCGCCCAGTTCCAAGAG 180
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GACAAGCTAATGAAAGCCGCTGGATTATCGGAGGCTGAAGCCACCGCCCAGTTCCAAGAG 180
Query 181 CTCGTTCACGCTTACGAGGTTTTATCAGATCCCAAGGAGCGAGCCTGGTATGATTCCCAT 240
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct 181 CTCGTTCACGCTTACGAGGTTCTATCCGATCCCAAGGAGCGAGCCTGGTATGATTCTCAT 240
Query 241 CGATCTCAGATTCTATTCGCTGACCATAGCTCAGCCGGTGGCTCGAAATCTGGTGGTATG 300
|||||||||||| |||| ||||||||||| ||||||||||||||| || | |
Sbjct 241 CGATCTCAGATTTTATTTGCTGACCATAGTTCAGCCGGTGGCTCG-AA-------G--T- 289
Query 301 CCTGGTGGCTCTGTTCCGGATCTATTCGCTTTCTTCACTCCCACTGTATATTCTGGATAC 360
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 290 -CTGGTGGCTCTGTTCCGGATCTATTCGCTTTCTTCTCTCCCACTGTATATTCTGGATAC 348
Query 361 TCAGATACCGGAAAAGGATTCTACAAGGTGTATTACGATGTGTTTAATAGTGTTTACCTC 420
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 349 TCAGATACCGGGAAAGGATTTTACAAGGTGTATTACGATGTGTTTAATAGTGTTTACCTC 408
Query 421 AACGAGATTAAGTTCGCGAGAACTTTAGGTTTGAGGTTGGATTCTGTGAGGGAAGCTCCG 480
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 409 AACGAGATTAAGTTCGCGAGAACGTTAGGTTTGAGGATGGATTCTGTGAGGGAAGCTCCG 468
Query 481 ATTATGGGGAATCTAGAGAGTCCTTACGCTCAGGTGACGGCGTTTTATAATTACTGGTTA 540
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 469 ATTATGGGGAATCTAGAGTCTCCTTATGCTCAGGTGACGGCGTTTTATAATTACTGGTTA 528
Query 541 GGTTTTTGCACTGTTATGGATTTCTGCTGGGTGGATGAGTACGATGTGATGGCTGGACCG 600
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 529 GGTTTTTGCACTGTTATGGATTTCTGCTGGGTGGATGAGTATGATGTGATGGGTGGACCG 588
Query 601 AATCGAAAGTCGAGAAGGTTGATGGAGGATGAGAATAAGAAGGT-GAGGAAGAAGGCGAA 659
|||||||||||||||||| |||||||||| |||||||| || || ||| |||||||||||
Sbjct 589 AATCGAAAGTCGAGAAGGATGATGGAGGAGGAGAATAA-AAAGTCGAGAAAGAAGGCGAA 647
Query 660 GAGAGAGTATAATGAGACTGTGAGGGGTTTGGCTGAGTTTGTAAAGAAGAGGGATaagag 719
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 648 GAGAGAGTATAATGATACTGTGAGGGGTTTGGCAGAGTTTGTGAAGAAGAGGGATAAGAG 707
Query 720 agtgattgacatgatggtgaagaagaatgcagagatggagaagaagaaagaggaggagag 779
||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 708 AGTGATTGACATGTTGGTGAAGAAGAATGCAGAGATGGAGAAGAAGAAGGAAGAGGAGAG 767
Query 780 ggagaggaagaagaagatggagaaggagagattggatagagCTATGAACTATGAGGAGCC 839
||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 768 GGAAAGGAAGAAGAAGATGGAGAAGGAGAGATTGGAGAGAGCTATGAATTACGAGGAGCC 827
Query 840 TGAATGGGCAAAGGCTCAGGAGGGAGAGGAGGAAGGGGCAGGGTTCAATGTATTGGAAGA 899
|||||||||||||||||| |||||||| || ||||||||||| ||| || |||||||||
Sbjct 828 TGAATGGGCAAAGGCTCATGAGGGAGAAGATGAAGGGGCAGGACTCAGTGAATTGGAAGA 887
Query 900 GGAGGATGATGATGCGAAGAGGAAGAATGAGCAGCTCTATTGTATTGTTTGTAGCAAGAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 GGAGGATGATGATGCGAAGAGGAAGAATGAGCAGCTCTATTGTATTGTTTGTAGCAAGAA 947
Query 960 GTTCAAAAGTGAGAAGCAGTGGAAAAACCACGAACAGTCGAAGAAGCATAAAGAGAAAGT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 GTTCAAAAGTGAGAAGCAGTGGAAAAACCACGAACAGTCGAAGAAGCATAAAGAGAAAGT 1007
Query 1020 GGCGGAGTTGAGAGAGTCATTCACTGATTATGAAGAGGAAA-TAGAGGAGGAAGAGACTG 1078
||||||| ||||||||||||||||||||||||||||||||| | || |||||||||| ||
Sbjct 1008 GGCGGAGCTGAGAGAGTCATTCACTGATTATGAAGAGGAAAAT-GAAGAGGAAGAGATTG 1066
Query 1079 ATGGGCCATTGGACCCACCTGAAAGTGTAGAGGAGCTGCATGAGAAGCTTCAGGAGGAGT 1138
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 ATGGGCCCTTGGACTCACCTGAAAGTGTAGAGGAGCTGCATGAGAAGCTTCAGGAGGAGT 1126
Query 1139 TAAATATCGACGATGAAGAAA-ATGATGTTGAGGAGGAAGTTGTAGGTGAAGCTGATGAA 1197
||||||||||| ||||||||| | |||||| || ||||||||||||||||||||||||||
Sbjct 1127 TAAATATCGACAATGAAGAAAGA-GATGTTAAGAAGGAAGTTGTAGGTGAAGCTGATGAA 1185
Query 1198 GCTGATGAGGAGTATTTTGTGGCAGAGGAGGTTATGAAAGGATCTAGTGAAAGTGAGGAT 1257
||||||| |||||||||||||||||||| | |||| |||||||||||||||||||||||
Sbjct 1186 ACTGATGATGAGTATTTTGTGGCAGAGGAAGATATGCAAGGATCTAGTGAAAGTGAGGAT 1245
Query 1258 GAGGATGACGAGATGACTCTACTCAAGAAAATGGTATCTGGACAGaaaaaaaaacgaaaa 1317
||||||||||||||||||||||||||||||||||||||||||||||| || || | ||||
Sbjct 1246 GAGGATGACGAGATGACTCTACTCAAGAAAATGGTATCTGGACAGAAGAATAAGC-AAAA 1304
Query 1318 -aaTGTCGTATCAAAGGAAGAAGATGAAG-T----C-GAAGTCGAGATCGAGAG-TGACA 1369
|||||||||||||||||||||||||||| | | |||||||||||||| || |||||
Sbjct 1305 GAATGTCGTATCAAAGGAAGAAGATGAAGATGAAACTGAAGTCGAGATCGA-AGGTGACA 1363
Query 1370 CAGCAGAGTTTAGCGAATTTGATTACCAGAAAAACACAGGTAGGAATAAAGAAGCTAACG 1429
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 1364 CAGCAGAGTTTAGCGAATTTGATAACCAGAAAAGCACAGGTAGGAATAAAGAAGCTAAGG 1423
Query 1430 AGGAGAGATTTAAACAGAATGCTGGAAAAGACATGGCAGATGACACCAGCAAAGTAAAGG 1489
| |||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1424 AAGAGAGAAATAAACAGAATGCTGGAAATGACATGGCAGATGACACCAGCAAAGTACAGA 1483
Query 1490 TACCTGGAGACGACGGTAATCCAGATGAAAACGTGAATGCAACGGACTCAGCTTCCGGAG 1549
|||||||||| | ||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1484 TACCTGGAGAGGGCGGTAATCCAGATGAAAACATGAATGCAACGGAGTCAGCTTCCGGAG 1543
Query 1550 CATTTGAGGATTCTCAGAAGGATGAGGCAAATTCAATGGAGTATGATAACAGGAAGAGCA 1609
|| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1544 CACTTGCGGATTCTCAGAAGGATGAGGCAAATTCAATGGAGTATGATAATAGGAAGAGCA 1603
Query 1610 CAGGCAGGAGGCGCAGAAGCAAAAAGGGGAAGGATAAGAATAACCAGGGAGAATTAA-TG 1668
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1604 CAGGCAGGAGGCGCAGAAGCAAAAAGGGCAAGGATAAGAATAACCAGGGAGAATTAAATG 1663
Query 1669 GAAAAGAGCAGTGAAGCGGATGATACTCCATATGTAAATCGAGACATGGAGGCGCAGGAT 1728
||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct 1664 -AAAAGAGCAGTGAAGCGGATGATACTCAATATGTAAATCGAGACATGGAGTCCCAGGAT 1722
Query 1729 TACAAGAAGGCTCCCAGATCAAAGAAATCCACCAGAGGAATGAAAACCAAGGGCACAACG 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 TACAAGAAGGCTCCCAGATCAAAGAAATCCACCAGAGGAATGAAAACCAAGGGCACAACG 1782
Query 1789 AAGAAAAACAGTGGTAATGAATGCAATAGATGTGGAGAGGAGTTTGAGTCGAGAACAAAA 1848
|||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1783 AAGAAAAACAGTAGCAATGAATGTGATAGATGTGGAGAGGAGTTTGAGTCGAGAACAAAA 1842
Query 1849 CTACACAAGCATTTGGCTGATAGCGGTCATGCGACAGTGAAATCCCGATGA 1899
||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1843 CTACACAAGCACTTGGCTGATAGTGGTCATGCGACAGTGAAATCCCGATGA 1893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94025620785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5